Rroxscaffold_4G00306970

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
27999647 .. 28006260
6614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306970.1

Sequence Viewer

Length: 1161 bp
ATGATGCAGAGGCTCAAGGCAGCTGTATTGGCCAGGCGCGGCAGCCTTGACAGTTGTCGTTTCCTCAGCCATTGCAGCAGAAGAGGTCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCAGTGCTCAATGCTCTCACTACTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACCAAGGTAGAACTGTCGTGGCTATCTTGAATGGCGTTACCATGGGTGGCGGTGGTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTTTTCGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCGGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAATCTAGTTTAGACAAACATGGGGAACTTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACAGTTGAAGAGATTATAGATGCCTTGGAAATTGAGGCAGGCAGGACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCTCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGATTTTCTAAGCAGATTACCGGTGACTTCTGTGAGGGTGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCTAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTACCAACAGAGTCGCGAGAAGCATTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

42.56

Weight (kDa)

5.62

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 55 - 117 1.4e-17 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 59 - 199 5.5e-15 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 119 - 365 7.3e-86 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 488
AccII CGCG 2 cut(s) 39, 1144
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 4 cut(s) 39, 308, 393, 424
AclWI GGATC 6 cut(s) 656, 818, 831, 1040, 1053, 1092
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 239, 947
AfiI CCNNNNNNNGG 5 cut(s) 139, 266, 488, 1041, 1042
AgeI ACCGGT 1 cut(s) 983
AgsI TTSAA 9 cut(s) 146, 283, 373, 615, 677, 743, 779, 880, 1061
AhlI ACTAGT 1 cut(s) 1015
AjnI CCWGG 2 cut(s) 32, 412
AjuI GAANNNNNNNTTGG 4 cut(s) 453, 485, 624, 656
AluBI AGCT 3 cut(s) 23, 155, 876
AluI AGCT 3 cut(s) 23, 155, 876
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 5 cut(s) 92, 330, 409, 844, 868
AlwI GGATC 6 cut(s) 656, 818, 831, 1040, 1053, 1092
AlwNI CAGNNNCTG 2 cut(s) 235, 488
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 20, 42, 75
AseI ATTAAT 1 cut(s) 626
AsiGI ACCGGT 1 cut(s) 983
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 159, 566, 937
AsuC2I CCSGG 2 cut(s) 101, 519
AsuHPI GGTGA 1 cut(s) 998
AvaII GGWCC 3 cut(s) 159, 566, 937
BaeGI GKGCMC 1 cut(s) 1012
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 2 cut(s) 823, 1045
Bbv12I GWGCWC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 32, 54, 87
BccI CCATC 2 cut(s) 486, 717
BciT130I CCWGG 2 cut(s) 34, 414
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 2 cut(s) 101, 519
BcoDI GTCTC 5 cut(s) 92, 330, 409, 844, 868
BcuI ACTAGT 1 cut(s) 1015
BfaI CTAG 3 cut(s) 681, 1016, 1053
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 893
BisI GCNGC 4 cut(s) 21, 40, 43, 76
BlsI GCNGC 4 cut(s) 22, 41, 44, 77
Bme1390I CCNGG 4 cut(s) 34, 101, 414, 519
Bme18I GGWCC 3 cut(s) 159, 566, 937
BmgT120I GGNCC 3 cut(s) 159, 566, 937
BmiI GGNNCC 2 cut(s) 825, 1047
BmrFI CCNGG 4 cut(s) 34, 101, 414, 519
BmsI GCATC 4 cut(s) 475, 503, 564, 781
BoxI GACNNNNGTC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 101, 519
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 5 cut(s) 346, 384, 412, 795, 827
BsaWI WCCGGW 2 cut(s) 259, 983
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 266, 488, 1041, 1042
Bse118I RCCGGY 1 cut(s) 983
Bse3DI GCAATG 3 cut(s) 70, 219, 426
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 2 cut(s) 34, 414
BseDI CCNNGG 5 cut(s) 346, 384, 412, 795, 827
BseGI GGATG 4 cut(s) 268, 478, 494, 709
BseLI CCNNNNNNNGG 5 cut(s) 139, 266, 488, 1041, 1042
BseMI GCAATG 3 cut(s) 70, 219, 426
BseMII CTCAG 3 cut(s) 79, 561, 1044
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 3 cut(s) 32, 54, 87
BseYI CCCAGC 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 39, 1144
BshFI GGCC 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 4 cut(s) 101, 260, 518, 984
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 5 cut(s) 139, 266, 488, 1041, 1042
BsmAI GTCTC 5 cut(s) 92, 330, 409, 844, 868
BsmFI GGGAC 1 cut(s) 1082
BsmI GAATGC 1 cut(s) 1151
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 195, 1012
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
Bsp19I CCATGG 2 cut(s) 384, 827
Bsp68I TCGCGA 1 cut(s) 1144
BspACI CCGC 4 cut(s) 39, 308, 393, 424
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 78, 562, 1043
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 39, 1144
BspLI GGNNCC 2 cut(s) 825, 1047
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 6 cut(s) 656, 818, 831, 1040, 1053, 1092
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 3 cut(s) 70, 219, 426
BsrFI RCCGGY 1 cut(s) 983
BsrGI TGTACA 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 5 cut(s) 346, 384, 412, 795, 827
BssMI GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
BssT1I CCWWGG 4 cut(s) 346, 384, 795, 827
Bst2UI CCWGG 2 cut(s) 34, 414
Bst4CI ACNGT 5 cut(s) 53, 237, 358, 445, 775
Bst6I CTCTTC 2 cut(s) 76, 774
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 579, 591, 811
BstDEI CTNAG 9 cut(s) 65, 221, 526, 570, 890, 972, 1030, 1103, 1123
BstDSI CCRYGG 2 cut(s) 384, 827
BstF5I GGATG 4 cut(s) 268, 478, 494, 709
BstFNI CGCG 2 cut(s) 39, 1144
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 7 cut(s) 124, 664, 826, 896, 928, 1048, 1087
BstMAI GTCTC 5 cut(s) 92, 330, 409, 844, 868
BstMBI GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 29, 75, 226, 305
BstNI CCWGG 2 cut(s) 34, 414
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 4 cut(s) 32, 99, 412, 517
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 2 cut(s) 39, 1144
BstV1I GCAGC 3 cut(s) 32, 54, 87
BstX2I RGATCY 3 cut(s) 823, 893, 1045
BstXI CCANNNNNNTGG 1 cut(s) 1078
BstYI RGATCY 3 cut(s) 823, 893, 1045
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 384, 827
BtsCI GGATG 4 cut(s) 268, 478, 494, 709
BtsI GCAGTG 2 cut(s) 105, 295
BtsIMutI CAGTG 5 cut(s) 105, 195, 295, 654, 935
BtuMI TCGCGA 1 cut(s) 1144
Cac8I GCNNGC 3 cut(s) 579, 591, 811
CaiI CAGNNNCTG 2 cut(s) 235, 488
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 3 cut(s) 159, 566, 937
Csp6I GTAC 2 cut(s) 238, 946
CspAI ACCGGT 1 cut(s) 983
CviAII CATG 5 cut(s) 385, 695, 767, 828, 1078
CviQI GTAC 2 cut(s) 238, 946
DdeI CTNAG 9 cut(s) 65, 221, 526, 570, 890, 972, 1030, 1103, 1123
DpnI GATC 7 cut(s) 123, 663, 825, 895, 927, 1047, 1086
DpnII GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 76, 774
EarI CTCTTC 2 cut(s) 76, 774
Eco130I CCWWGG 4 cut(s) 346, 384, 795, 827
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 3 cut(s) 159, 566, 937
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 32, 412
EcoT14I CCWWGG 4 cut(s) 346, 384, 795, 827
ErhI CCWWGG 4 cut(s) 346, 384, 795, 827
FaeI CATG 5 cut(s) 388, 698, 770, 831, 1081
FaiI YATR 8 cut(s) 386, 609, 696, 768, 788, 829, 899, 1079
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 1082
FatI CATG 5 cut(s) 384, 694, 766, 827, 1077
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 925
Fnu4HI GCNGC 4 cut(s) 21, 40, 43, 76
FokI GGATG 4 cut(s) 275, 465, 481, 696
Fsp4HI GCNGC 4 cut(s) 21, 40, 43, 76
FspBI CTAG 3 cut(s) 681, 1016, 1053
GlaI GCGC 1 cut(s) 38
GluI GCNGC 4 cut(s) 21, 40, 43, 76
GsaI CCCAGC 1 cut(s) 492
HaeIII GGCC 1 cut(s) 32
HapII CCGG 4 cut(s) 101, 260, 518, 984
HhaI GCGC 1 cut(s) 39
Hin1II CATG 5 cut(s) 388, 698, 770, 831, 1081
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 4 cut(s) 619, 677, 1028, 1139
HpaII CCGG 4 cut(s) 101, 260, 518, 984
HphI GGTGA 1 cut(s) 998
Hpy188I TCNGA 2 cut(s) 918, 1160
Hpy188III TCNNGA 7 cut(s) 125, 162, 260, 370, 482, 713, 1143
HpyAV CCTTC 6 cut(s) 140, 195, 277, 675, 874, 899
HpyCH4III ACNGT 5 cut(s) 53, 237, 358, 445, 775
HpyCH4V TGCA 9 cut(s) 7, 75, 170, 212, 229, 278, 431, 607, 834
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 75, 226, 305
HpyF3I CTNAG 9 cut(s) 65, 221, 526, 570, 890, 972, 1030, 1103, 1123
Hsp92II CATG 5 cut(s) 388, 698, 770, 831, 1081
HspAI GCGC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
Lsp1109I GCAGC 3 cut(s) 32, 54, 87
LweI GCATC 4 cut(s) 475, 503, 564, 781
MaeI CTAG 3 cut(s) 681, 1016, 1053
MaeIII GTNAC 5 cut(s) 379, 521, 652, 986, 1066
MalI GATC 7 cut(s) 123, 663, 825, 895, 927, 1047, 1086
MboI GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
MboII GAAGA 6 cut(s) 93, 263, 644, 647, 791, 921
MflI RGATCY 3 cut(s) 823, 893, 1045
MhlI GDGCHC 2 cut(s) 195, 1012
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 3 cut(s) 468, 743, 801
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 2 cut(s) 1022, 1148
MnlI CCTC 8 cut(s) 3, 74, 77, 122, 799, 991, 1059, 1110
Mox20I TGGCCA 1 cut(s) 32
MroI TCCGGA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 626, 855
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 4 cut(s) 101, 260, 518, 984
MspR9I CCNGG 4 cut(s) 34, 101, 414, 519
Mva1269I GAATGC 1 cut(s) 1151
MvaI CCWGG 2 cut(s) 34, 414
MvnI CGCG 2 cut(s) 39, 1144
MwoI GCNNNNNNNGC 4 cut(s) 29, 75, 226, 305
NciI CCSGG 2 cut(s) 101, 519
NcoI CCATGG 2 cut(s) 384, 827
NdeII GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
NlaIII CATG 5 cut(s) 388, 698, 770, 831, 1081
NlaIV GGNNCC 2 cut(s) 825, 1047
NmuCI GTSAC 3 cut(s) 521, 652, 986
NruI TCGCGA 1 cut(s) 1144
PctI GAATGC 1 cut(s) 1151
PfeI GAWTC 2 cut(s) 619, 677
PflMI CCANNNNNTGG 2 cut(s) 139, 488
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 983
PkrI GCNGC 4 cut(s) 22, 41, 44, 77
PleI GAGTC 2 cut(s) 1022, 1147
PpsI GAGTC 2 cut(s) 1022, 1147
PshAI GACNNNNGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 32, 412
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 2 cut(s) 32, 412
PspN4I GGNNCC 2 cut(s) 825, 1047
PspPI GGNCC 3 cut(s) 159, 566, 937
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 2 cut(s) 235, 488
PsuI RGATCY 3 cut(s) 823, 893, 1045
PvuII CAGCTG 1 cut(s) 23
RruI TCGCGA 1 cut(s) 1144
RsaI GTAC 2 cut(s) 239, 947
RsaNI GTAC 2 cut(s) 238, 946
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 2 cut(s) 626, 855
SatI GCNGC 4 cut(s) 21, 40, 43, 76
Sau3AI GATC 7 cut(s) 121, 661, 823, 893, 925, 1045, 1084
Sau96I GGNCC 3 cut(s) 159, 566, 937
SchI GAGTC 2 cut(s) 1022, 1148
ScrFI CCNGG 4 cut(s) 34, 101, 414, 519
SduI GDGCHC 2 cut(s) 195, 1012
SetI ASST 9 cut(s) 25, 88, 157, 187, 352, 507, 571, 878, 885
SfaNI GCATC 4 cut(s) 475, 503, 564, 781
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 3 cut(s) 159, 566, 937
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 1015
Sse9I AATT 3 cut(s) 468, 743, 801
SsiI CCGC 4 cut(s) 39, 308, 393, 424
SspI AATATT 1 cut(s) 1091
SspMI CTAG 3 cut(s) 681, 1016, 1053
StyD4I CCNGG 4 cut(s) 32, 99, 412, 517
StyI CCWWGG 4 cut(s) 346, 384, 795, 827
TaaI ACNGT 5 cut(s) 53, 237, 358, 445, 775
TaqI TCGA 2 cut(s) 630, 1020
TasI AATT 3 cut(s) 468, 743, 801
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 619, 677
Tru1I TTAA 2 cut(s) 626, 855
Tru9I TTAA 2 cut(s) 626, 855
TscAI CASTG 5 cut(s) 112, 195, 295, 661, 935
TseFI GTSAC 3 cut(s) 521, 652, 986
TseI GCWGC 3 cut(s) 20, 42, 75
Tsp45I GTSAC 3 cut(s) 521, 652, 986
TspDTI ATGAA 2 cut(s) 768, 1144
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 5 cut(s) 112, 195, 295, 661, 935
Van91I CCANNNNNTGG 2 cut(s) 139, 488
VpaK11BI GGWCC 3 cut(s) 159, 566, 937
VspI ATTAAT 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 2 cut(s) 485, 1078
XspI CTAG 3 cut(s) 681, 1016, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.