Rh1DG209300

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004184
Physical Location & Seq
Reverse (-)
40792167 .. 40796527
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG209300.1

Sequence Viewer

Length: 630 bp
ATGCAGAGGCTCAAGGCAGCTGTATTGGCCACACATGGCGGCCTTGACAGTTGTCGTTTCCTCCGCTATTGCAGCAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCCCTTAACGATGATCTTGATCACCAAGACAATTGCTCACTATCCATTTCTTCAATTTTCGCGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGGCCTACAGTGCTCAGTGCTCTCAATTCTGCAATGTGGAGGTTTAACTTTGCTGACAGTGCTTGTAATAGAAAAACTTCCAGAGCTGCACTCTCTACCACAAGGGCTCTCTGCATCAGCTAGTCTGTCTTCTCTGGAGGTCTTGTCTTGCCCCAAGCTTTGTTCACTGCCTTTGGAGATGGGAAACCTCACTGCACTGAAATCTTTGACCATTCGTTGGTGTGATGAGTTGTCCTTTCTGCCACAGAGTTTGCAGAACCTCAAAGCTCTGGAGTCACTAGAGATTAGTGACTGTCATAGTATAATCTCGATGCCAGATGGTGCAATTGGAGGTTTGAGGTCCCTTCAAACTTTGTTCATTCAGAACTGCAGTAATCTGACTTCTTTGTCATCGAGTCTGGAAACTCGCTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200
Pfam Domains
Protein Families
ECH_2

Protein Analysis

209

Amino Acids

22.64

Weight (kDa)

5.77

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 85 - 200 1.8e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
AccB7I CCANNNNNTGG 1 cut(s) 429
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 39, 64
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 429
AgsI TTSAA 3 cut(s) 159, 178, 560
AluBI AGCT 6 cut(s) 20, 187, 298, 332, 370, 479
AluI AGCT 6 cut(s) 20, 187, 298, 332, 370, 479
Alw21I GWGCWC 2 cut(s) 227, 234
AoxI GGCC 4 cut(s) 27, 40, 82, 214
ApeKI GCWGC 3 cut(s) 17, 72, 298
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 2 cut(s) 191, 552
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 191, 552
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 577, 609
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 227, 234
BbvI GCAGC 3 cut(s) 29, 84, 285
BccI CCATC 2 cut(s) 385, 524
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 2 cut(s) 333, 491
BfmI CTRYAG 3 cut(s) 200, 218, 580
BisI GCNGC 4 cut(s) 18, 40, 73, 299
BlsI GCNGC 4 cut(s) 19, 41, 74, 300
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 191, 552
BmgT120I GGNCC 2 cut(s) 191, 552
BmiI GGNNCC 1 cut(s) 554
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 335, 513
BoxI GACNNNNGTC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 2 cut(s) 368, 503
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 29, 84, 285
BsgI GTGCAG 2 cut(s) 284, 390
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 4 cut(s) 29, 42, 84, 216
BsiHKAI GWGCWC 2 cut(s) 227, 234
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 4 cut(s) 29, 42, 84, 216
Bsp1286I GDGCHC 3 cut(s) 227, 234, 321
Bsp143I GATC 2 cut(s) 118, 124
BspACI CCGC 2 cut(s) 39, 64
BspANI GGCC 4 cut(s) 29, 42, 84, 216
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 554
BspMAI CTGCAG 2 cut(s) 204, 584
BsrDI GCAATG 1 cut(s) 251
BssMI GATC 2 cut(s) 118, 124
Bst4CI ACNGT 4 cut(s) 50, 222, 271, 506
Bst6I CTCTTC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 121, 127
BstMBI GATC 2 cut(s) 118, 124
BstMWI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 222, 271
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 3 cut(s) 200, 218, 580
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 29, 84, 285
BstV2I GAAGAC 1 cut(s) 333
BsuRI GGCC 4 cut(s) 29, 42, 84, 216
BtsI GCAGTG 3 cut(s) 102, 377, 402
BtsIMutI CAGTG 7 cut(s) 102, 227, 234, 276, 377, 402, 407
Cfr13I GGNCC 2 cut(s) 191, 552
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 1 cut(s) 35
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 120, 126
DpnII GATC 2 cut(s) 118, 124
DrdI GACNNNNNNGTC 1 cut(s) 598
DseDI GACNNNNNNGTC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco147I AGGCCT 2 cut(s) 84, 216
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 191, 552
EcoO109I RGGNCCY 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 510, 515
FaqI GGGAC 1 cut(s) 538
FatI CATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 18, 40, 73, 299
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 4 cut(s) 18, 40, 73, 299
FspBI CTAG 2 cut(s) 333, 491
GluI GCNGC 4 cut(s) 18, 40, 73, 299
GsuI CTGGAG 2 cut(s) 368, 503
HaeIII GGCC 4 cut(s) 29, 42, 84, 216
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 38
HindIII AAGCTT 2 cut(s) 185, 368
HinfI GANTC 2 cut(s) 485, 607
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 576, 591
Hpy188III TCNNGA 7 cut(s) 122, 194, 293, 347, 482, 520, 611
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 172, 566
HpyCH4III ACNGT 4 cut(s) 50, 222, 271, 506
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 222, 271
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 118, 124
LpnPI CCDG 8 cut(s) 111, 198, 207, 306, 332, 467, 540, 596
Lsp1109I GCAGC 3 cut(s) 29, 84, 285
LweI GCATC 2 cut(s) 335, 513
MaeI CTAG 2 cut(s) 333, 491
MaeIII GTNAC 2 cut(s) 486, 500
MalI GATC 2 cut(s) 120, 126
MboI GATC 2 cut(s) 118, 124
MboII GAAGA 3 cut(s) 90, 147, 333
MfeI CAATTG 2 cut(s) 136, 537
MhlI GDGCHC 3 cut(s) 227, 234, 321
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 136, 159, 237, 537
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 494, 616
MnlI CCTC 9 cut(s) 71, 74, 95, 245, 343, 410, 482, 536, 543
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 29
MseI TTAA 2 cut(s) 111, 257
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 2 cut(s) 136, 537
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 222, 271
NciI CCSGG 1 cut(s) 98
NdeII GATC 2 cut(s) 118, 124
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 554
NmuCI GTSAC 2 cut(s) 486, 500
PceI AGGCCT 2 cut(s) 84, 216
PdmI GAANNNNTTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 4 cut(s) 19, 41, 74, 300
PleI GAGTC 2 cut(s) 493, 615
PpsI GAGTC 2 cut(s) 493, 615
PpuMI RGGWCCY 1 cut(s) 552
PshAI GACNNNNGTC 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 554
PspPI GGNCC 2 cut(s) 191, 552
PspPPI RGGWCCY 1 cut(s) 552
PstI CTGCAG 2 cut(s) 204, 584
PvuII CAGCTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 111, 257
SatI GCNGC 4 cut(s) 18, 40, 73, 299
Sau3AI GATC 2 cut(s) 118, 124
Sau96I GGNCC 2 cut(s) 191, 552
SchI GAGTC 2 cut(s) 494, 616
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 3 cut(s) 227, 234, 321
SfaNI GCATC 2 cut(s) 335, 513
SfcI CTRYAG 3 cut(s) 200, 218, 580
SinI GGWCC 2 cut(s) 191, 552
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 4 cut(s) 136, 159, 237, 537
SseBI AGGCCT 2 cut(s) 84, 216
SsiI CCGC 2 cut(s) 39, 64
SspMI CTAG 2 cut(s) 333, 491
StuI AGGCCT 2 cut(s) 84, 216
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 4 cut(s) 50, 222, 271, 506
TaqI TCGA 2 cut(s) 521, 605
TasI AATT 4 cut(s) 136, 159, 237, 537
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 111, 257
Tru9I TTAA 2 cut(s) 111, 257
TscAI CASTG 7 cut(s) 109, 227, 234, 276, 384, 409, 414
TseFI GTSAC 2 cut(s) 486, 500
TseI GCWGC 3 cut(s) 17, 72, 298
Tsp45I GTSAC 2 cut(s) 486, 500
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 7 cut(s) 109, 227, 234, 276, 384, 409, 414
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 2 cut(s) 191, 552
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 333, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.