Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Reverse (-)

28597844 .. 28632389

Gene Structure 34546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG179200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCGGCCTTGACAGTTGTCGTTTCCTCCGCTATTGCAGCAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCCCTTAACGATGATCTTGATCACCAAGACAATTGCTCACTATCCATTTCTTCAATTTTCGCGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGGCCTACAGTGCTCAGTGCTCTCAATTCTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACCAAGGGAGAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTATATCCTTTTATGTATCTCCTGAGCACATGTTTAAAGCCACATGTGGCTATCTTGAATGGCGTTACCATGGGTGGCGGTGGTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTTTTCGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCCGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACTTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACAGTTGAAGAGATTATAGATGCCTTGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGAATTTCTAAGCAGATTACTGGTGACTTCTGTGAGGGGGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCAAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTTCCAACAGAGTCGCGAGAAGCATTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

404

Amino Acids

44.71

Weight (kDa)

5.69

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	50 - 383	7.2e-117	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	54 - 217	6.2e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	2 cut(s)	133, 1198
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	5 cut(s)	5, 30, 293, 447, 478
AclWI	GGATC	6 cut(s)	710, 872, 885, 1094, 1107, 1146
AcsI	RAATTY	1 cut(s)	1020
AfaI	GTAC	2 cut(s)	224, 1001
AfiI	CCNNNNNNNGG	4 cut(s)	251, 542, 1095, 1096
AflIII	ACRYGT	2 cut(s)	398, 412
AgsI	TTSAA	9 cut(s)	125, 268, 427, 669, 731, 797, 833, 934, 1115
AhlI	ACTAGT	1 cut(s)	1069
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	4 cut(s)	507, 539, 678, 710
AloI	GAACNNNNNNTCC	2 cut(s)	862, 894
AluBI	AGCT	2 cut(s)	140, 930
AluI	AGCT	2 cut(s)	140, 930
Alw21I	GWGCWC	3 cut(s)	180, 187, 398
Alw26I	GTCTC	4 cut(s)	315, 463, 898, 922
AlwI	GGATC	6 cut(s)	710, 872, 885, 1094, 1107, 1146
AlwNI	CAGNNNCTG	2 cut(s)	220, 542
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	3 cut(s)	6, 48, 167
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	1020
AseI	ATTAAT	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	3 cut(s)	144, 620, 991
AsuC2I	CCSGG	2 cut(s)	64, 573
AsuHPI	GGTGA	2 cut(s)	85, 1052
AvaII	GGWCC	3 cut(s)	144, 620, 991
BaeGI	GKGCMC	1 cut(s)	1066
BamHI	GGATCC	2 cut(s)	877, 1099
Bbv12I	GWGCWC	3 cut(s)	180, 187, 398
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	540, 771
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	2 cut(s)	90, 979
BcnI	CCSGG	2 cut(s)	64, 573
BcoDI	GTCTC	4 cut(s)	315, 463, 898, 922
BcuI	ACTAGT	1 cut(s)	1069
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	2 cut(s)	153, 171
BglII	AGATCT	1 cut(s)	947
BisI	GCNGC	2 cut(s)	6, 39
BlsI	GCNGC	2 cut(s)	7, 40
Bme1390I	CCNGG	3 cut(s)	64, 468, 573
Bme18I	GGWCC	3 cut(s)	144, 620, 991
BmgT120I	GGNCC	3 cut(s)	144, 620, 991
BmiI	GGNNCC	2 cut(s)	879, 1101
BmrFI	CCNGG	3 cut(s)	64, 468, 573
BmsI	GCATC	4 cut(s)	529, 557, 618, 835
BoxI	GACNNNNGTC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	392
BpuMI	CCSGG	2 cut(s)	64, 573
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	331, 438, 466, 849, 881
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 542, 1095, 1096
Bse1I	ACTGG	1 cut(s)	1042
Bse3DI	GCAATG	2 cut(s)	204, 480
Bse8I	GATNNNNATC	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	5 cut(s)	331, 438, 466, 849, 881
BseGI	GGATG	4 cut(s)	253, 532, 548, 763
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	4 cut(s)	251, 542, 1095, 1096
BseMI	GCAATG	2 cut(s)	204, 480
BseMII	CTCAG	4 cut(s)	193, 383, 615, 1098
BseNI	ACTGG	1 cut(s)	1042
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	133, 1198
BshFI	GGCC	3 cut(s)	8, 50, 169
BsiHKAI	GWGCWC	3 cut(s)	180, 187, 398
BsiSI	CCGG	3 cut(s)	64, 245, 573
BslFI	GGGAC	1 cut(s)	1136
BslI	CCNNNNNNNGG	4 cut(s)	251, 542, 1095, 1096
BsmAI	GTCTC	4 cut(s)	315, 463, 898, 922
BsmFI	GGGAC	1 cut(s)	1136
BsmI	GAATGC	1 cut(s)	1205
BsnI	GGCC	3 cut(s)	8, 50, 169
Bsp1286I	GDGCHC	4 cut(s)	180, 187, 398, 1066
Bsp13I	TCCGGA	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
Bsp19I	CCATGG	2 cut(s)	438, 881
Bsp68I	TCGCGA	1 cut(s)	1198
BspACI	CCGC	5 cut(s)	5, 30, 293, 447, 478
BspANI	GGCC	3 cut(s)	8, 50, 169
BspCNI	CTCAG	4 cut(s)	192, 384, 616, 1097
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	133, 1198
BspLI	GGNNCC	2 cut(s)	879, 1101
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	6 cut(s)	710, 872, 885, 1094, 1107, 1146
BsrDI	GCAATG	2 cut(s)	204, 480
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	1042
BssECI	CCNNGG	5 cut(s)	331, 438, 466, 849, 881
BssMI	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
BssT1I	CCWWGG	4 cut(s)	331, 438, 849, 881
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	5 cut(s)	16, 175, 222, 499, 829
Bst6I	CTCTTC	2 cut(s)	39, 828
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	633, 645, 865
BstDSI	CCRYGG	2 cut(s)	438, 881
BstF5I	GGATG	4 cut(s)	253, 532, 548, 763
BstFNI	CGCG	2 cut(s)	133, 1198
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	8 cut(s)	87, 93, 718, 880, 950, 982, 1102, 1141
BstMAI	GTCTC	4 cut(s)	315, 463, 898, 922
BstMBI	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 47, 175, 211, 290
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	2 cut(s)	402, 416
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	62, 466, 571
BstSFI	CTRYAG	2 cut(s)	153, 171
BstSLI	GKGCMC	1 cut(s)	1066
BstUI	CGCG	2 cut(s)	133, 1198
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	877, 947, 1099
BstXI	CCANNNNNNTGG	1 cut(s)	1132
BstYI	RGATCY	3 cut(s)	877, 947, 1099
BsuRI	GGCC	3 cut(s)	8, 50, 169
BtgI	CCRYGG	2 cut(s)	438, 881
BtsCI	GGATG	4 cut(s)	253, 532, 548, 763
BtsI	GCAGTG	2 cut(s)	68, 280
BtsIMutI	CAGTG	6 cut(s)	68, 180, 187, 280, 708, 989
BtuMI	TCGCGA	1 cut(s)	1198
Cac8I	GCNNGC	3 cut(s)	633, 645, 865
CaiI	CAGNNNCTG	2 cut(s)	220, 542
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	144, 620, 991
Csp6I	GTAC	2 cut(s)	223, 1000
CviAII	CATG	7 cut(s)	399, 413, 439, 749, 821, 882, 1132
CviQI	GTAC	2 cut(s)	223, 1000
DpnI	GATC	8 cut(s)	86, 92, 717, 879, 949, 981, 1101, 1140
DpnII	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	39, 828
EarI	CTCTTC	2 cut(s)	39, 828
Eco130I	CCWWGG	4 cut(s)	331, 438, 849, 881
Eco147I	AGGCCT	2 cut(s)	50, 169
Eco47I	GGWCC	3 cut(s)	144, 620, 991
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	4 cut(s)	331, 438, 849, 881
ErhI	CCWWGG	4 cut(s)	331, 438, 849, 881
FaeI	CATG	7 cut(s)	402, 416, 442, 752, 824, 885, 1135
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	1 cut(s)	1136
FatI	CATG	7 cut(s)	398, 412, 438, 748, 820, 881, 1131
FauI	CCCGC	1 cut(s)	286
FbaI	TGATCA	2 cut(s)	90, 979
Fnu4HI	GCNGC	2 cut(s)	6, 39
FokI	GGATG	4 cut(s)	260, 519, 535, 750
Fsp4HI	GCNGC	2 cut(s)	6, 39
FspBI	CTAG	1 cut(s)	1070
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	6, 39
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	8, 50, 169
HapII	CCGG	3 cut(s)	64, 245, 573
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	7 cut(s)	402, 416, 442, 752, 824, 885, 1135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	3 cut(s)	673, 1082, 1193
HpaII	CCGG	3 cut(s)	64, 245, 573
HphI	GGTGA	2 cut(s)	85, 1052
Hpy188I	TCNGA	2 cut(s)	972, 1214
Hpy188III	TCNNGA	8 cut(s)	88, 147, 245, 391, 424, 536, 767, 1197
HpyAV	CCTTC	4 cut(s)	262, 729, 928, 953
HpyCH4III	ACNGT	5 cut(s)	16, 175, 222, 499, 829
HpyCH4V	TGCA	8 cut(s)	38, 155, 197, 214, 263, 485, 661, 888
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 47, 175, 211, 290
Hsp92II	CATG	7 cut(s)	402, 416, 442, 752, 824, 885, 1135
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	2 cut(s)	90, 979
Kzo9I	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	4 cut(s)	529, 557, 618, 835
MaeI	CTAG	1 cut(s)	1070
MaeIII	GTNAC	5 cut(s)	433, 575, 706, 1040, 1120
MalI	GATC	8 cut(s)	86, 92, 717, 879, 949, 981, 1101, 1140
MboI	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
MboII	GAAGA	8 cut(s)	56, 113, 248, 356, 698, 701, 845, 975
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	3 cut(s)	877, 947, 1099
MhlI	GDGCHC	4 cut(s)	180, 187, 398, 1066
MluCI	AATT	7 cut(s)	102, 125, 190, 522, 797, 855, 1020
MlyI	GAGTC	2 cut(s)	1076, 1202
MmeI	TCCRAC	1 cut(s)	1211
MnlI	CCTC	7 cut(s)	37, 40, 61, 853, 1045, 1113, 1164
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	4 cut(s)	77, 404, 680, 909
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	3 cut(s)	64, 245, 573
MspR9I	CCNGG	3 cut(s)	64, 468, 573
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	1205
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	2 cut(s)	133, 1198
MwoI	GCNNNNNNNGC	5 cut(s)	38, 47, 175, 211, 290
NciI	CCSGG	2 cut(s)	64, 573
NcoI	CCATGG	2 cut(s)	438, 881
NdeII	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
NlaIII	CATG	7 cut(s)	402, 416, 442, 752, 824, 885, 1135
NlaIV	GGNNCC	2 cut(s)	879, 1101
NmuCI	GTSAC	3 cut(s)	575, 706, 1040
NruI	TCGCGA	1 cut(s)	1198
NspI	RCATGY	2 cut(s)	402, 416
PceI	AGGCCT	2 cut(s)	50, 169
PciI	ACATGT	2 cut(s)	398, 412
PctI	GAATGC	1 cut(s)	1205
PfeI	GAWTC	1 cut(s)	673
PflMI	CCANNNNNTGG	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	7, 40
PleI	GAGTC	2 cut(s)	1076, 1201
PpsI	GAGTC	2 cut(s)	1076, 1201
PscI	ACATGT	2 cut(s)	398, 412
PshAI	GACNNNNGTC	1 cut(s)	17
PshBI	ATTAAT	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	879, 1101
PspPI	GGNCC	3 cut(s)	144, 620, 991
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	2 cut(s)	220, 542
PsuI	RGATCY	3 cut(s)	877, 947, 1099
RruI	TCGCGA	1 cut(s)	1198
RsaI	GTAC	2 cut(s)	224, 1001
RsaNI	GTAC	2 cut(s)	223, 1000
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	77, 404, 680, 909
SatI	GCNGC	2 cut(s)	6, 39
Sau3AI	GATC	8 cut(s)	84, 90, 715, 877, 947, 979, 1099, 1138
Sau96I	GGNCC	3 cut(s)	144, 620, 991
SchI	GAGTC	2 cut(s)	1076, 1202
ScrFI	CCNGG	3 cut(s)	64, 468, 573
SduI	GDGCHC	4 cut(s)	180, 187, 398, 1066
SetI	ASST	5 cut(s)	142, 561, 625, 932, 939
SfaNI	GCATC	4 cut(s)	529, 557, 618, 835
SfcI	CTRYAG	2 cut(s)	153, 171
SinI	GGWCC	3 cut(s)	144, 620, 991
SmiMI	CAYNNNNRTG	1 cut(s)	537
SpeI	ACTAGT	1 cut(s)	1069
Sse9I	AATT	7 cut(s)	102, 125, 190, 522, 797, 855, 1020
SseBI	AGGCCT	2 cut(s)	50, 169
SsiI	CCGC	5 cut(s)	5, 30, 293, 447, 478
SspI	AATATT	1 cut(s)	1145
SspMI	CTAG	1 cut(s)	1070
StuI	AGGCCT	2 cut(s)	50, 169
StyD4I	CCNGG	3 cut(s)	62, 466, 571
StyI	CCWWGG	4 cut(s)	331, 438, 849, 881
TaaI	ACNGT	5 cut(s)	16, 175, 222, 499, 829
TaqI	TCGA	2 cut(s)	684, 1074
TasI	AATT	7 cut(s)	102, 125, 190, 522, 797, 855, 1020
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	4 cut(s)	77, 404, 680, 909
Tru9I	TTAA	4 cut(s)	77, 404, 680, 909
TscAI	CASTG	6 cut(s)	75, 180, 187, 280, 715, 989
TseFI	GTSAC	3 cut(s)	575, 706, 1040
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	3 cut(s)	575, 706, 1040
TspDTI	ATGAA	2 cut(s)	822, 1198
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	6 cut(s)	75, 180, 187, 280, 715, 989
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	3 cut(s)	144, 620, 991
VspI	ATTAAT	1 cut(s)	680
XapI	RAATTY	1 cut(s)	1020
XceI	RCATGY	2 cut(s)	402, 416
XcmI	CCANNNNNNNNNTGG	2 cut(s)	539, 1132
XspI	CTAG	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.