Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004184

Physical Location & Seq

Genomic Coordinates Reverse (-)

9939074 .. 9945366

Gene Structure 6293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10610.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATGCAGAGGCTCAGACACGGCGGCCTTGACAGTTGTCGTTTCCTCAGCCATTGCAGCAGAAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCTCTAATCGATGATCTTGATCACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGGCCTTCAGTGCTCAATTCTCTCACTACTGCAATGGGGCTTAGATTGCAGAAGCTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGTTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTATATCATTTGATAAATCAAGGGAGAATGGACGATTGTAAGGAGTTTTTTCGGGCATTATATCCTTTTATATATCTCCTCGGCACATGTTTAAAGCCACATGTGGCTATCTTGAATGGTGTTACCATGGGTGGTGGTGCTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACGGTCTTTGCTACCCCTGAAACTTTAATTGGTTTCCATCCAGACGCTGGGGCATCCTTTTACCTTTCACATCTACCAGGTCACGTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAGCTCAATGGACCTGAGATGGTTGCTTGTGGGCTTGCAACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGATCTTGGAAAGTTAGTTACTGATGATCCGTCTGTCATTGAAGCTTGTTTTGACAAATATGGGGAACTTGTCCAACCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGATACAGTTGAAGAGATTATAGATGCCTTGGAAAGGGAGGCAGGCAGAACAAAGGACCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGACGTCTCGCCGTTGAGCTTAAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATATCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCCTACAGGGGAGTTATAAGCAGATCAGTGGTGACTTTTGTGAGGGGGTTCGGGCGAGACTAGTCGAAAAGGACTCAGCACCAAAGGTGGGTAGACTCCAAAGTCACATGAGAAGCATTTGCCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

7.18

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	7 - 253	1.1e-86	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	9 - 88	3.8e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60510 AT3G60510 AT3G60510
fragaria_vesca	FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610 FvH4_7g10610
malus_domestica	MD07G1111300.v1.1
prunus_persica	Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1 Prupe.2G134700_v2.0.a1
pyrus_communis	pycom07g09610
rosa_chinensis	RchiOBHm_Chr1g0348451 RchiOBHm_Chr1g0348531
rosa_laevigata	RLG00000028641 RLG00000028649 RLG00000028657
rosa_multiflora	Rmu_sc0000091.1_g000013
rosa_roxburghii	Rroxscaffold_4G00306970
rosa_rugosa	Rorug01G0194700 Rorug01G0194800
rosa_samantha	Rh1AG212800 Rh1BG179200 Rh1CG197100 Rh1DG208900 Rh1DG209300
rosa_wichuraiana	Rw1G018010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1026
AasI	GACNNNNNNGTC	1 cut(s)	1110
AatII	GACGTC	1 cut(s)	918
AccB7I	CCANNNNNTGG	2 cut(s)	124, 542
AccI	GTMKAC	1 cut(s)	1102
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	3 cut(s)	24, 293, 478
AclWI	GGATC	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	915
AfaI	GTAC	2 cut(s)	224, 1001
AfiI	CCNNNNNNNGG	6 cut(s)	124, 251, 542, 855, 1017, 1097
AflIII	ACRYGT	2 cut(s)	398, 412
AgsI	TTSAA	7 cut(s)	131, 268, 427, 669, 731, 797, 833
AhlI	ACTAGT	1 cut(s)	1069
AjnI	CCWGG	2 cut(s)	466, 571
AjuI	GAANNNNNNNTTGG	4 cut(s)	507, 539, 678, 710
AluBI	AGCT	5 cut(s)	140, 220, 613, 734, 930
AluI	AGCT	5 cut(s)	140, 220, 613, 734, 930
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	5 cut(s)	315, 463, 898, 922, 1060
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	2 cut(s)	220, 542
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	3 cut(s)	25, 70, 167
ApeKI	GCWGC	1 cut(s)	57
AseI	ATTAAT	1 cut(s)	680
AspS9I	GGNCC	4 cut(s)	144, 620, 877, 991
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	107, 1052
AvaII	GGWCC	4 cut(s)	144, 620, 877, 991
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	540, 622
BceAI	ACGGC	2 cut(s)	37, 907
BciT130I	CCWGG	2 cut(s)	468, 573
BclI	TGATCA	2 cut(s)	112, 979
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	5 cut(s)	315, 463, 898, 922, 1060
BcuI	ACTAGT	1 cut(s)	1069
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	2 cut(s)	153, 1013
BglII	AGATCT	2 cut(s)	691, 947
BisI	GCNGC	2 cut(s)	25, 58
BlsI	GCNGC	2 cut(s)	26, 59
Bme1390I	CCNGG	3 cut(s)	86, 468, 573
Bme18I	GGWCC	4 cut(s)	144, 620, 877, 991
BmgT120I	GGNCC	4 cut(s)	144, 620, 877, 991
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	3 cut(s)	86, 468, 573
BmsI	GCATC	2 cut(s)	557, 835
BoxI	GACNNNNGTC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	915
BsaJI	CCNNGG	5 cut(s)	391, 438, 466, 849, 881
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	6 cut(s)	124, 251, 542, 855, 1017, 1097
Bse3DI	GCAATG	3 cut(s)	52, 204, 480
Bse8I	GATNNNNATC	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	468, 573
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	5 cut(s)	391, 438, 466, 849, 881
BseGI	GGATG	3 cut(s)	253, 532, 548
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	6 cut(s)	124, 251, 542, 855, 1017, 1097
BseMI	GCAATG	3 cut(s)	52, 204, 480
BseMII	CTCAG	4 cut(s)	28, 61, 615, 1098
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	3 cut(s)	27, 72, 169
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	86, 245
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	6 cut(s)	124, 251, 542, 855, 1017, 1097
BsmAI	GTCTC	5 cut(s)	315, 463, 898, 922, 1060
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	27, 72, 169
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
Bsp19I	CCATGG	2 cut(s)	438, 881
BspACI	CCGC	3 cut(s)	24, 293, 478
BspANI	GGCC	3 cut(s)	27, 72, 169
BspCNI	CTCAG	4 cut(s)	27, 60, 616, 1097
BspDI	ATCGAT	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	879
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	1 cut(s)	710
BsrDI	GCAATG	3 cut(s)	52, 204, 480
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	5 cut(s)	391, 438, 466, 849, 881
BssMI	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	3 cut(s)	438, 849, 881
Bst2UI	CCWGG	2 cut(s)	468, 573
Bst4CI	ACNGT	3 cut(s)	35, 499, 829
Bst6I	CTCTTC	2 cut(s)	61, 828
BstACI	GRCGYC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	645, 865
BstDEI	CTNAG	6 cut(s)	14, 47, 206, 624, 944, 1084
BstDSI	CCRYGG	2 cut(s)	438, 881
BstENI	CCTNNNNNAGG	1 cut(s)	853
BstF5I	GGATG	3 cut(s)	253, 532, 548
BstKTI	GATC	7 cut(s)	109, 115, 694, 718, 950, 982, 1035
BstMAI	GTCTC	5 cut(s)	315, 463, 898, 922, 1060
BstMBI	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 175, 211, 290
BstNI	CCWGG	2 cut(s)	468, 573
BstNSI	RCATGY	2 cut(s)	402, 416
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSCI	CCNGG	3 cut(s)	84, 466, 571
BstSFI	CTRYAG	2 cut(s)	153, 1013
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	691, 947
BstYI	RGATCY	2 cut(s)	691, 947
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	27, 72, 169
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	438, 881
BtsCI	GGATG	3 cut(s)	253, 532, 548
BtsI	GCAGTG	2 cut(s)	90, 280
BtsIMutI	CAGTG	5 cut(s)	90, 180, 280, 989, 1042
Cac8I	GCNNGC	2 cut(s)	645, 865
CaiI	CAGNNNCTG	2 cut(s)	220, 542
Cfr13I	GGNCC	4 cut(s)	144, 620, 877, 991
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	223, 1000
CviAII	CATG	6 cut(s)	399, 413, 439, 821, 882, 1117
CviQI	GTAC	2 cut(s)	223, 1000
DdeI	CTNAG	6 cut(s)	14, 47, 206, 624, 944, 1084
DpnI	GATC	7 cut(s)	108, 114, 693, 717, 949, 981, 1034
DpnII	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
DraI	TTTAAA	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	1110
DseDI	GACNNNNNNGTC	1 cut(s)	1110
Eam1104I	CTCTTC	2 cut(s)	61, 828
EarI	CTCTTC	2 cut(s)	61, 828
Eco130I	CCWWGG	3 cut(s)	438, 849, 881
Eco147I	AGGCCT	2 cut(s)	72, 169
Eco32I	GATATC	1 cut(s)	968
Eco47I	GGWCC	4 cut(s)	144, 620, 877, 991
Eco57I	CTGAAG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	853
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRII	CCWGG	2 cut(s)	466, 571
EcoRV	GATATC	1 cut(s)	968
EcoT14I	CCWWGG	3 cut(s)	438, 849, 881
ErhI	CCWWGG	3 cut(s)	438, 849, 881
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	6 cut(s)	402, 416, 442, 824, 885, 1120
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	6 cut(s)	398, 412, 438, 820, 881, 1116
FauI	CCCGC	1 cut(s)	286
FbaI	TGATCA	2 cut(s)	112, 979
FblI	GTMKAC	1 cut(s)	1102
Fnu4HI	GCNGC	2 cut(s)	25, 58
FokI	GGATG	3 cut(s)	260, 519, 535
Fsp4HI	GCNGC	2 cut(s)	25, 58
FspBI	CTAG	1 cut(s)	1070
GluI	GCNGC	2 cut(s)	25, 58
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	27, 72, 169
HapII	CCGG	2 cut(s)	86, 245
HgaI	GACGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	6 cut(s)	402, 416, 442, 824, 885, 1120
HindIII	AAGCTT	2 cut(s)	138, 732
HinfI	GANTC	3 cut(s)	673, 1082, 1104
HpaII	CCGG	2 cut(s)	86, 245
HphI	GGTGA	2 cut(s)	107, 1052
Hpy166II	GTNNAC	1 cut(s)	1103
Hpy188I	TCNGA	2 cut(s)	17, 972
Hpy188III	TCNNGA	5 cut(s)	110, 147, 245, 424, 536
Hpy8I	GTNNAC	1 cut(s)	1103
HpyAV	CCTTC	4 cut(s)	125, 180, 262, 953
HpyCH4III	ACNGT	3 cut(s)	35, 499, 829
HpyCH4IV	ACGT	2 cut(s)	579, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 175, 211, 290
HpyF3I	CTNAG	6 cut(s)	14, 47, 206, 624, 944, 1084
HpySE526I	ACGT	2 cut(s)	579, 915
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	6 cut(s)	402, 416, 442, 824, 885, 1120
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	2 cut(s)	112, 979
Kzo9I	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	2 cut(s)	557, 835
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	1 cut(s)	1070
MaeII	ACGT	2 cut(s)	579, 915
MaeIII	GTNAC	5 cut(s)	433, 575, 706, 1040, 1112
MalI	GATC	7 cut(s)	108, 114, 693, 717, 949, 981, 1034
MboI	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
MboII	GAAGA	7 cut(s)	75, 78, 248, 698, 701, 845, 975
MflI	RGATCY	2 cut(s)	691, 947
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	181, 522, 797
MlyI	GAGTC	2 cut(s)	1076, 1098
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	7 cut(s)	3, 56, 62, 83, 401, 853, 1045
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	5 cut(s)	404, 521, 680, 909, 932
MspI	CCGG	2 cut(s)	86, 245
MspR9I	CCNGG	3 cut(s)	86, 468, 573
MvaI	CCWGG	2 cut(s)	468, 573
MwoI	GCNNNNNNNGC	4 cut(s)	57, 175, 211, 290
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	438, 881
NdeII	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
NlaIII	CATG	6 cut(s)	402, 416, 442, 824, 885, 1120
NlaIV	GGNNCC	1 cut(s)	879
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	3 cut(s)	575, 1040, 1112
NspI	RCATGY	2 cut(s)	402, 416
PceI	AGGCCT	2 cut(s)	72, 169
PciI	ACATGT	2 cut(s)	398, 412
PfeI	GAWTC	1 cut(s)	673
PflMI	CCANNNNNTGG	2 cut(s)	124, 542
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	26, 59
PleI	GAGTC	2 cut(s)	1076, 1098
PpsI	GAGTC	2 cut(s)	1076, 1098
Ppu21I	YACGTR	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	877
PscI	ACATGT	2 cut(s)	398, 412
PshAI	GACNNNNGTC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	680
PsiI	TTATAA	1 cut(s)	1026
Psp5II	RGGWCCY	1 cut(s)	877
Psp6I	CCWGG	2 cut(s)	466, 571
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	466, 571
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	4 cut(s)	144, 620, 877, 991
PspPPI	RGGWCCY	1 cut(s)	877
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	2 cut(s)	220, 542
PsuI	RGATCY	2 cut(s)	691, 947
RsaI	GTAC	2 cut(s)	224, 1001
RsaNI	GTAC	2 cut(s)	223, 1000
SaqAI	TTAA	5 cut(s)	404, 521, 680, 909, 932
SatI	GCNGC	2 cut(s)	25, 58
Sau3AI	GATC	7 cut(s)	106, 112, 691, 715, 947, 979, 1032
Sau96I	GGNCC	4 cut(s)	144, 620, 877, 991
SchI	GAGTC	2 cut(s)	1076, 1098
ScrFI	CCNGG	3 cut(s)	86, 468, 573
SduI	GDGCHC	1 cut(s)	180
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	557, 835
SfcI	CTRYAG	2 cut(s)	153, 1013
SinI	GGWCC	4 cut(s)	144, 620, 877, 991
SpeI	ACTAGT	1 cut(s)	1069
Sse9I	AATT	3 cut(s)	181, 522, 797
SseBI	AGGCCT	2 cut(s)	72, 169
SsiI	CCGC	3 cut(s)	24, 293, 478
SspMI	CTAG	1 cut(s)	1070
StuI	AGGCCT	2 cut(s)	72, 169
StyD4I	CCNGG	3 cut(s)	84, 466, 571
StyI	CCWWGG	3 cut(s)	438, 849, 881
TaaI	ACNGT	3 cut(s)	35, 499, 829
TaiI	ACGT	2 cut(s)	582, 918
TaqI	TCGA	3 cut(s)	102, 684, 1074
TasI	AATT	3 cut(s)	181, 522, 797
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	5 cut(s)	404, 521, 680, 909, 932
Tru9I	TTAA	5 cut(s)	404, 521, 680, 909, 932
TscAI	CASTG	5 cut(s)	97, 180, 280, 989, 1042
TseFI	GTSAC	3 cut(s)	575, 1040, 1112
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	3 cut(s)	575, 1040, 1112
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	2 cut(s)	708, 983
TspRI	CASTG	5 cut(s)	97, 180, 280, 989, 1042
Van91I	CCANNNNNTGG	2 cut(s)	124, 542
VpaK11BI	GGWCC	4 cut(s)	144, 620, 877, 991
VspI	ATTAAT	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	853
XceI	RCATGY	2 cut(s)	402, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	1102
XspI	CTAG	1 cut(s)	1070
ZraI	GACGTC	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.