Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Reverse (-)

41437708 .. 41439745

Gene Structure 2038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGCAGAGGCTCAAGGTAGCTGTATTGGCCAGACATGGCGGCCTTGACAGTTGTCGTTTCCTCCGCCATTGCAGCAGAAGAGGGCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCTGTGCTCAATGCTCTCACTACTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACGAAGGGAGAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTGTATCCTTTTATATATCTCCTGGGCACATGTTTAAAGCCACATGTGGCTATCTTGAATGGCGTTACCATGGGTGGCGGTGCTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTATGTAACAGGGATCCTTGTACATATAATTATCCTTTTGTTCTTCCTTGTATGAGGATATCATCAATTACTTTGCAAAATCTTCCTAATGTATTTCTGACTTGTGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

208

Amino Acids

22.94

Weight (kDa)

8.84

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	55 - 173	2.2e-41	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	59 - 171	9.1e-14	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	5 cut(s)	42, 67, 308, 462, 493
AclWI	GGATC	2 cut(s)	521, 534
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	2 cut(s)	239, 535
AfiI	CCNNNNNNNGG	2 cut(s)	139, 266
AflIII	ACRYGT	2 cut(s)	413, 427
AgsI	TTSAA	3 cut(s)	146, 283, 442
AjnI	CCWGG	2 cut(s)	405, 481
AluBI	AGCT	2 cut(s)	23, 155
AluI	AGCT	2 cut(s)	23, 155
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	330, 478
AlwI	GGATC	2 cut(s)	521, 534
AlwNI	CAGNNNCTG	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	30, 43
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	407, 483
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	330, 478
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	2 cut(s)	43, 76
BlsI	GCNGC	2 cut(s)	44, 77
Bme1390I	CCNGG	3 cut(s)	101, 407, 483
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	3 cut(s)	101, 407, 483
BoxI	GACNNNNGTC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	406, 453, 481
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 266
Bse3DI	GCAATG	3 cut(s)	70, 219, 495
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	407, 483
BseDI	CCNNGG	3 cut(s)	406, 453, 481
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	139, 266
BseMI	GCAATG	3 cut(s)	70, 219, 495
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	2 cut(s)	32, 45
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	101, 260
BslI	CCNNNNNNNGG	2 cut(s)	139, 266
BsmAI	GTCTC	2 cut(s)	330, 478
BsnI	GGCC	2 cut(s)	32, 45
Bsp1286I	GDGCHC	3 cut(s)	90, 195, 413
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	2 cut(s)	237, 533
Bsp143I	GATC	2 cut(s)	121, 526
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	5 cut(s)	42, 67, 308, 462, 493
BspANI	GGCC	2 cut(s)	32, 45
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	521, 534
BsrDI	GCAATG	3 cut(s)	70, 219, 495
BsrGI	TGTACA	2 cut(s)	237, 533
BssECI	CCNNGG	3 cut(s)	406, 453, 481
BssMI	GATC	2 cut(s)	121, 526
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	407, 483
Bst4CI	ACNGT	3 cut(s)	53, 237, 514
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstAUI	TGTACA	2 cut(s)	237, 533
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	124, 529
BstMAI	GTCTC	2 cut(s)	330, 478
BstMBI	GATC	2 cut(s)	121, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 75, 226, 305
BstNI	CCWGG	2 cut(s)	407, 483
BstNSI	RCATGY	2 cut(s)	417, 431
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	99, 405, 481
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	32, 45
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	2 cut(s)	105, 295
BtsIMutI	CAGTG	2 cut(s)	105, 295
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	238, 534
CviAII	CATG	4 cut(s)	38, 414, 428, 454
CviQI	GTAC	2 cut(s)	238, 534
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	123, 528
DpnII	GATC	2 cut(s)	121, 526
DraI	TTTAAA	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	619
DseDI	GACNNNNNNGTC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	405, 481
EcoRV	GATATC	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	41, 417, 431, 457
FatI	CATG	4 cut(s)	37, 413, 427, 453
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	43, 76
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	43, 76
GluI	GCNGC	2 cut(s)	43, 76
HaeIII	GGCC	2 cut(s)	32, 45
HapII	CCGG	2 cut(s)	101, 260
Hin1II	CATG	4 cut(s)	41, 417, 431, 457
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	1 cut(s)	620
HpaII	CCGG	2 cut(s)	101, 260
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	5 cut(s)	125, 162, 260, 439, 624
HpyAV	CCTTC	4 cut(s)	140, 195, 277, 341
HpyCH4III	ACNGT	3 cut(s)	53, 237, 514
HpyCH4V	TGCA	8 cut(s)	7, 75, 170, 212, 229, 278, 500, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 75, 226, 305
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	41, 417, 431, 457
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	121, 526
Lsp1109I	GCAGC	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	448, 518
MalI	GATC	2 cut(s)	123, 528
MboI	GATC	2 cut(s)	121, 526
MboII	GAAGA	5 cut(s)	93, 263, 371, 548, 587
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	90, 195, 413
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	541, 579
MluNI	TGGCCA	1 cut(s)	32
MnlI	CCTC	5 cut(s)	3, 74, 77, 122, 561
Mox20I	TGGCCA	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	32
MspI	CCGG	2 cut(s)	101, 260
MspR9I	CCNGG	3 cut(s)	101, 407, 483
MvaI	CCWGG	2 cut(s)	407, 483
MwoI	GCNNNNNNNGC	4 cut(s)	29, 75, 226, 305
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	121, 526
NlaIII	CATG	4 cut(s)	41, 417, 431, 457
NlaIV	GGNNCC	1 cut(s)	528
NspI	RCATGY	2 cut(s)	417, 431
PciI	ACATGT	2 cut(s)	413, 427
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	44, 77
PscI	ACATGT	2 cut(s)	413, 427
PshAI	GACNNNNGTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	405, 481
PspGI	CCWGG	2 cut(s)	405, 481
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	239, 535
RsaNI	GTAC	2 cut(s)	238, 534
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	2 cut(s)	43, 76
Sau3AI	GATC	2 cut(s)	121, 526
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	3 cut(s)	101, 407, 483
SduI	GDGCHC	3 cut(s)	90, 195, 413
SetI	ASST	4 cut(s)	21, 25, 157, 187
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	541, 579
SsiI	CCGC	5 cut(s)	42, 67, 308, 462, 493
StyD4I	CCNGG	3 cut(s)	99, 405, 481
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	53, 237, 514
TasI	AATT	2 cut(s)	541, 579
TatI	WGTACW	2 cut(s)	237, 533
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	112, 295
TseI	GCWGC	1 cut(s)	75
TspRI	CASTG	2 cut(s)	112, 295
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	2 cut(s)	417, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.