RLG00000028657

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
25719295 .. 25725206
5912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028657

Sequence Viewer

Length: 1230 bp
ATGATGCAGAGGCTCAAGGCAGCTGTATTGGCCAGACGCGGCGGCCTTGACAGTTGTCGTTTCCTCAGCCATTGCCGCAGAAGAGGCCTCTGCTCTCTCCCAGACACTGCCCTCAACGATGATCTTGATAACCAAGTGTTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCAGTCCTCAATGCTCTCACTACTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACCAAGGGAGAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTATATCCTTTTATATATCTCCTGGGCACATGTTTAAAGCCACATGTGACTATCTTGAATGGCGTTACCATGGGTGGTGGTGGTGGTGTTTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTTTTCGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCAGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACTTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCGGCCATGACACAGTTGAAGAGATTATAGATGCCATGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGAATTTCTAAGCAGATTACTGGTGACTTCTGTGAGGGGGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCAAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTCGAGCCTGACTTAGAACTACCAACAGAGTCGCGAGAAGCATTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

45.43

Weight (kDa)

5.79

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 55 - 388 1e-116 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 59 - 222 1.1e-20 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 557
AccII CGCG 2 cut(s) 39, 1213
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 5 cut(s) 39, 42, 76, 308, 493
AclWI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
AcoI YGGCCR 2 cut(s) 30, 832
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 239, 1016
AfiI CCNNNNNNNGG 5 cut(s) 139, 266, 557, 1110, 1111
AflIII ACRYGT 2 cut(s) 413, 427
AhdI GACNNNNNGTC 1 cut(s) 188
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 3 cut(s) 405, 481, 586
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 693, 725
AloI GAACNNNNNNTCC 2 cut(s) 877, 909
AluBI AGCT 3 cut(s) 23, 155, 945
AluI AGCT 3 cut(s) 23, 155, 945
Alw26I GTCTC 3 cut(s) 330, 913, 937
AlwI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
AlwNI CAGNNNCTG 3 cut(s) 107, 235, 557
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 4 cut(s) 30, 43, 85, 832
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 1035
AseI ATTAAT 1 cut(s) 695
AspS9I GGNCC 3 cut(s) 159, 635, 1006
AsuHPI GGTGA 1 cut(s) 1067
AvaII GGWCC 3 cut(s) 159, 635, 1006
BaeGI GKGCMC 2 cut(s) 413, 1081
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 2 cut(s) 892, 1114
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 555, 786
BciT130I CCWGG 3 cut(s) 407, 483, 588
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 3 cut(s) 330, 913, 937
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 1 cut(s) 1085
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 962
BisI GCNGC 4 cut(s) 21, 40, 43, 76
BlsI GCNGC 4 cut(s) 22, 41, 44, 77
Bme1390I CCNGG 3 cut(s) 407, 483, 588
Bme18I GGWCC 3 cut(s) 159, 635, 1006
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 159, 635, 1006
BmiI GGNNCC 2 cut(s) 894, 1116
BmrFI CCNGG 3 cut(s) 407, 483, 588
BmsI GCATC 4 cut(s) 544, 572, 633, 850
BoxI GACNNNNGTC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 65
BsaJI CCNNGG 6 cut(s) 346, 406, 453, 481, 864, 896
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 266, 557, 1110, 1111
Bse1I ACTGG 1 cut(s) 1057
Bse3DI GCAATG 3 cut(s) 70, 219, 495
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 3 cut(s) 407, 483, 588
BseDI CCNNGG 6 cut(s) 346, 406, 453, 481, 864, 896
BseGI GGATG 4 cut(s) 268, 547, 563, 778
BseLI CCNNNNNNNGG 5 cut(s) 139, 266, 557, 1110, 1111
BseMI GCAATG 3 cut(s) 70, 219, 495
BseMII CTCAG 3 cut(s) 79, 630, 1113
BseNI ACTGG 1 cut(s) 1057
BseSI GKGCMC 2 cut(s) 413, 1081
BseXI GCAGC 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 39, 1213
BshFI GGCC 4 cut(s) 32, 45, 87, 834
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 1151
BslI CCNNNNNNNGG 5 cut(s) 139, 266, 557, 1110, 1111
BsmAI GTCTC 3 cut(s) 330, 913, 937
BsmFI GGGAC 1 cut(s) 1151
BsmI GAATGC 1 cut(s) 1220
BsnI GGCC 4 cut(s) 32, 45, 87, 834
Bsp1286I GDGCHC 2 cut(s) 413, 1081
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Bsp19I CCATGG 3 cut(s) 453, 864, 896
Bsp68I TCGCGA 1 cut(s) 1213
BspACI CCGC 5 cut(s) 39, 42, 76, 308, 493
BspANI GGCC 4 cut(s) 32, 45, 87, 834
BspCNI CTCAG 3 cut(s) 78, 631, 1112
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 39, 1213
BspLI GGNNCC 2 cut(s) 894, 1116
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
BsrDI GCAATG 3 cut(s) 70, 219, 495
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 1057
BssECI CCNNGG 6 cut(s) 346, 406, 453, 481, 864, 896
BssMI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
BssT1I CCWWGG 4 cut(s) 346, 453, 864, 896
Bst2UI CCWGG 3 cut(s) 407, 483, 588
Bst4CI ACNGT 4 cut(s) 53, 237, 514, 844
Bst6I CTCTTC 2 cut(s) 76, 843
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 648, 660, 880
BstDEI CTNAG 9 cut(s) 65, 221, 595, 639, 959, 1041, 1099, 1172, 1192
BstDSI CCRYGG 3 cut(s) 453, 864, 896
BstF5I GGATG 4 cut(s) 268, 547, 563, 778
BstFNI CGCG 2 cut(s) 39, 1213
BstKTI GATC 7 cut(s) 124, 733, 895, 965, 997, 1117, 1156
BstMAI GTCTC 3 cut(s) 330, 913, 937
BstMBI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 29, 75, 84, 226, 305
BstNI CCWGG 3 cut(s) 407, 483, 588
BstNSI RCATGY 2 cut(s) 417, 431
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 405, 481, 586
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 413, 1081
BstUI CGCG 2 cut(s) 39, 1213
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 3 cut(s) 892, 962, 1114
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 3 cut(s) 892, 962, 1114
BsuRI GGCC 4 cut(s) 32, 45, 87, 834
BtgI CCRYGG 3 cut(s) 453, 864, 896
BtsCI GGATG 4 cut(s) 268, 547, 563, 778
BtsI GCAGTG 2 cut(s) 105, 295
BtsIMutI CAGTG 4 cut(s) 105, 295, 723, 1004
BtuMI TCGCGA 1 cut(s) 1213
Cac8I GCNNGC 3 cut(s) 648, 660, 880
CaiI CAGNNNCTG 3 cut(s) 107, 235, 557
Cfr13I GGNCC 3 cut(s) 159, 635, 1006
CseI GACGC 1 cut(s) 45
CsiI ACCWGGT 1 cut(s) 586
Csp6I GTAC 2 cut(s) 238, 1015
CviAII CATG 8 cut(s) 414, 428, 454, 764, 836, 865, 897, 1147
CviQI GTAC 2 cut(s) 238, 1015
DdeI CTNAG 9 cut(s) 65, 221, 595, 639, 959, 1041, 1099, 1172, 1192
DpnI GATC 7 cut(s) 123, 732, 894, 964, 996, 1116, 1155
DpnII GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
DraI TTTAAA 1 cut(s) 420
DriI GACNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 2 cut(s) 30, 832
Eam1104I CTCTTC 2 cut(s) 76, 843
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 2 cut(s) 76, 843
Eco130I CCWWGG 4 cut(s) 346, 453, 864, 896
Eco147I AGGCCT 1 cut(s) 87
Eco47I GGWCC 3 cut(s) 159, 635, 1006
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 405, 481, 586
EcoT14I CCWWGG 4 cut(s) 346, 453, 864, 896
ErhI CCWWGG 4 cut(s) 346, 453, 864, 896
FaeI CATG 8 cut(s) 417, 431, 457, 767, 839, 868, 900, 1150
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FaqI GGGAC 1 cut(s) 1151
FatI CATG 8 cut(s) 413, 427, 453, 763, 835, 864, 896, 1146
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 4 cut(s) 21, 40, 43, 76
FokI GGATG 4 cut(s) 275, 534, 550, 765
Fsp4HI GCNGC 4 cut(s) 21, 40, 43, 76
FspBI CTAG 1 cut(s) 1085
GluI GCNGC 4 cut(s) 21, 40, 43, 76
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 4 cut(s) 32, 45, 87, 834
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 45
Hin1II CATG 8 cut(s) 417, 431, 457, 767, 839, 868, 900, 1150
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 3 cut(s) 688, 1097, 1208
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 1067
Hpy188I TCNGA 2 cut(s) 987, 1229
Hpy188III TCNNGA 7 cut(s) 125, 162, 260, 439, 551, 782, 1212
HpyAV CCTTC 6 cut(s) 140, 195, 277, 744, 943, 968
HpyCH4III ACNGT 4 cut(s) 53, 237, 514, 844
HpyCH4V TGCA 8 cut(s) 7, 170, 212, 229, 278, 500, 676, 903
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 75, 84, 226, 305
HpyF3I CTNAG 9 cut(s) 65, 221, 595, 639, 959, 1041, 1099, 1172, 1192
Hsp92II CATG 8 cut(s) 417, 431, 457, 767, 839, 868, 900, 1150
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 4 cut(s) 544, 572, 633, 850
MabI ACCWGGT 1 cut(s) 586
MaeI CTAG 1 cut(s) 1085
MaeIII GTNAC 6 cut(s) 430, 448, 590, 721, 1055, 1135
MalI GATC 7 cut(s) 123, 732, 894, 964, 996, 1116, 1155
MboI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
MboII GAAGA 7 cut(s) 93, 263, 371, 713, 716, 860, 990
MflI RGATCY 3 cut(s) 892, 962, 1114
MhlI GDGCHC 2 cut(s) 413, 1081
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 4 cut(s) 537, 812, 870, 1035
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 2 cut(s) 1091, 1217
Mox20I TGGCCA 1 cut(s) 32
MroI TCCGGA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 32
MseI TTAA 3 cut(s) 419, 695, 924
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 3 cut(s) 407, 483, 588
Mva1269I GAATGC 1 cut(s) 1220
MvaI CCWGG 3 cut(s) 407, 483, 588
MvnI CGCG 2 cut(s) 39, 1213
MwoI GCNNNNNNNGC 5 cut(s) 29, 75, 84, 226, 305
NcoI CCATGG 3 cut(s) 453, 864, 896
NdeII GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
NlaIII CATG 8 cut(s) 417, 431, 457, 767, 839, 868, 900, 1150
NlaIV GGNNCC 2 cut(s) 894, 1116
NmuCI GTSAC 4 cut(s) 430, 590, 721, 1055
NruI TCGCGA 1 cut(s) 1213
NspI RCATGY 2 cut(s) 417, 431
PceI AGGCCT 1 cut(s) 87
PciI ACATGT 2 cut(s) 413, 427
PctI GAATGC 1 cut(s) 1220
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 2 cut(s) 139, 557
PkrI GCNGC 4 cut(s) 22, 41, 44, 77
PleI GAGTC 2 cut(s) 1091, 1216
PpsI GAGTC 2 cut(s) 1091, 1216
PscI ACATGT 2 cut(s) 413, 427
PshAI GACNNNNGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 695
Psp6I CCWGG 3 cut(s) 405, 481, 586
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 3 cut(s) 405, 481, 586
PspN4I GGNNCC 2 cut(s) 894, 1116
PspPI GGNCC 3 cut(s) 159, 635, 1006
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 3 cut(s) 107, 235, 557
PsuI RGATCY 3 cut(s) 892, 962, 1114
PvuII CAGCTG 1 cut(s) 23
RruI TCGCGA 1 cut(s) 1213
RsaI GTAC 2 cut(s) 239, 1016
RsaNI GTAC 2 cut(s) 238, 1015
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 3 cut(s) 419, 695, 924
SatI GCNGC 4 cut(s) 21, 40, 43, 76
Sau3AI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Sau96I GGNCC 3 cut(s) 159, 635, 1006
SchI GAGTC 2 cut(s) 1091, 1217
ScrFI CCNGG 3 cut(s) 407, 483, 588
SduI GDGCHC 2 cut(s) 413, 1081
SetI ASST 8 cut(s) 25, 157, 187, 576, 592, 640, 947, 954
SexAI ACCWGGT 1 cut(s) 586
SfaNI GCATC 4 cut(s) 544, 572, 633, 850
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 3 cut(s) 159, 635, 1006
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 1084
Sse9I AATT 4 cut(s) 537, 812, 870, 1035
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 5 cut(s) 39, 42, 76, 308, 493
SspI AATATT 1 cut(s) 1160
SspMI CTAG 1 cut(s) 1085
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 405, 481, 586
StyI CCWWGG 4 cut(s) 346, 453, 864, 896
TaaI ACNGT 4 cut(s) 53, 237, 514, 844
TaqI TCGA 3 cut(s) 699, 1089, 1182
TasI AATT 4 cut(s) 537, 812, 870, 1035
TatI WGTACW 1 cut(s) 237
TauI GCSGC 3 cut(s) 42, 45, 78
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 3 cut(s) 419, 695, 924
Tru9I TTAA 3 cut(s) 419, 695, 924
TscAI CASTG 4 cut(s) 112, 295, 730, 1004
TseFI GTSAC 4 cut(s) 430, 590, 721, 1055
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 4 cut(s) 430, 590, 721, 1055
TspDTI ATGAA 2 cut(s) 837, 1213
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 4 cut(s) 112, 295, 730, 1004
Van91I CCANNNNNTGG 2 cut(s) 139, 557
VpaK11BI GGWCC 3 cut(s) 159, 635, 1006
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 2 cut(s) 417, 431
XcmI CCANNNNNNNNNTGG 2 cut(s) 554, 1147
XspI CTAG 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.