cho,emb133,tfc d,ttn1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G60740 AT3G60740 AT3G60740 |
| fragaria_vesca | FvH4_7g07690 |
| malus_domestica | MD02G1313300.v1.1 MD07G1008800.v1.1 |
| prunus_persica | Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 |
| pyrus_communis | pycom07g00760 |
| rosa_chinensis | RchiOBHm_Chr1g0342581 |
| rosa_laevigata | RLG00000029165 RLG00000029175 |
| rosa_multiflora | Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00313120 |
| rosa_rugosa | Rorug01G0147200.1 Rorug01G0148800.1 |
| rosa_samantha | Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500 |
| rosa_wichuraiana | Rw1G013760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2757 |
| Acc16I | TGCGCA | 1 cut(s) | 698 |
| Acc65I | GGTACC | 1 cut(s) | 3229 |
| AccB1I | GGYRCC | 2 cut(s) | 1099, 3229 |
| AccBSI | CCGCTC | 1 cut(s) | 297 |
| AccI | GTMKAC | 4 cut(s) | 1076, 3238, 3293, 3747 |
| AccII | CGCG | 3 cut(s) | 944, 1539, 3311 |
| AccIII | TCCGGA | 1 cut(s) | 739 |
| AclWI | GGATC | 9 cut(s) | 179, 199, 204, 1498, 1581, 2195, 2552, 3247, 3469 |
| AcoI | YGGCCR | 2 cut(s) | 172, 3457 |
| AcsI | RAATTY | 4 cut(s) | 333, 478, 2212, 2940 |
| AcuI | CTGAAG | 6 cut(s) | 1736, 2493, 2622, 2840, 3244, 3387 |
| AcvI | CACGTG | 1 cut(s) | 2495 |
| AcyI | GRCGYC | 1 cut(s) | 1100 |
| AdeI | CACNNNGTG | 2 cut(s) | 1484, 2387 |
| AfaI | GTAC | 8 cut(s) | 395, 475, 1889, 1939, 2710, 2916, 3206, 3231 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 562, 746, 1343, 3484 |
| AflIII | ACRYGT | 1 cut(s) | 2494 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2123 |
| AhlI | ACTAGT | 1 cut(s) | 1426 |
| AjiI | CACGTC | 1 cut(s) | 1280 |
| AjnI | CCWGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| AleI | CACNNNNGTG | 2 cut(s) | 2013, 2522 |
| Alw26I | GTCTC | 4 cut(s) | 2131, 2525, 2583, 3412 |
| AlwI | GGATC | 9 cut(s) | 179, 199, 204, 1498, 1581, 2195, 2552, 3247, 3469 |
| Ama87I | CYCGRG | 2 cut(s) | 458, 1734 |
| Aor13HI | TCCGGA | 1 cut(s) | 739 |
| AoxI | GGCC | 6 cut(s) | 172, 318, 522, 1374, 3376, 3457 |
| ApoI | RAATTY | 4 cut(s) | 333, 478, 2212, 2940 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 599, 631 |
| AscI | GGCGCGCC | 1 cut(s) | 1537 |
| AseI | ATTAAT | 1 cut(s) | 281 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 2368, 2940, 2943, 3091 |
| Asp718I | GGTACC | 1 cut(s) | 3229 |
| AspLEI | GCGC | 7 cut(s) | 699, 1038, 1102, 1539, 1541, 1965, 3511 |
| AspS9I | GGNCC | 3 cut(s) | 689, 1475, 2344 |
| AsuII | TTCGAA | 1 cut(s) | 2786 |
| AsuNHI | GCTAGC | 2 cut(s) | 872, 2552 |
| AvaI | CYCGRG | 2 cut(s) | 458, 1734 |
| AvaII | GGWCC | 3 cut(s) | 689, 1475, 2344 |
| BalI | TGGCCA | 1 cut(s) | 3459 |
| BanI | GGYRCC | 2 cut(s) | 1099, 3229 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2050, 2082 |
| BbrPI | CACGTG | 1 cut(s) | 2495 |
| BbsI | GAAGAC | 4 cut(s) | 81, 1004, 1675, 2481 |
| BccI | CCATC | 5 cut(s) | 1130, 1343, 2602, 3341, 3541 |
| BceAI | ACGGC | 3 cut(s) | 66, 159, 431 |
| BciT130I | CCWGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| BciVI | GTATCC | 3 cut(s) | 439, 2605, 3186 |
| BclI | TGATCA | 3 cut(s) | 978, 1105, 1147 |
| BcoDI | GTCTC | 4 cut(s) | 2131, 2525, 2583, 3412 |
| BcuI | ACTAGT | 1 cut(s) | 1426 |
| BfaI | CTAG | 8 cut(s) | 9, 873, 890, 1413, 1427, 2384, 2553, 3329 |
| BfmI | CTRYAG | 6 cut(s) | 107, 1627, 1860, 2443, 2685, 3239 |
| BfoI | RGCGCY | 2 cut(s) | 1039, 1103 |
| BfuI | GTATCC | 3 cut(s) | 439, 2605, 3186 |
| BglII | AGATCT | 2 cut(s) | 1824, 3270 |
| BlpI | GCTNAGC | 1 cut(s) | 929 |
| Bme1390I | CCNGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| Bme18I | GGWCC | 3 cut(s) | 689, 1475, 2344 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2123 |
| BmeT110I | CYCGRG | 2 cut(s) | 458, 1734 |
| BmgBI | CACGTC | 1 cut(s) | 1280 |
| BmgT120I | GGNCC | 3 cut(s) | 689, 1475, 2344 |
| BmiI | GGNNCC | 7 cut(s) | 252, 567, 1101, 1606, 2346, 2976, 3231 |
| BmrFI | CCNGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| BmrI | ACTGGG | 2 cut(s) | 1430, 1843 |
| BmsI | GCATC | 5 cut(s) | 14, 369, 430, 1495, 2473 |
| BmtI | GCTAGC | 2 cut(s) | 876, 2556 |
| BmuI | ACTGGG | 2 cut(s) | 1430, 1843 |
| BpiI | GAAGAC | 4 cut(s) | 81, 1004, 1675, 2481 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1072, 1104 |
| BpmI | CTGGAG | 4 cut(s) | 531, 1569, 1940, 2007 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1378, 1896 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 929 |
| Bpu14I | TTCGAA | 1 cut(s) | 2786 |
| BpuEI | CTTGAG | 4 cut(s) | 359, 514, 1867, 2720 |
| BsaAI | YACGTR | 1 cut(s) | 2495 |
| BsaBI | GATNNNNATC | 2 cut(s) | 41, 2787 |
| BsaHI | GRCGYC | 1 cut(s) | 1100 |
| BsaWI | WCCGGW | 1 cut(s) | 739 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1980, 2010 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 562, 746, 1343, 3484 |
| Bse1I | ACTGG | 7 cut(s) | 514, 1392, 1436, 1838, 2011, 2124, 2937 |
| Bse3DI | GCAATG | 3 cut(s) | 597, 1767, 2299 |
| Bse8I | GATNNNNATC | 2 cut(s) | 41, 2787 |
| BseAI | TCCGGA | 1 cut(s) | 739 |
| BseBI | CCWGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| BseGI | GGATG | 8 cut(s) | 291, 631, 1150, 1162, 1174, 1810, 2221, 2519 |
| BseJI | GATNNNNATC | 2 cut(s) | 41, 2787 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 562, 746, 1343, 3484 |
| BseMI | GCAATG | 3 cut(s) | 597, 1767, 2299 |
| BseMII | CTCAG | 5 cut(s) | 1004, 1056, 2199, 2555, 3626 |
| BseNI | ACTGG | 7 cut(s) | 514, 1392, 1436, 1838, 2011, 2124, 2937 |
| BsePI | GCGCGC | 1 cut(s) | 1537 |
| BseRI | GAGGAG | 4 cut(s) | 446, 1866, 3554, 3742 |
| BsgI | GTGCAG | 4 cut(s) | 700, 1991, 2358, 3023 |
| Bsh1236I | CGCG | 3 cut(s) | 944, 1539, 3311 |
| BshFI | GGCC | 6 cut(s) | 174, 320, 524, 1376, 3378, 3459 |
| BshNI | GGYRCC | 2 cut(s) | 1099, 3229 |
| BsiHKCI | CYCGRG | 2 cut(s) | 458, 1734 |
| BsiSI | CCGG | 4 cut(s) | 740, 877, 2978, 3699 |
| BslFI | GGGAC | 3 cut(s) | 1235, 1418, 2891 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 562, 746, 1343, 3484 |
| BsmAI | GTCTC | 4 cut(s) | 2131, 2525, 2583, 3412 |
| BsmFI | GGGAC | 3 cut(s) | 1235, 1418, 2891 |
| BsmI | GAATGC | 3 cut(s) | 2248, 2506, 3431 |
| BsnI | GGCC | 6 cut(s) | 174, 320, 524, 1376, 3378, 3459 |
| BsoBI | CYCGRG | 2 cut(s) | 458, 1734 |
| Bsp119I | TTCGAA | 1 cut(s) | 2786 |
| Bsp13I | TCCGGA | 1 cut(s) | 739 |
| Bsp1407I | TGTACA | 1 cut(s) | 2708 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 929 |
| Bsp19I | CCATGG | 2 cut(s) | 1966, 2692 |
| BspANI | GGCC | 6 cut(s) | 174, 320, 524, 1376, 3378, 3459 |
| BspCNI | CTCAG | 5 cut(s) | 1003, 1057, 2200, 2554, 3625 |
| BspEI | TCCGGA | 1 cut(s) | 739 |
| BspFNI | CGCG | 3 cut(s) | 944, 1539, 3311 |
| BspLI | GGNNCC | 7 cut(s) | 252, 567, 1101, 1606, 2346, 2976, 3231 |
| BspMAI | CTGCAG | 3 cut(s) | 1864, 2447, 2689 |
| BspOI | GCTAGC | 2 cut(s) | 876, 2556 |
| BspPI | GGATC | 9 cut(s) | 179, 199, 204, 1498, 1581, 2195, 2552, 3247, 3469 |
| BspT104I | TTCGAA | 1 cut(s) | 2786 |
| BspT107I | GGYRCC | 2 cut(s) | 1099, 3229 |
| BsrBI | CCGCTC | 1 cut(s) | 297 |
| BsrDI | GCAATG | 3 cut(s) | 597, 1767, 2299 |
| BsrGI | TGTACA | 1 cut(s) | 2708 |
| BsrI | ACTGG | 7 cut(s) | 514, 1392, 1436, 1838, 2011, 2124, 2937 |
| BssHII | GCGCGC | 1 cut(s) | 1537 |
| BssNAI | GTATAC | 1 cut(s) | 3294 |
| BssNI | GRCGYC | 1 cut(s) | 1100 |
| BssT1I | CCWWGG | 3 cut(s) | 1966, 2692, 3454 |
| Bst1107I | GTATAC | 1 cut(s) | 3294 |
| Bst2UI | CCWGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| Bst4CI | ACNGT | 9 cut(s) | 307, 385, 925, 1114, 1234, 1484, 1628, 2093, 2997 |
| Bst6I | CTCTTC | 6 cut(s) | 60, 153, 1182, 2359, 3263, 3742 |
| BstACI | GRCGYC | 1 cut(s) | 1100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3380 |
| BstAUI | TGTACA | 1 cut(s) | 2708 |
| BstBAI | YACGTR | 1 cut(s) | 2495 |
| BstBI | TTCGAA | 1 cut(s) | 2786 |
| BstC8I | GCNNGC | 8 cut(s) | 830, 874, 1539, 1581, 1961, 2083, 2554, 3376 |
| BstDSI | CCRYGG | 5 cut(s) | 1233, 1966, 2092, 2692, 2993 |
| BstF5I | GGATG | 8 cut(s) | 291, 631, 1150, 1162, 1174, 1810, 2221, 2519 |
| BstFNI | CGCG | 3 cut(s) | 944, 1539, 3311 |
| BstH2I | RGCGCY | 2 cut(s) | 1039, 1103 |
| BstHHI | GCGC | 7 cut(s) | 699, 1038, 1102, 1539, 1541, 1965, 3511 |
| BstMAI | GTCTC | 4 cut(s) | 2131, 2525, 2583, 3412 |
| BstNI | CCWGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| BstNSI | RCATGY | 2 cut(s) | 1963, 2162 |
| BstSCI | CCNGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| BstSFI | CTRYAG | 6 cut(s) | 107, 1627, 1860, 2443, 2685, 3239 |
| BstUI | CGCG | 3 cut(s) | 944, 1539, 3311 |
| BstV2I | GAAGAC | 4 cut(s) | 81, 1004, 1675, 2481 |
| BstX2I | RGATCY | 6 cut(s) | 204, 1490, 1824, 2187, 3252, 3270 |
| BstYI | RGATCY | 6 cut(s) | 204, 1490, 1824, 2187, 3252, 3270 |
| BstZ17I | GTATAC | 1 cut(s) | 3294 |
| BsuI | GTATCC | 3 cut(s) | 439, 2605, 3186 |
| BsuRI | GGCC | 6 cut(s) | 174, 320, 524, 1376, 3378, 3459 |
| BtgI | CCRYGG | 5 cut(s) | 1233, 1966, 2092, 2692, 2993 |
| BtgZI | GCGATG | 1 cut(s) | 1004 |
| BtrI | CACGTC | 1 cut(s) | 1280 |
| BtsCI | GGATG | 8 cut(s) | 291, 631, 1150, 1162, 1174, 1810, 2221, 2519 |
| BtsI | GCAGTG | 2 cut(s) | 688, 2452 |
| BtsIMutI | CAGTG | 8 cut(s) | 507, 688, 1489, 1831, 2018, 2205, 2260, 2452 |
| Cac8I | GCNNGC | 8 cut(s) | 830, 874, 1539, 1581, 1961, 2083, 2554, 3376 |
| CfoI | GCGC | 7 cut(s) | 699, 1038, 1102, 1539, 1541, 1965, 3511 |
| Cfr13I | GGNCC | 3 cut(s) | 689, 1475, 2344 |
| CseI | GACGC | 1 cut(s) | 3717 |
| Csp6I | GTAC | 8 cut(s) | 394, 474, 1888, 1938, 2709, 2915, 3205, 3230 |
| CviQI | GTAC | 8 cut(s) | 394, 474, 1888, 1938, 2709, 2915, 3205, 3230 |
| DinI | GGCGCC | 1 cut(s) | 1101 |
| DraIII | CACNNNGTG | 2 cut(s) | 1484, 2387 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2123 |
| EaeI | YGGCCR | 2 cut(s) | 172, 3457 |
| Eam1104I | CTCTTC | 6 cut(s) | 60, 153, 1182, 2359, 3263, 3742 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2123 |
| EarI | CTCTTC | 6 cut(s) | 60, 153, 1182, 2359, 3263, 3742 |
| Eco130I | CCWWGG | 3 cut(s) | 1966, 2692, 3454 |
| Eco147I | AGGCCT | 1 cut(s) | 3378 |
| Eco32I | GATATC | 2 cut(s) | 705, 1787 |
| Eco47I | GGWCC | 3 cut(s) | 689, 1475, 2344 |
| Eco57I | CTGAAG | 6 cut(s) | 1736, 2493, 2622, 2840, 3244, 3387 |
| Eco72I | CACGTG | 1 cut(s) | 2495 |
| Eco88I | CYCGRG | 2 cut(s) | 458, 1734 |
| EcoRII | CCWGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| EcoRV | GATATC | 2 cut(s) | 705, 1787 |
| EcoT14I | CCWWGG | 3 cut(s) | 1966, 2692, 3454 |
| EgeI | GGCGCC | 1 cut(s) | 1101 |
| EheI | GGCGCC | 1 cut(s) | 1101 |
| ErhI | CCWWGG | 3 cut(s) | 1966, 2692, 3454 |
| FaqI | GGGAC | 3 cut(s) | 1235, 1418, 2891 |
| FauI | CCCGC | 1 cut(s) | 3304 |
| FauNDI | CATATG | 2 cut(s) | 781, 2398 |
| FbaI | TGATCA | 3 cut(s) | 978, 1105, 1147 |
| FblI | GTMKAC | 4 cut(s) | 1076, 3238, 3293, 3747 |
| FokI | GGATG | 8 cut(s) | 278, 638, 1157, 1169, 1181, 1817, 2208, 2506 |
| FspBI | CTAG | 8 cut(s) | 9, 873, 890, 1413, 1427, 2384, 2553, 3329 |
| FspI | TGCGCA | 1 cut(s) | 698 |
| GlaI | GCGC | 7 cut(s) | 698, 1037, 1101, 1538, 1540, 1964, 3510 |
| GsuI | CTGGAG | 4 cut(s) | 531, 1569, 1940, 2007 |
| HaeII | RGCGCY | 2 cut(s) | 1039, 1103 |
| HaeIII | GGCC | 6 cut(s) | 174, 320, 524, 1376, 3378, 3459 |
| HapII | CCGG | 4 cut(s) | 740, 877, 2978, 3699 |
| HgaI | GACGC | 1 cut(s) | 3717 |
| HhaI | GCGC | 7 cut(s) | 699, 1038, 1102, 1539, 1541, 1965, 3511 |
| Hin1I | GRCGYC | 1 cut(s) | 1100 |
| Hin6I | GCGC | 7 cut(s) | 697, 1036, 1100, 1537, 1539, 1963, 3509 |
| HinP1I | GCGC | 7 cut(s) | 697, 1036, 1100, 1537, 1539, 1963, 3509 |
| HincII | GTYRAC | 2 cut(s) | 987, 3748 |
| HindII | GTYRAC | 2 cut(s) | 987, 3748 |
| HindIII | AAGCTT | 3 cut(s) | 725, 753, 1843 |
| HpaI | GTTAAC | 1 cut(s) | 987 |
| HpaII | CCGG | 4 cut(s) | 740, 877, 2978, 3699 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 8 cut(s) | 1038, 1441, 1626, 1760, 1775, 2076, 2416, 3119 |
| HpyCH4III | ACNGT | 9 cut(s) | 307, 385, 925, 1114, 1234, 1484, 1628, 2093, 2997 |
| HpyCH4IV | ACGT | 5 cut(s) | 1279, 1566, 2494, 2768, 3296 |
| HpySE526I | ACGT | 5 cut(s) | 1279, 1566, 2494, 2768, 3296 |
| Hsp92I | GRCGYC | 1 cut(s) | 1100 |
| HspAI | GCGC | 7 cut(s) | 697, 1036, 1100, 1537, 1539, 1963, 3509 |
| KasI | GGCGCC | 1 cut(s) | 1099 |
| Kpn2I | TCCGGA | 1 cut(s) | 739 |
| KpnI | GGTACC | 1 cut(s) | 3233 |
| Ksp22I | TGATCA | 3 cut(s) | 978, 1105, 1147 |
| KspAI | GTTAAC | 1 cut(s) | 987 |
| LmnI | GCTCC | 7 cut(s) | 232, 302, 459, 640, 1324, 1588, 1879 |
| LweI | GCATC | 5 cut(s) | 14, 369, 430, 1495, 2473 |
| MaeI | CTAG | 8 cut(s) | 9, 873, 890, 1413, 1427, 2384, 2553, 3329 |
| MaeII | ACGT | 5 cut(s) | 1279, 1566, 2494, 2768, 3296 |
| MbiI | CCGCTC | 1 cut(s) | 297 |
| MfeI | CAATTG | 2 cut(s) | 3060, 3246 |
| MflI | RGATCY | 6 cut(s) | 204, 1490, 1824, 2187, 3252, 3270 |
| MlsI | TGGCCA | 1 cut(s) | 3459 |
| MluNI | TGGCCA | 1 cut(s) | 3459 |
| Mly113I | GGCGCC | 1 cut(s) | 1100 |
| MlyI | GAGTC | 6 cut(s) | 2508, 2527, 3173, 3296, 3604, 3743 |
| MmeI | TCCRAC | 3 cut(s) | 1468, 1645, 3090 |
| Mox20I | TGGCCA | 1 cut(s) | 3459 |
| MroI | TCCGGA | 1 cut(s) | 739 |
| MroXI | GAANNNNTTC | 4 cut(s) | 2368, 2940, 2943, 3091 |
| MscI | TGGCCA | 1 cut(s) | 3459 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1461, 1500, 2013, 2522, 2524 |
| Msp20I | TGGCCA | 1 cut(s) | 3459 |
| MspA1I | CMGCKG | 6 cut(s) | 1511, 1646, 1985, 2249, 2861, 3491 |
| MspI | CCGG | 4 cut(s) | 740, 877, 2978, 3699 |
| MspR9I | CCNGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| MunI | CAATTG | 2 cut(s) | 3060, 3246 |
| Mva1269I | GAATGC | 3 cut(s) | 2248, 2506, 3431 |
| MvaI | CCWGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| MvnI | CGCG | 3 cut(s) | 944, 1539, 3311 |
| NarI | GGCGCC | 1 cut(s) | 1100 |
| NcoI | CCATGG | 2 cut(s) | 1966, 2692 |
| NdeI | CATATG | 2 cut(s) | 781, 2398 |
| NheI | GCTAGC | 2 cut(s) | 872, 2552 |
| NlaIV | GGNNCC | 7 cut(s) | 252, 567, 1101, 1606, 2346, 2976, 3231 |
| NmeAIII | GCCGAG | 1 cut(s) | 1496 |
| NmuCI | GTSAC | 6 cut(s) | 811, 919, 1114, 2161, 3215, 3532 |
| NsbI | TGCGCA | 1 cut(s) | 698 |
| NspI | RCATGY | 2 cut(s) | 1963, 2162 |
| NspV | TTCGAA | 1 cut(s) | 2786 |
| OliI | CACNNNNGTG | 2 cut(s) | 2013, 2522 |
| PaeI | GCATGC | 1 cut(s) | 1963 |
| PaeR7I | CTCGAG | 1 cut(s) | 458 |
| PalAI | GGCGCGCC | 1 cut(s) | 1537 |
| PasI | CCCWGGG | 1 cut(s) | 3172 |
| PauI | GCGCGC | 1 cut(s) | 1537 |
| PceI | AGGCCT | 1 cut(s) | 3378 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2089, 2792 |
| PctI | GAATGC | 3 cut(s) | 2248, 2506, 3431 |
| PdmI | GAANNNNTTC | 4 cut(s) | 2368, 2940, 2943, 3091 |
| PfeI | GAWTC | 8 cut(s) | 89, 2783, 2788, 3077, 3280, 3323, 3525, 3575 |
| PfoI | TCCNGGA | 1 cut(s) | 2560 |
| PleI | GAGTC | 6 cut(s) | 2508, 2527, 3172, 3295, 3604, 3743 |
| PluTI | GGCGCC | 1 cut(s) | 1103 |
| PmaCI | CACGTG | 1 cut(s) | 2495 |
| PmlI | CACGTG | 1 cut(s) | 2495 |
| PpsI | GAGTC | 6 cut(s) | 2508, 2527, 3172, 3295, 3604, 3743 |
| Ppu21I | YACGTR | 1 cut(s) | 2495 |
| PshBI | ATTAAT | 1 cut(s) | 281 |
| PsiI | TTATAA | 1 cut(s) | 2757 |
| Psp6I | CCWGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| PspCI | CACGTG | 1 cut(s) | 2495 |
| PspGI | CCWGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| PspN4I | GGNNCC | 7 cut(s) | 252, 567, 1101, 1606, 2346, 2976, 3231 |
| PspPI | GGNCC | 3 cut(s) | 689, 1475, 2344 |
| PstI | CTGCAG | 3 cut(s) | 1864, 2447, 2689 |
| PsuI | RGATCY | 6 cut(s) | 204, 1490, 1824, 2187, 3252, 3270 |
| PteI | GCGCGC | 1 cut(s) | 1537 |
| PvuII | CAGCTG | 4 cut(s) | 1511, 1985, 2249, 2861 |
| RsaI | GTAC | 8 cut(s) | 395, 475, 1889, 1939, 2710, 2916, 3206, 3231 |
| RsaNI | GTAC | 8 cut(s) | 394, 474, 1888, 1938, 2709, 2915, 3205, 3230 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1461, 1500, 2013, 2522, 2524 |
| SalI | GTCGAC | 1 cut(s) | 3746 |
| Sau96I | GGNCC | 3 cut(s) | 689, 1475, 2344 |
| SchI | GAGTC | 6 cut(s) | 2508, 2527, 3173, 3296, 3604, 3743 |
| ScrFI | CCNGG | 5 cut(s) | 230, 1033, 1338, 2562, 3173 |
| SfaNI | GCATC | 5 cut(s) | 14, 369, 430, 1495, 2473 |
| SfcI | CTRYAG | 6 cut(s) | 107, 1627, 1860, 2443, 2685, 3239 |
| SfoI | GGCGCC | 1 cut(s) | 1101 |
| Sfr274I | CTCGAG | 1 cut(s) | 458 |
| SfuI | TTCGAA | 1 cut(s) | 2786 |
| SgsI | GGCGCGCC | 1 cut(s) | 1537 |
| SinI | GGWCC | 3 cut(s) | 689, 1475, 2344 |
| SlaI | CTCGAG | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1461, 1500, 2013, 2522, 2524 |
| SmlI | CTYRAG | 5 cut(s) | 338, 458, 493, 1846, 2699 |
| SmoI | CTYRAG | 5 cut(s) | 338, 458, 493, 1846, 2699 |
| SpeI | ACTAGT | 1 cut(s) | 1426 |
| SphI | GCATGC | 1 cut(s) | 1963 |
| SseBI | AGGCCT | 1 cut(s) | 3378 |
| SspDI | GGCGCC | 1 cut(s) | 1099 |
| SspI | AATATT | 1 cut(s) | 2319 |
| SspMI | CTAG | 8 cut(s) | 9, 873, 890, 1413, 1427, 2384, 2553, 3329 |
| StuI | AGGCCT | 1 cut(s) | 3378 |
| StyD4I | CCNGG | 5 cut(s) | 228, 1031, 1336, 2560, 3171 |
| StyI | CCWWGG | 3 cut(s) | 1966, 2692, 3454 |
| TaaI | ACNGT | 9 cut(s) | 307, 385, 925, 1114, 1234, 1484, 1628, 2093, 2997 |
| TaiI | ACGT | 5 cut(s) | 1282, 1569, 2497, 2771, 3299 |
| TatI | WGTACW | 3 cut(s) | 473, 2708, 3204 |
| TauI | GCSGC | 4 cut(s) | 947, 950, 1646, 3488 |
| TfiI | GAWTC | 8 cut(s) | 89, 2783, 2788, 3077, 3280, 3323, 3525, 3575 |
| TscAI | CASTG | 8 cut(s) | 514, 688, 1489, 1838, 2018, 2212, 2260, 2452 |
| TseFI | GTSAC | 6 cut(s) | 811, 919, 1114, 2161, 3215, 3532 |
| Tsp45I | GTSAC | 6 cut(s) | 811, 919, 1114, 2161, 3215, 3532 |
| TspGWI | ACGGA | 8 cut(s) | 558, 1241, 2200, 2357, 2512, 2893, 3008, 3537 |
| TspRI | CASTG | 8 cut(s) | 514, 688, 1489, 1838, 2018, 2212, 2260, 2452 |
| VpaK11BI | GGWCC | 3 cut(s) | 689, 1475, 2344 |
| VspI | ATTAAT | 1 cut(s) | 281 |
| XapI | RAATTY | 4 cut(s) | 333, 478, 2212, 2940 |
| XbaI | TCTAGA | 1 cut(s) | 8 |
| XceI | RCATGY | 2 cut(s) | 1963, 2162 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1661, 1915, 3676 |
| XhoI | CTCGAG | 1 cut(s) | 458 |
| XmiI | GTMKAC | 4 cut(s) | 1076, 3238, 3293, 3747 |
| XmnI | GAANNNNTTC | 4 cut(s) | 2368, 2940, 2943, 3091 |
| XspI | CTAG | 8 cut(s) | 9, 873, 890, 1413, 1427, 2384, 2553, 3329 |