Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Reverse (-)

22356754 .. 22360276

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCATAACGCGAAGGGATTGTTGGGACGAATCGTTCGAGATAAGCTATGGAGATTTGGTTATCGGAGGAGCTTGTGCTCGCTTAAATTGACTTCCGAGGATCTTGATTACCAGGTTCTCGTTGAAGGAAGTGGTTGTTCCCGTACTGCGATTCTCAATAGACCACCTGCTCTCAATGCACTCACCACTCACATGGGATATAGGTTGCAGAAACTTTATAAGAATTGGGAAGAAGATCCAAATATTGGGTTTGTGATGATGAAGGGGAGTGGAAGGGCATTTTGTGCTGGTGGTGATATTGTGTCTCTCTACCATTTAAGAACGAGAGGTAGCCCGGATGCTATTAGGGAGTTTTTCTCGAGTTTGTATAGTTTTATATACTTGCTAGGCACATATCTAAAGCCACATGTGGCAATTCTTAACGGTGTTACTATGGGAGGCGGAACTGGAGTTTCGATACCTGGGACATTTCGTGTAGCTACTGATAGAACTATTTTTGCTACCCCTGAAACAATCATCGGTTTTCATCCTGATGCTGGTGCTTCTTTTAACCTCTCCCACTTACCTGGTCGCTTAGGGGAGTATCTGGGTCTGACTGGGTTAAAGCTCAGTGGGGCAGAAATGTTGGCATGTGGCCTTGCTACACATTATATTAGAAGTGAGGAGGTTCCTGTAATGGAAGAACAGCTCAAGAAGCTGCTCACTGATGATCCTTCTGTTGTTGAGTCATGCTTAGAAAAATGTGCAGAAGTTGCCCATCCGGAAAAGACTGGTGTTATTCGTAGGATCGATTTACTTGAAAAATGCTTTAGCCATGACACAGTAGAAGAAATTATTGATTCTTTGGAAATCGAGGCTAGTAGAAGAAAAGATACATGGTGCATTACGACTCTACGTAGACTTAAAGAAAGCTCACCGTTATCTTTGAAGGTGGCATTGAGATCTATCCGGGAAGGAAGATTACAAACACTTGACCAATGCTTAATCCGAGAGTACAGAATGTCGCTACAAGGATTAATCGGGCCAATGTCCGGCAATTTTTGTGAGGGAGTACGAGCTCGATTGATAGACAAGGATGAAGCACCAAAGTGGGATCCACCGAGCTTGGAGAAAGTATCAGAGGACATGGTTGATGATTACTTCTGTGCCTTGACTCCCACGGAACCTGATCTTGACCTTCCTGTCAAACTCAGAGAAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

401

Amino Acids

44.76

Weight (kDa)

6.34

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	48 - 316	2.5e-95	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	52 - 279	3.5e-24	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AarI	CACCTGC	1 cut(s)	175
AasI	GACNNNNNNGTC	1 cut(s)	1181
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	898
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	6 cut(s)	108, 230, 704, 794, 1088, 1101
AfaI	GTAC	3 cut(s)	145, 995, 1053
AfiI	CCNNNNNNNGG	3 cut(s)	245, 536, 1031
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	125, 800, 928
AjnI	CCWGG	3 cut(s)	111, 460, 565
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AleI	CACNNNNGTG	1 cut(s)	1087
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	9 cut(s)	46, 72, 479, 607, 688, 697, 912, 1058, 1104
AluI	AGCT	9 cut(s)	46, 72, 479, 607, 688, 697, 912, 1058, 1104
Alw21I	GWGCWC	2 cut(s)	80, 1060
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	6 cut(s)	108, 230, 704, 794, 1088, 1101
Ama87I	CYCGRG	1 cut(s)	358
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	2 cut(s)	634, 1022
ApeKI	GCWGC	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AseI	ATTAAT	1 cut(s)	1016
AspS9I	GGNCC	1 cut(s)	1022
AsuC2I	CCSGG	2 cut(s)	335, 950
AsuHPI	GGTGA	3 cut(s)	175, 305, 906
AvaI	CYCGRG	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	1093
BanII	GRGCYC	1 cut(s)	1060
BarI	GAAGNNNNNNTAC	4 cut(s)	856, 888, 945, 977
Bbv12I	GWGCWC	2 cut(s)	80, 1060
BbvI	GCAGC	1 cut(s)	684
BccI	CCATC	1 cut(s)	765
BciT130I	CCWGG	3 cut(s)	113, 462, 567
BcnI	CCSGG	2 cut(s)	335, 950
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	386, 858
BfuAI	ACCTGC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	5 cut(s)	113, 335, 462, 567, 950
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	1022
BmiI	GGNNCC	3 cut(s)	669, 1095, 1164
BmrFI	CCNGG	5 cut(s)	113, 335, 462, 567, 950
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	328, 523
BmuI	ACTGGG	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	2 cut(s)	335, 950
Bsa29I	ATCGAT	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	896
BsaJI	CCNNGG	3 cut(s)	96, 461, 1158
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 536, 1031
Bse1I	ACTGG	3 cut(s)	451, 601, 775
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	3 cut(s)	113, 462, 567
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	3 cut(s)	96, 461, 1158
BseGI	GGATG	4 cut(s)	343, 526, 757, 1081
BseLI	CCNNNNNNNGG	3 cut(s)	245, 536, 1031
BseMII	CTCAG	2 cut(s)	622, 1204
BseNI	ACTGG	3 cut(s)	451, 601, 775
BseRI	GAGGAG	2 cut(s)	82, 677
BseXI	GCAGC	1 cut(s)	684
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	636, 1024
BshVI	ATCGAT	1 cut(s)	789
BsiHKAI	GWGCWC	2 cut(s)	80, 1060
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	4 cut(s)	335, 761, 949, 1032
BslFI	GGGAC	2 cut(s)	39, 478
BslI	CCNNNNNNNGG	3 cut(s)	245, 536, 1031
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	39, 478
BsnI	GGCC	2 cut(s)	636, 1024
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	80, 1060
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	636, 1024
BspCNI	CTCAG	2 cut(s)	621, 1203
BspDI	ATCGAT	1 cut(s)	789
BspEI	TCCGGA	1 cut(s)	760
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	669, 1095, 1164
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	6 cut(s)	108, 230, 704, 794, 1088, 1101
BsrI	ACTGG	3 cut(s)	451, 601, 775
BssECI	CCNNGG	3 cut(s)	96, 461, 1158
BssMI	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
Bst2UI	CCWGG	3 cut(s)	113, 462, 567
Bst4CI	ACNGT	3 cut(s)	425, 823, 918
BstAPI	GCANNNNNTGC	2 cut(s)	284, 752
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	4 cut(s)	574, 608, 733, 1190
BstDSI	CCRYGG	1 cut(s)	1158
BstF5I	GGATG	4 cut(s)	343, 526, 757, 1081
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	7 cut(s)	103, 238, 712, 789, 944, 1096, 1171
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 284, 694, 752
BstNI	CCWGG	3 cut(s)	113, 462, 567
BstNSI	RCATGY	2 cut(s)	410, 633
BstSCI	CCNGG	5 cut(s)	111, 333, 460, 565, 948
BstSNI	TACGTA	1 cut(s)	896
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	684
BstX2I	RGATCY	4 cut(s)	100, 235, 941, 1093
BstXI	CCANNNNNNTGG	2 cut(s)	193, 566
BstYI	RGATCY	4 cut(s)	100, 235, 941, 1093
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	2 cut(s)	636, 1024
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	1158
BtsCI	GGATG	4 cut(s)	343, 526, 757, 1081
BtsIMutI	CAGTG	2 cut(s)	616, 702
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	1022
ClaI	ATCGAT	1 cut(s)	789
CsiI	ACCWGGT	2 cut(s)	111, 565
Csp6I	GTAC	3 cut(s)	144, 994, 1052
CspCI	CAANNNNNGTGG	2 cut(s)	1086, 1121
CviAII	CATG	7 cut(s)	193, 407, 630, 729, 815, 876, 1126
CviQI	GTAC	3 cut(s)	144, 994, 1052
DdeI	CTNAG	4 cut(s)	574, 608, 733, 1190
DpnI	GATC	7 cut(s)	102, 237, 711, 788, 943, 1095, 1170
DpnII	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
DrdI	GACNNNNNNGTC	1 cut(s)	1181
DseDI	GACNNNNNNGTC	1 cut(s)	1181
EciI	GGCGGA	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	1058
Eco105I	TACGTA	1 cut(s)	896
Eco24I	GRGCYC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	1058
Eco88I	CYCGRG	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	1058
EcoRII	CCWGG	3 cut(s)	111, 460, 565
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1060
FaeI	CATG	7 cut(s)	196, 410, 633, 732, 818, 879, 1129
FaqI	GGGAC	2 cut(s)	39, 478
FatI	CATG	7 cut(s)	192, 406, 629, 728, 814, 875, 1125
FblI	GTMKAC	1 cut(s)	898
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	4 cut(s)	350, 513, 744, 1088
FriOI	GRGCYC	1 cut(s)	1060
Fsp4HI	GCNGC	1 cut(s)	698
FspBI	CTAG	2 cut(s)	386, 858
GluI	GCNGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	636, 1024
HapII	CCGG	4 cut(s)	335, 761, 949, 1032
Hin1II	CATG	7 cut(s)	196, 410, 633, 732, 818, 879, 1129
HinfI	GANTC	6 cut(s)	30, 151, 725, 839, 889, 1153
HpaII	CCGG	4 cut(s)	335, 761, 949, 1032
HphI	GGTGA	3 cut(s)	175, 305, 906
Hpy166II	GTNNAC	1 cut(s)	899
Hpy188I	TCNGA	6 cut(s)	66, 97, 594, 989, 1120, 1193
Hpy188III	TCNNGA	7 cut(s)	38, 104, 358, 530, 691, 761, 1172
Hpy8I	GTNNAC	1 cut(s)	899
HpyAV	CCTTC	8 cut(s)	7, 119, 256, 267, 723, 922, 947, 1187
HpyCH4III	ACNGT	3 cut(s)	425, 823, 918
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	5 cut(s)	4, 179, 208, 746, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 284, 694, 752
HpyF3I	CTNAG	4 cut(s)	574, 608, 733, 1190
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	7 cut(s)	196, 410, 633, 732, 818, 879, 1129
Kpn2I	TCCGGA	1 cut(s)	760
Kzo9I	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	684
LweI	GCATC	2 cut(s)	328, 523
MabI	ACCWGGT	2 cut(s)	111, 565
MaeI	CTAG	2 cut(s)	386, 858
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	7 cut(s)	102, 237, 711, 788, 943, 1095, 1170
MboI	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
MboII	GAAGA	6 cut(s)	242, 245, 692, 839, 876, 969
MflI	RGATCY	4 cut(s)	100, 235, 941, 1093
MhlI	GDGCHC	2 cut(s)	80, 1060
MluCI	AATT	5 cut(s)	86, 223, 414, 831, 1036
MlyI	GAGTC	3 cut(s)	734, 883, 1147
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	760
MseI	TTAA	8 cut(s)	84, 317, 420, 549, 602, 903, 983, 1016
MslI	CAYNNNNRTG	3 cut(s)	191, 531, 1087
MspI	CCGG	4 cut(s)	335, 761, 949, 1032
MspR9I	CCNGG	5 cut(s)	113, 335, 462, 567, 950
MvaI	CCWGG	3 cut(s)	113, 462, 567
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	176, 284, 694, 752
NciI	CCSGG	2 cut(s)	335, 950
NdeII	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
NlaIII	CATG	7 cut(s)	196, 410, 633, 732, 818, 879, 1129
NlaIV	GGNNCC	3 cut(s)	669, 1095, 1164
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	410, 633
OliI	CACNNNNGTG	1 cut(s)	1087
PaeR7I	CTCGAG	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	175
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	30, 151, 839
PflMI	CCANNNNNTGG	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	1 cut(s)	699
PleI	GAGTC	3 cut(s)	733, 883, 1147
PpsI	GAGTC	3 cut(s)	733, 883, 1147
Ppu21I	YACGTR	1 cut(s)	896
PscI	ACATGT	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	1016
PsiI	TTATAA	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	1060
Psp6I	CCWGG	3 cut(s)	111, 460, 565
PspGI	CCWGG	3 cut(s)	111, 460, 565
PspN4I	GGNNCC	3 cut(s)	669, 1095, 1164
PspPI	GGNCC	1 cut(s)	1022
PsuI	RGATCY	4 cut(s)	100, 235, 941, 1093
RsaI	GTAC	3 cut(s)	145, 995, 1053
RsaNI	GTAC	3 cut(s)	144, 994, 1052
RseI	CAYNNNNRTG	3 cut(s)	191, 531, 1087
SacI	GAGCTC	1 cut(s)	1060
SaqAI	TTAA	8 cut(s)	84, 317, 420, 549, 602, 903, 983, 1016
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	7 cut(s)	100, 235, 709, 786, 941, 1093, 1168
Sau96I	GGNCC	1 cut(s)	1022
SchI	GAGTC	3 cut(s)	734, 883, 1147
ScrFI	CCNGG	5 cut(s)	113, 335, 462, 567, 950
SduI	GDGCHC	2 cut(s)	80, 1060
SexAI	ACCWGGT	2 cut(s)	111, 565
SfaNI	GCATC	2 cut(s)	328, 523
Sfr274I	CTCGAG	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	191, 531, 1087
SmlI	CTYRAG	2 cut(s)	358, 689
SmoI	CTYRAG	2 cut(s)	358, 689
SnaBI	TACGTA	1 cut(s)	896
Sse9I	AATT	5 cut(s)	86, 223, 414, 831, 1036
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	386, 858
SstI	GAGCTC	1 cut(s)	1060
StyD4I	CCNGG	5 cut(s)	111, 333, 460, 565, 948
TaaI	ACNGT	3 cut(s)	425, 823, 918
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	6 cut(s)	37, 359, 455, 789, 852, 1060
TasI	AATT	5 cut(s)	86, 223, 414, 831, 1036
TatI	WGTACW	1 cut(s)	993
TfiI	GAWTC	3 cut(s)	30, 151, 839
Tru1I	TTAA	8 cut(s)	84, 317, 420, 549, 602, 903, 983, 1016
Tru9I	TTAA	8 cut(s)	84, 317, 420, 549, 602, 903, 983, 1016
TscAI	CASTG	2 cut(s)	616, 709
TseI	GCWGC	1 cut(s)	697
TspDTI	ATGAA	3 cut(s)	275, 515, 1092
TspGWI	ACGGA	1 cut(s)	1175
TspRI	CASTG	2 cut(s)	616, 709
Van91I	CCANNNNNTGG	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	1016
XceI	RCATGY	2 cut(s)	410, 633
XhoI	CTCGAG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	898
XspI	CTAG	2 cut(s)	386, 858
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.