Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Forward (+)

27284361 .. 27284990

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAACTTGAGATAATCTCACCAGGTGTCATATCAAGTTTATCCCGACTAGAAGAGTTGTATATGTGGGATAGCTTTGAAGATTGGGTGATTGAGAAACTAGCCTCAACAGAAACAACCGATTGGATTTCTCAATTGGAAGCTGAGACAAGAGCTAAACCAGAAGAACTCCACGTGGAACTGGAGATGTGGAAGAGATTCAACAGATTGGCGGTTGAGCAACCAGCATATCTAGGAAAGATGTACAGAGAGGAGGTTCAAAATTTATATACGAAAGACGAGGAGCACACATACAGAAGGTGGGCCAACTCCATGGACTGGAAAATTGGGATACTTTCAGAGCTACTTTCCTTGTCCAGTTTGACTACTTTAGAAGTTGTTCTACCACCGGTTGATAGTCTGGTAACCAGCAAGCTATTTGACAAGCTTGAAAGATTTAAGATCTCTATAGGATGGAAGGAGCATATATATAATTGGGAATTAGAGCCTTACGGAAACTACTTGAGAGTTCATGATCTTGATGCAAGCTCTCTTGTGAGTACTGGAATCACTTTGTTGCTAAAGAAAACCAAGACTTTTGAGTTAAAAATGAAGAATTTGACAGAACCTCTGAATGTCTTAGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

209

Amino Acids

24.56

Weight (kDa)

5.01

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	262, 595
AcvI	CACGTG	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	245, 541
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	80, 202, 260, 431
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	7 cut(s)	75, 143, 155, 343, 415, 427, 528
AluI	AGCT	7 cut(s)	75, 143, 155, 343, 415, 427, 528
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	2 cut(s)	262, 595
AsiGI	ACCGGT	1 cut(s)	388
Asp700I	GAANNNNTTC	2 cut(s)	197, 378
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	12, 100
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbrPI	CACGTG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	3 cut(s)	50, 101, 233
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	511
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	29, 523
BsaAI	YACGTR	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	4 cut(s)	186, 323, 357, 547
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	4 cut(s)	186, 323, 357, 547
BseRI	GAGGAG	2 cut(s)	266, 296
BshFI	GGCC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	441, 514
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	4 cut(s)	186, 323, 357, 547
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	441, 514
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	48, 188
BstAUI	TGTACA	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	413, 526
BstDEI	CTNAG	2 cut(s)	144, 619
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	2 cut(s)	444, 517
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	441, 514
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	413, 526
CciI	TCATGA	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	244, 540
CspAI	ACCGGT	1 cut(s)	388
CviAII	CATG	2 cut(s)	313, 512
CviQI	GTAC	2 cut(s)	244, 540
DdeI	CTNAG	2 cut(s)	144, 619
DpnI	GATC	2 cut(s)	443, 516
DpnII	GATC	2 cut(s)	441, 514
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	48, 188
EarI	CTCTTC	2 cut(s)	48, 188
Eco130I	CCWWGG	1 cut(s)	312
Eco72I	CACGTG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	316, 515
FatI	CATG	2 cut(s)	312, 511
FokI	GGATG	1 cut(s)	465
FspBI	CTAG	3 cut(s)	50, 101, 233
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	2 cut(s)	316, 515
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	2 cut(s)	198, 546
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	12, 100
Hpy188I	TCNGA	2 cut(s)	340, 612
Hpy188III	TCNNGA	3 cut(s)	45, 512, 518
HpyAV	CCTTC	2 cut(s)	291, 451
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	144, 619
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	316, 515
Kzo9I	GATC	2 cut(s)	441, 514
LmnI	GCTCC	2 cut(s)	283, 460
LweI	GCATC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	3 cut(s)	50, 101, 233
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	443, 516
MboI	GATC	2 cut(s)	441, 514
MboII	GAAGA	5 cut(s)	65, 92, 176, 205, 604
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	6 cut(s)	134, 262, 324, 472, 479, 595
MnlI	CCTC	5 cut(s)	115, 244, 247, 274, 618
MroXI	GAANNNNTTC	2 cut(s)	197, 378
MseI	TTAA	2 cut(s)	438, 584
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	441, 514
NlaIII	CATG	2 cut(s)	316, 515
PagI	TCATGA	1 cut(s)	511
PdmI	GAANNNNTTC	2 cut(s)	197, 378
PfeI	GAWTC	2 cut(s)	198, 546
PflMI	CCANNNNNTGG	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	2 cut(s)	245, 541
RsaNI	GTAC	2 cut(s)	244, 540
SaqAI	TTAA	2 cut(s)	438, 584
Sau3AI	GATC	2 cut(s)	441, 514
Sau96I	GGNCC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	8, 502
SmoI	CTYRAG	2 cut(s)	8, 502
Sse9I	AATT	6 cut(s)	134, 262, 324, 472, 479, 595
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	3 cut(s)	50, 101, 233
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	177
TasI	AATT	6 cut(s)	134, 262, 324, 472, 479, 595
TatI	WGTACW	2 cut(s)	243, 539
TfiI	GAWTC	2 cut(s)	198, 546
Tru1I	TTAA	2 cut(s)	438, 584
Tru9I	TTAA	2 cut(s)	438, 584
TspDTI	ATGAA	3 cut(s)	17, 500, 605
TspGWI	ACGGA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	262, 595
XmnI	GAANNNNTTC	2 cut(s)	197, 378
XspI	CTAG	3 cut(s)	50, 101, 233
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.