Rw1G018010

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
39676033 .. 39681921
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018010.1

Sequence Viewer

Length: 1227 bp
ATGCAGAGGCTCAAGGCAGCTGTATTGGCCAGACACGGCCGCCTTGACAGTTGTCGTTTCCTCCGCCATTGCAGCAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCTGCGCTCAATGCTCTCACTACTGCAATGGGGCTTAGATTGCGGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGCGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACGAAGGGAAAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTATATCCTTTTATATATCTCCTGGGCACGTGTTTAAAGCCACATGTGGCTATCTTGAATGGCGTTACCATGGGTGGCGGTGGTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTTTTCGCTACCCCTGAAACTCTAATCGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCCGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACTTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACAGTTGAAGAGATTACAGATGCCTTGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGACTTTCTAAGCAGATTACCGGTGACTTCTGTGAGGGGGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCAAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTTCCAACAGAGTCGCGAGAAGCATTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

45.33

Weight (kDa)

5.85

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 54 - 387 3.1e-118 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 58 - 221 1.1e-21 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 136, 554
AccII CGCG 2 cut(s) 305, 1210
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 6 cut(s) 40, 64, 226, 305, 459, 490
AclWI GGATC 6 cut(s) 722, 884, 897, 1106, 1119, 1158
AcoI YGGCCR 2 cut(s) 27, 37
AcvI CACGTG 1 cut(s) 411
AfaI GTAC 2 cut(s) 236, 1013
AfiI CCNNNNNNNGG 5 cut(s) 136, 263, 554, 1107, 1108
AflIII ACRYGT 2 cut(s) 410, 424
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 9 cut(s) 143, 280, 439, 681, 743, 809, 845, 946, 1127
AhlI ACTAGT 1 cut(s) 1081
AjnI CCWGG 2 cut(s) 402, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AloI GAACNNNNNNTCC 2 cut(s) 874, 906
AluBI AGCT 3 cut(s) 20, 152, 942
AluI AGCT 3 cut(s) 20, 152, 942
Alw26I GTCTC 4 cut(s) 327, 475, 910, 934
AlwI GGATC 6 cut(s) 722, 884, 897, 1106, 1119, 1158
AlwNI CAGNNNCTG 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 3 cut(s) 27, 37, 82
ApeKI GCWGC 2 cut(s) 17, 72
AseI ATTAAT 1 cut(s) 692
AsiGI ACCGGT 1 cut(s) 1049
AspLEI GCGC 2 cut(s) 190, 305
AspS9I GGNCC 3 cut(s) 156, 632, 1003
AsuC2I CCSGG 2 cut(s) 98, 585
AsuHPI GGTGA 1 cut(s) 1064
AvaII GGWCC 3 cut(s) 156, 632, 1003
BaeGI GKGCMC 2 cut(s) 410, 1078
BalI TGGCCA 1 cut(s) 29
BamHI GGATCC 2 cut(s) 889, 1111
BbrPI CACGTG 1 cut(s) 411
BbvI GCAGC 2 cut(s) 29, 84
BccI CCATC 2 cut(s) 552, 783
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 404, 480
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 2 cut(s) 98, 585
BcoDI GTCTC 4 cut(s) 327, 475, 910, 934
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 1 cut(s) 1082
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 959
BisI GCNGC 3 cut(s) 18, 40, 73
BlsI GCNGC 3 cut(s) 19, 41, 74
Bme1390I CCNGG 4 cut(s) 98, 404, 480, 585
Bme18I GGWCC 3 cut(s) 156, 632, 1003
BmgT120I GGNCC 3 cut(s) 156, 632, 1003
BmiI GGNNCC 2 cut(s) 891, 1113
BmrFI CCNGG 4 cut(s) 98, 404, 480, 585
BmsI GCATC 4 cut(s) 541, 569, 630, 847
BoxI GACNNNNGTC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 98, 585
BsaAI YACGTR 1 cut(s) 411
BsaJI CCNNGG 5 cut(s) 403, 450, 478, 861, 893
BsaWI WCCGGW 2 cut(s) 256, 1049
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 263, 554, 1107, 1108
Bse118I RCCGGY 1 cut(s) 1049
Bse3DI GCAATG 3 cut(s) 67, 216, 492
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 404, 480
BseDI CCNNGG 5 cut(s) 403, 450, 478, 861, 893
BseGI GGATG 4 cut(s) 265, 544, 560, 775
BseLI CCNNNNNNNGG 5 cut(s) 136, 263, 554, 1107, 1108
BseMI GCAATG 3 cut(s) 67, 216, 492
BseMII CTCAG 2 cut(s) 627, 1110
BseSI GKGCMC 2 cut(s) 410, 1078
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 29, 84
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 2 cut(s) 305, 1210
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 3 cut(s) 29, 39, 84
BshTI ACCGGT 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 4 cut(s) 98, 257, 585, 1050
BslFI GGGAC 2 cut(s) 1044, 1148
BslI CCNNNNNNNGG 5 cut(s) 136, 263, 554, 1107, 1108
BsmAI GTCTC 4 cut(s) 327, 475, 910, 934
BsmFI GGGAC 2 cut(s) 1044, 1148
BsmI GAATGC 1 cut(s) 1217
BsnI GGCC 3 cut(s) 29, 39, 84
Bsp1286I GDGCHC 2 cut(s) 410, 1078
Bsp13I TCCGGA 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
Bsp19I CCATGG 2 cut(s) 450, 893
Bsp68I TCGCGA 1 cut(s) 1210
BspACI CCGC 6 cut(s) 40, 64, 226, 305, 459, 490
BspANI GGCC 3 cut(s) 29, 39, 84
BspCNI CTCAG 2 cut(s) 628, 1109
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 2 cut(s) 305, 1210
BspLI GGNNCC 2 cut(s) 891, 1113
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 6 cut(s) 722, 884, 897, 1106, 1119, 1158
BsrDI GCAATG 3 cut(s) 67, 216, 492
BsrFI RCCGGY 1 cut(s) 1049
BsrGI TGTACA 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 5 cut(s) 403, 450, 478, 861, 893
BssMI GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
BssT1I CCWWGG 3 cut(s) 450, 861, 893
Bst2UI CCWGG 2 cut(s) 404, 480
Bst4CI ACNGT 4 cut(s) 50, 234, 511, 841
Bst6I CTCTTC 2 cut(s) 73, 840
BstAUI TGTACA 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 645, 657, 877
BstDEI CTNAG 8 cut(s) 218, 592, 636, 956, 1038, 1096, 1169, 1189
BstDSI CCRYGG 2 cut(s) 450, 893
BstF5I GGATG 4 cut(s) 265, 544, 560, 775
BstFNI CGCG 2 cut(s) 305, 1210
BstHHI GCGC 2 cut(s) 190, 305
BstKTI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
BstMAI GTCTC 4 cut(s) 327, 475, 910, 934
BstMBI GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 6 cut(s) 26, 72, 81, 194, 223, 302
BstNI CCWGG 2 cut(s) 404, 480
BstNSI RCATGY 1 cut(s) 428
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 96, 402, 478, 583
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 2 cut(s) 410, 1078
BstUI CGCG 2 cut(s) 305, 1210
BstV1I GCAGC 2 cut(s) 29, 84
BstX2I RGATCY 3 cut(s) 889, 959, 1111
BstXI CCANNNNNNTGG 1 cut(s) 1144
BstYI RGATCY 3 cut(s) 889, 959, 1111
BstZI CGGCCG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 29, 39, 84
BtgI CCRYGG 2 cut(s) 450, 893
BtsCI GGATG 4 cut(s) 265, 544, 560, 775
BtsI GCAGTG 2 cut(s) 102, 292
BtsIMutI CAGTG 4 cut(s) 102, 292, 720, 1001
BtuMI TCGCGA 1 cut(s) 1210
Cac8I GCNNGC 3 cut(s) 645, 657, 877
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 2 cut(s) 190, 305
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 3 cut(s) 156, 632, 1003
Csp6I GTAC 2 cut(s) 235, 1012
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 6 cut(s) 425, 451, 761, 833, 894, 1144
CviQI GTAC 2 cut(s) 235, 1012
DdeI CTNAG 8 cut(s) 218, 592, 636, 956, 1038, 1096, 1169, 1189
DpnI GATC 7 cut(s) 120, 729, 891, 961, 993, 1113, 1152
DpnII GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 27, 37
EagI CGGCCG 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 73, 840
EarI CTCTTC 2 cut(s) 73, 840
EciI GGCGGA 1 cut(s) 53
EclXI CGGCCG 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 450, 861, 893
Eco147I AGGCCT 1 cut(s) 84
Eco47I GGWCC 3 cut(s) 156, 632, 1003
Eco52I CGGCCG 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 402, 478
EcoT14I CCWWGG 3 cut(s) 450, 861, 893
ErhI CCWWGG 3 cut(s) 450, 861, 893
FaeI CATG 6 cut(s) 428, 454, 764, 836, 897, 1147
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 2 cut(s) 1044, 1148
FatI CATG 6 cut(s) 424, 450, 760, 832, 893, 1143
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 3 cut(s) 18, 40, 73
FokI GGATG 4 cut(s) 272, 531, 547, 762
Fsp4HI GCNGC 3 cut(s) 18, 40, 73
FspBI CTAG 1 cut(s) 1082
GlaI GCGC 2 cut(s) 189, 304
GluI GCNGC 3 cut(s) 18, 40, 73
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 3 cut(s) 29, 39, 84
HapII CCGG 4 cut(s) 98, 257, 585, 1050
HhaI GCGC 2 cut(s) 190, 305
Hin1II CATG 6 cut(s) 428, 454, 764, 836, 897, 1147
Hin6I GCGC 2 cut(s) 188, 303
HinP1I GCGC 2 cut(s) 188, 303
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 685, 1094, 1205
HpaII CCGG 4 cut(s) 98, 257, 585, 1050
HphI GGTGA 1 cut(s) 1064
Hpy188I TCNGA 2 cut(s) 984, 1226
Hpy188III TCNNGA 7 cut(s) 122, 159, 257, 436, 548, 779, 1209
HpyAV CCTTC 7 cut(s) 137, 192, 274, 338, 741, 940, 965
HpyCH4III ACNGT 4 cut(s) 50, 234, 511, 841
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 8 cut(s) 4, 72, 167, 209, 275, 497, 673, 900
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 72, 81, 194, 223, 302
HpyF3I CTNAG 8 cut(s) 218, 592, 636, 956, 1038, 1096, 1169, 1189
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 6 cut(s) 428, 454, 764, 836, 897, 1147
HspAI GCGC 2 cut(s) 188, 303
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
Lsp1109I GCAGC 2 cut(s) 29, 84
LweI GCATC 4 cut(s) 541, 569, 630, 847
MaeI CTAG 1 cut(s) 1082
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 5 cut(s) 445, 587, 718, 1052, 1132
MalI GATC 7 cut(s) 120, 729, 891, 961, 993, 1113, 1152
MboI GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
MboII GAAGA 7 cut(s) 90, 260, 368, 710, 713, 857, 987
MflI RGATCY 3 cut(s) 889, 959, 1111
MhlI GDGCHC 2 cut(s) 410, 1078
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 809, 867
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 1088, 1214
MmeI TCCRAC 1 cut(s) 1223
MnlI CCTC 8 cut(s) 71, 74, 95, 119, 865, 1057, 1125, 1176
Mox20I TGGCCA 1 cut(s) 29
MroI TCCGGA 1 cut(s) 256
MscI TGGCCA 1 cut(s) 29
MseI TTAA 3 cut(s) 416, 692, 921
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 4 cut(s) 98, 257, 585, 1050
MspR9I CCNGG 4 cut(s) 98, 404, 480, 585
Mva1269I GAATGC 1 cut(s) 1217
MvaI CCWGG 2 cut(s) 404, 480
MvnI CGCG 2 cut(s) 305, 1210
MwoI GCNNNNNNNGC 6 cut(s) 26, 72, 81, 194, 223, 302
NciI CCSGG 2 cut(s) 98, 585
NcoI CCATGG 2 cut(s) 450, 893
NdeII GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
NlaIII CATG 6 cut(s) 428, 454, 764, 836, 897, 1147
NlaIV GGNNCC 2 cut(s) 891, 1113
NmuCI GTSAC 3 cut(s) 587, 718, 1052
NruI TCGCGA 1 cut(s) 1210
NspI RCATGY 1 cut(s) 428
PceI AGGCCT 1 cut(s) 84
PciI ACATGT 1 cut(s) 424
PctI GAATGC 1 cut(s) 1217
PfeI GAWTC 1 cut(s) 685
PflMI CCANNNNNTGG 2 cut(s) 136, 554
PfoI TCCNGGA 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 1049
PkrI GCNGC 3 cut(s) 19, 41, 74
PleI GAGTC 2 cut(s) 1088, 1213
PmaCI CACGTG 1 cut(s) 411
PmlI CACGTG 1 cut(s) 411
PpsI GAGTC 2 cut(s) 1088, 1213
Ppu21I YACGTR 1 cut(s) 411
PscI ACATGT 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 402, 478
PspCI CACGTG 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 402, 478
PspN4I GGNNCC 2 cut(s) 891, 1113
PspPI GGNCC 3 cut(s) 156, 632, 1003
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 3 cut(s) 889, 959, 1111
PvuII CAGCTG 1 cut(s) 20
RruI TCGCGA 1 cut(s) 1210
RsaI GTAC 2 cut(s) 236, 1013
RsaNI GTAC 2 cut(s) 235, 1012
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 416, 692, 921
SatI GCNGC 3 cut(s) 18, 40, 73
Sau3AI GATC 7 cut(s) 118, 727, 889, 959, 991, 1111, 1150
Sau96I GGNCC 3 cut(s) 156, 632, 1003
SchI GAGTC 2 cut(s) 1088, 1214
ScrFI CCNGG 4 cut(s) 98, 404, 480, 585
SduI GDGCHC 2 cut(s) 410, 1078
SetI ASST 8 cut(s) 22, 154, 184, 413, 573, 637, 944, 951
SfaNI GCATC 4 cut(s) 541, 569, 630, 847
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 3 cut(s) 156, 632, 1003
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SpeI ACTAGT 1 cut(s) 1081
Sse9I AATT 2 cut(s) 809, 867
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 6 cut(s) 40, 64, 226, 305, 459, 490
SspI AATATT 1 cut(s) 1157
SspMI CTAG 1 cut(s) 1082
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 4 cut(s) 96, 402, 478, 583
StyI CCWWGG 3 cut(s) 450, 861, 893
TaaI ACNGT 4 cut(s) 50, 234, 511, 841
TaiI ACGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 696, 1086
TasI AATT 2 cut(s) 809, 867
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 3 cut(s) 416, 692, 921
Tru9I TTAA 3 cut(s) 416, 692, 921
TscAI CASTG 4 cut(s) 109, 292, 727, 1001
TseFI GTSAC 3 cut(s) 587, 718, 1052
TseI GCWGC 2 cut(s) 17, 72
Tsp45I GTSAC 3 cut(s) 587, 718, 1052
TspDTI ATGAA 2 cut(s) 834, 1210
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 4 cut(s) 109, 292, 727, 1001
Van91I CCANNNNNTGG 2 cut(s) 136, 554
VpaK11BI GGWCC 3 cut(s) 156, 632, 1003
VspI ATTAAT 1 cut(s) 692
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 2 cut(s) 551, 1144
XspI CTAG 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.