Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Reverse (-)

43085036 .. 43090865

Gene Structure 5830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATGCAGAGGCTCAAGGCAGCTGTATTGGCCAGACACGGCGGCCTTGACAGTTGTCGTTTCCTCCGCCATTGCAGCAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCTGTGCTCAATGCTCTCACTACTGCAATGGTTTTTGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCCGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACTTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACAGTTGAAGAGATTATAGATGCCTTGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGACTTTCTAAGCAGATTACGGGTGACTTCTGTGAGGGGGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCAAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTTCCAACAGAGTCGCGAGAAGCATTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

310

Amino Acids

34.68

Weight (kDa)

5.34

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	69 - 289	1.7e-70	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	139, 260
AccII	CGCG	1 cut(s)	916
AciI	CCGC	2 cut(s)	42, 67
AclWI	GGATC	6 cut(s)	428, 590, 603, 812, 825, 864
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	4 cut(s)	139, 260, 813, 814
AgsI	TTSAA	7 cut(s)	146, 387, 449, 515, 551, 652, 833
AhlI	ACTAGT	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	4 cut(s)	225, 257, 396, 428
AloI	GAACNNNNNNTCC	2 cut(s)	580, 612
AluBI	AGCT	3 cut(s)	23, 155, 648
AluI	AGCT	3 cut(s)	23, 155, 648
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	616, 640
AlwI	GGATC	6 cut(s)	428, 590, 603, 812, 825, 864
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	30, 43, 85
ApeKI	GCWGC	2 cut(s)	20, 75
AseI	ATTAAT	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	159, 338, 709
AsuC2I	CCSGG	2 cut(s)	101, 291
AsuHPI	GGTGA	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	159, 338, 709
BaeGI	GKGCMC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	32
BamHI	GGATCC	2 cut(s)	595, 817
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	32, 87
BccI	CCATC	2 cut(s)	258, 489
BceAI	ACGGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	2 cut(s)	101, 291
BcoDI	GTCTC	2 cut(s)	616, 640
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	3 cut(s)	21, 43, 76
BlsI	GCNGC	3 cut(s)	22, 44, 77
Bme1390I	CCNGG	2 cut(s)	101, 291
Bme18I	GGWCC	3 cut(s)	159, 338, 709
BmgT120I	GGNCC	3 cut(s)	159, 338, 709
BmiI	GGNNCC	2 cut(s)	597, 819
BmrFI	CCNGG	2 cut(s)	101, 291
BmsI	GCATC	4 cut(s)	247, 275, 336, 553
BoxI	GACNNNNGTC	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	101, 291
BsaJI	CCNNGG	2 cut(s)	567, 599
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 260, 813, 814
Bse3DI	GCAATG	2 cut(s)	70, 219
BseDI	CCNNGG	2 cut(s)	567, 599
BseGI	GGATG	3 cut(s)	250, 266, 481
BseLI	CCNNNNNNNGG	4 cut(s)	139, 260, 813, 814
BseMI	GCAATG	2 cut(s)	70, 219
BseMII	CTCAG	2 cut(s)	333, 816
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	2 cut(s)	32, 87
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	3 cut(s)	32, 45, 87
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	101, 291
BslFI	GGGAC	2 cut(s)	750, 854
BslI	CCNNNNNNNGG	4 cut(s)	139, 260, 813, 814
BsmAI	GTCTC	2 cut(s)	616, 640
BsmFI	GGGAC	2 cut(s)	750, 854
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	3 cut(s)	32, 45, 87
Bsp1286I	GDGCHC	2 cut(s)	195, 784
Bsp143I	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
Bsp19I	CCATGG	1 cut(s)	599
Bsp68I	TCGCGA	1 cut(s)	916
BspACI	CCGC	2 cut(s)	42, 67
BspANI	GGCC	3 cut(s)	32, 45, 87
BspCNI	CTCAG	2 cut(s)	334, 815
BspFNI	CGCG	1 cut(s)	916
BspLI	GGNNCC	2 cut(s)	597, 819
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	6 cut(s)	428, 590, 603, 812, 825, 864
BsrDI	GCAATG	2 cut(s)	70, 219
BssECI	CCNNGG	2 cut(s)	567, 599
BssMI	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
BssT1I	CCWWGG	2 cut(s)	567, 599
Bst4CI	ACNGT	2 cut(s)	53, 547
Bst6I	CTCTTC	2 cut(s)	76, 546
BstC8I	GCNNGC	3 cut(s)	351, 363, 583
BstDEI	CTNAG	7 cut(s)	298, 342, 662, 744, 802, 875, 895
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	3 cut(s)	250, 266, 481
BstFNI	CGCG	1 cut(s)	916
BstKTI	GATC	7 cut(s)	124, 436, 598, 668, 700, 820, 859
BstMAI	GTCTC	2 cut(s)	616, 640
BstMBI	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 75, 84
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	99, 289
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	32, 87
BstX2I	RGATCY	3 cut(s)	595, 665, 817
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstYI	RGATCY	3 cut(s)	595, 665, 817
BsuRI	GGCC	3 cut(s)	32, 45, 87
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	250, 266, 481
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 426, 707
BtuMI	TCGCGA	1 cut(s)	916
Cac8I	GCNNGC	3 cut(s)	351, 363, 583
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	159, 338, 709
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	4 cut(s)	467, 539, 600, 850
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	7 cut(s)	298, 342, 662, 744, 802, 875, 895
DpnI	GATC	7 cut(s)	123, 435, 597, 667, 699, 819, 858
DpnII	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	76, 546
EarI	CTCTTC	2 cut(s)	76, 546
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	567, 599
Eco147I	AGGCCT	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	159, 338, 709
EcoT14I	CCWWGG	2 cut(s)	567, 599
ErhI	CCWWGG	2 cut(s)	567, 599
FaeI	CATG	4 cut(s)	470, 542, 603, 853
FaiI	YATR	7 cut(s)	381, 468, 540, 560, 601, 671, 851
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	2 cut(s)	750, 854
FatI	CATG	4 cut(s)	466, 538, 599, 849
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	21, 43, 76
FokI	GGATG	3 cut(s)	237, 253, 468
Fsp4HI	GCNGC	3 cut(s)	21, 43, 76
FspBI	CTAG	1 cut(s)	788
GluI	GCNGC	3 cut(s)	21, 43, 76
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	32, 45, 87
HapII	CCGG	2 cut(s)	101, 291
Hin1II	CATG	4 cut(s)	470, 542, 603, 853
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	3 cut(s)	391, 800, 911
HpaII	CCGG	2 cut(s)	101, 291
HphI	GGTGA	1 cut(s)	770
Hpy188I	TCNGA	2 cut(s)	690, 932
Hpy188III	TCNNGA	5 cut(s)	125, 162, 254, 485, 915
HpyAV	CCTTC	5 cut(s)	140, 195, 447, 646, 671
HpyCH4III	ACNGT	2 cut(s)	53, 547
HpyCH4V	TGCA	6 cut(s)	7, 75, 170, 212, 379, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 75, 84
HpyF3I	CTNAG	7 cut(s)	298, 342, 662, 744, 802, 875, 895
Hsp92II	CATG	4 cut(s)	470, 542, 603, 853
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
Lsp1109I	GCAGC	2 cut(s)	32, 87
LweI	GCATC	4 cut(s)	247, 275, 336, 553
MaeI	CTAG	1 cut(s)	788
MaeIII	GTNAC	4 cut(s)	293, 424, 758, 838
MalI	GATC	7 cut(s)	123, 435, 597, 667, 699, 819, 858
MboI	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
MboII	GAAGA	5 cut(s)	93, 416, 419, 563, 693
MflI	RGATCY	3 cut(s)	595, 665, 817
MhlI	GDGCHC	2 cut(s)	195, 784
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	3 cut(s)	240, 515, 573
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	794, 920
MmeI	TCCRAC	1 cut(s)	929
MnlI	CCTC	9 cut(s)	3, 74, 77, 98, 122, 571, 763, 831, 882
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	2 cut(s)	398, 627
MslI	CAYNNNNRTG	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	101, 291
MspR9I	CCNGG	2 cut(s)	101, 291
Mva1269I	GAATGC	1 cut(s)	923
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	3 cut(s)	29, 75, 84
NciI	CCSGG	2 cut(s)	101, 291
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
NlaIII	CATG	4 cut(s)	470, 542, 603, 853
NlaIV	GGNNCC	2 cut(s)	597, 819
NmuCI	GTSAC	3 cut(s)	293, 424, 758
NruI	TCGCGA	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	87
PctI	GAATGC	1 cut(s)	923
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	2 cut(s)	139, 260
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	22, 44, 77
PleI	GAGTC	2 cut(s)	794, 919
PpsI	GAGTC	2 cut(s)	794, 919
PshAI	GACNNNNGTC	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	597, 819
PspPI	GGNCC	3 cut(s)	159, 338, 709
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	595, 665, 817
PvuII	CAGCTG	1 cut(s)	23
RruI	TCGCGA	1 cut(s)	916
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	398, 627
SatI	GCNGC	3 cut(s)	21, 43, 76
Sau3AI	GATC	7 cut(s)	121, 433, 595, 665, 697, 817, 856
Sau96I	GGNCC	3 cut(s)	159, 338, 709
SchI	GAGTC	2 cut(s)	794, 920
ScrFI	CCNGG	2 cut(s)	101, 291
SduI	GDGCHC	2 cut(s)	195, 784
SetI	ASST	7 cut(s)	25, 157, 187, 279, 343, 650, 657
SfaNI	GCATC	4 cut(s)	247, 275, 336, 553
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	159, 338, 709
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	3 cut(s)	240, 515, 573
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	2 cut(s)	42, 67
SspI	AATATT	1 cut(s)	863
SspMI	CTAG	1 cut(s)	788
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	99, 289
StyI	CCWWGG	2 cut(s)	567, 599
TaaI	ACNGT	2 cut(s)	53, 547
TaqI	TCGA	2 cut(s)	402, 792
TasI	AATT	3 cut(s)	240, 515, 573
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	398, 627
Tru9I	TTAA	2 cut(s)	398, 627
TscAI	CASTG	3 cut(s)	112, 433, 707
TseFI	GTSAC	3 cut(s)	293, 424, 758
TseI	GCWGC	2 cut(s)	20, 75
Tsp45I	GTSAC	3 cut(s)	293, 424, 758
TspDTI	ATGAA	2 cut(s)	540, 916
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	3 cut(s)	112, 433, 707
Van91I	CCANNNNNTGG	2 cut(s)	139, 260
VpaK11BI	GGWCC	3 cut(s)	159, 338, 709
VspI	ATTAAT	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	2 cut(s)	257, 850
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.