Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Forward (+)

30704552 .. 30714188

Gene Structure 9637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3756 bp

ATGGCAGGCTTAGCCCCAAAGCATCCGAAGCAGAAGGAGGAGTCGGATTCGGCAGTTGCAGTTGGAGTGGGTGAAGAAGAAGACGACGAGTACGGCGCAAAGGAGGCAGTGCTCCAAAAGTACTTCCTTCAAGAATGGAAGCTCGTCAAGTCCATCTTAGACGACATCGTTTCGCACAAGCGCGTCTCCGATCCCTCCGCTCCCCACAAGATCCGATCCATTATGGACAAGTATCAAGAACAGGGTCAATTGGTCGAGCCTTACCTGGAGAGCATTGTTTCTCCGCTCATGTTTATCGTCCGCTCTAAGACAGTTGAATTAGGAGTGGCTTCAAACAAGATTCTTCAAGTAATTAAGCCTATATGCATCATTATCTACTCTCTGGTCACAGTTTGTGGGTACAAGGCCGTCGTCAGGTTCTTCCCGCATCAGGTTTCCGACTTGGAACTTGCTGTGTCTCTCTTGGAGAAGTGCCACCACACAACTTCAGTATCATCGTTGCGGCAGGAAAGTACAGGAGAGATGGAGGCCAAATGTGTGATACTTTTGTGGCTCTCTATTCTTGTGTTGGTTCCGTTTGATATCTCCACGGTTGATACTAGCATTGCAAACAACAGTAATCTTGGTAAACTAGAGCCAGCTCCGCTGGTATTGAGAATAACAGGGATATCTAAGGATTACCTTTCAAATGCTGGTCCTATGCGCACTATAGCTGCTTTGCTGCTCTCAAAGCTTCTAACACGTCCAGACATGCCAAAGGCCTTTTCCAGCTTCGTTGAATGGACGCATGAAGTCCTATCTTCTCTCACAGATGATGTCATGAATCACTTTCGCTTACTTGGAGCTTTAGAAGCCCTGGCTGCTATATTCAAGGCTGGTGGGCGGAAACCCTTGCTTGAGGTGGTTCCTATTGTCTGGGATGACATCTCATTGTTGATCAAGTCTAGCTATGCAGCTAAGAGTCCATTGCTTCGCAAGTATCTGATGAAATTAACTCAGAGGATAGGGCTTACTTGCCTCCCTCATCGTTCACCTTCCTGGCGCTATGTGGGAAAAACAAACTCGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAGCTGGCGAATGCAATGATGCTACAAATGCCAAGGATTTAAACTCTGAACCAAGTTCAACTTGCGAGATTATTGAGATGTTACTCACTGGACTGAGAGATACGGACACTGTTGTGCGTTGGTCTGCTGCAAAAGGTATTGGTCGCACTACTTCACGTCTTACAGCTGCCCTTTCAGAGGAGGTCCTATCATCTGTTTTGGAGCTGTTTTCGCCAGGCGAGGGTGATGGGTCATGGCATGGAGGTTGCTTAGCTTTGGCTGAATTGGCACGCAGAGGATTGCTCTTACCTGTCAGCCTTCCTAAAGTTGTACCTGTTGTTGTGAAGGCGCTACATTATGATATTCGAAGAGGTCCACACAGTGTTGGATCTCATGTACGAGATGCTGCAGCTTATGTTTGTTGGGCTTTTGGCCGTGCATACTATCATACGGATATGAGAAATATATTGGATCAGCTTGCGCCACATCTTCTAACAGTGGCCTGCTATGACCGTGAGGTTAATTGTAGAAGAGCAGCAGCAGCAGCTTTTCAGGAAAATGTTGGGAGACAGGGTAGTTACCCTCATGGAATTGACATAGTGAACACTGCAGACTATTTTTCACTTTCTTCACGAGCAAACTCTTATGTTCATGTTGCTGTCTCTATCGCTCAATATGAGGGATATCTTTATCCCTTTGTGGATGAGCTACTGTATAACAAAATTTGTCACTGGGAAAAAGGCTTAAGAGAACTTGCTGCCGAGGCTCTCTCTTCTCTTGTTAAATATGATCCTGAATATTTTGCAAACTATGCTTTGGAGAAAATAATTCCTTGTACTCTCTCATCTGATCTGTGCATGCGCCATGGAGCGACACTGGCAACTGGAGAACTTGTTTTAGCACTACATCAATGTGATTTTGCTCTTTCCGCTGATAAACAAAAACGTGTTGCTGGTGTTGTACCTGCTATTGCGAAAGCACGCCTTTATCGCGGGAAAGGTGGAGAGATTATGCGCTCAGCTGTTTCCCGCTTCATAGAATGTATATCTGTATCTTCTGTGTCGTTACCAGAAAAGATAAAGCGCAGTTTGCTTGATACTCTTAATGAGAACTTGAGACATCCTAATTCTCAGATTCAGGATGCAGCAGTTAAAGCTCTGAAGCACTTTGTGCAAGCATATCTAATTGCTGCAGATGTTGGAGGTGCTAGTATAACATCAAAGTACCTGGAACTGTTGACTGATCCAAATGTGGCTGTAAGAAGAGGATCAGCATTGGCAATAGGTGTTTTGCCCTGCAAACTTCTTGCCAATAGGTGGAAGGATGTGCTTCCGAAGCTTTGTAACTCTTGTGCAATTGAGGACAACCCTGATGATAGAGACGCGGAAGCACGAGTAAATGCAGTCAAAGGGCTTGTTTCACATTCTGGAGTCCAATTGATCGAGGATGACATGTCTTTGTTCCTTCTTATCAAGGACAGAATAATGACAGCTTTATTGAAAGCTCTCGATGACTATTCTGTGGATAACAGAGGTGATGTGGGTTCTTGGGTCCGCGAGGCTGCTATGAATGGCCTTGAGAGATGTACATATATCCTGTGCAAGAGAGATTCTATTGGTCTCAGTGGAAGATCAGGTGGAATTGATTCTGCAATTGAGCTGGAGCCCAATGCTGACAATCTCCAGTTACATTTGTTGTTTGATGCAAATCTTGCTACCAGTATAGTTGGGGGAATATGTAAGCAAGCTGTAGAGAAGATGGATAAACTGAGAGAAGCAGCTGCAAAGGTGCTACAGAGAATTTTGTACAATAATGTAGCTTACGTCGAACACATACCACACAGGAAAAAGTTGGAAGAAATTGTTCCTAATGAAGCTGACTTAAAGTGGGGGGTACCAACCTTTTCGTATCCTCGTTTTGTGCAATTGCTTCAGTTTGGCTGTTATAGCAGATCAGTGGTATCTGGGTTAGTTATCTCTATTGGTGGGTTGCAAGATTCTTTGAGGAAGGCATCACTCACAGCATTGTTAGAGTATCTTCAAGTGGTAAAAAGTGAAGACCAGAATGAAAAGTCCAGAGAGTATATGCTGTCTACTGACATGCTTTGGGTTCTTGAACACTATAGGAGATGTGACAGAGTCATTGTACCTTTATTGAAGACCATCGAGATTCTTTTCAGCAAAAGGATATTCTTGACTATGGAGAGTCAAACAGTTGTTTTCTGTGCTGGTGCTTTGGATTCTCTGGAAGTTGAATTAAAAGGATCAAAGGACTTTTCCAAGCTATATGCGGGCATTGCAATACTTGGATATATAGCTTCAGTTTCAGATTCCATAAATAGTCGGGCTTTCTCTCAGCTTCTCCGTTTTCTAGGCCATCGTTACCCCAAGATACGGAAAGCTTCTGCTGAACAAGTTTACCTTGTTCTCTTGCAAAATGAGGGTCTCGTGGCAGAAGACAAGATCGACAAAGCGCTTGAAATTATTTCAGAAACCTGCTGGGAAGGTGATACTGAAGCAGCAAAGCTCCAACGGTTCGAGTTATATGATATGGCTGGTCTTGACACAGATCAGATTCGTAAGACTAGTAACAGAGTATCAACTGGTGGTAACAGAAGCGCAACAATCACCGATGAAAATGCATCTTATTCCTCGTTAGTTGACTCAAGTGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

1251

Amino Acids

138.03

Weight (kDa)

6.58

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD	PF23579	75 - 265	1.2e-53	Tubulin-specific chaperone D-like, ARM repeat
ARM_TBCD_2nd	PF25767	323 - 557	1.3e-101	Tubulin-specific chaperone D-like, ARM repeats
TFCD_C	PF12612	933 - 1120	1.1e-56	Tubulin folding cofactor D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	704
Acc36I	ACCTGC	2 cut(s)	2050, 3581
Acc65I	GGTACC	1 cut(s)	2971
AccB1I	GGYRCC	1 cut(s)	2971
AccB7I	CCANNNNNTGG	1 cut(s)	2394
AccBSI	CCGCTC	3 cut(s)	200, 286, 303
AccI	GTMKAC	1 cut(s)	3170
AccII	CGCG	4 cut(s)	183, 2070, 2462, 2634
AclWI	GGATC	9 cut(s)	185, 205, 210, 1474, 1557, 1862, 2315, 2353, 3349
AcoI	YGGCCR	1 cut(s)	1510
AcsI	RAATTY	2 cut(s)	1800, 2877
AcuI	CTGAAG	5 cut(s)	471, 2258, 2993, 3381, 3612
AdeI	CACNNNGTG	2 cut(s)	1460, 2248
AfeI	AGCGCT	1 cut(s)	3552
AfiI	CCNNNNNNNGG	6 cut(s)	414, 430, 1276, 1319, 2394, 3471
AflII	CTTAAG	1 cut(s)	1822
AflIII	ACRYGT	3 cut(s)	740, 2023, 2529
AhlI	ACTAGT	1 cut(s)	3662
AjiI	CACGTC	2 cut(s)	743, 1256
AjnI	CCWGG	5 cut(s)	264, 855, 1037, 1312, 2304
AjuI	GAANNNNNNNTTGG	2 cut(s)	748, 780
AleI	CACNNNNGTG	1 cut(s)	1211
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	8 cut(s)	190, 462, 1639, 1744, 2188, 2451, 2702, 3527
AlwI	GGATC	9 cut(s)	185, 205, 210, 1474, 1557, 1862, 2315, 2353, 3349
Aor51HI	AGCGCT	1 cut(s)	3552
AoxI	GGCC	7 cut(s)	405, 528, 759, 1510, 1578, 2650, 3451
ApoI	RAATTY	2 cut(s)	1800, 2877
ArsI	GACNNNNNNTTYG	2 cut(s)	3505, 3537
Asp700I	GAANNNNTTC	2 cut(s)	2722, 2940
Asp718I	GGTACC	1 cut(s)	2971
AspS9I	GGNCC	4 cut(s)	695, 1282, 1451, 2629
AsuHPI	GGTGA	6 cut(s)	83, 1023, 1334, 2624, 3596, 3697
AsuII	TTCGAA	1 cut(s)	1444
AvaII	GGWCC	4 cut(s)	695, 1282, 1451, 2629
BaeI	ACNNNNGTAYC	4 cut(s)	474, 507, 533, 566
BanI	GGYRCC	1 cut(s)	2971
BanII	GRGCYC	1 cut(s)	2745
BauI	CACGAG	3 cut(s)	1710, 2469, 3524
BbsI	GAAGAC	4 cut(s)	87, 3141, 3242, 3540
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	6 cut(s)	161, 517, 1319, 2830, 3248, 3462
BceAI	ACGGC	3 cut(s)	109, 392, 1497
BcgI	CGANNNNNNTGC	2 cut(s)	3698, 3732
BciT130I	CCWGG	5 cut(s)	266, 857, 1039, 1314, 2306
BciVI	GTATCC	1 cut(s)	2997
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	8 cut(s)	190, 462, 1639, 1744, 2188, 2451, 2702, 3527
BcuI	ACTAGT	1 cut(s)	3662
BfaI	CTAG	6 cut(s)	600, 632, 945, 2286, 3449, 3663
BfmI	CTRYAG	7 cut(s)	708, 1485, 1686, 2268, 2826, 2870, 3199
BfoI	RGCGCY	3 cut(s)	1045, 1430, 3554
BfrI	CTTAAG	1 cut(s)	1822
BfuAI	ACCTGC	2 cut(s)	2050, 3581
BfuI	GTATCC	1 cut(s)	2997
BlpI	GCTNAGC	3 cut(s)	10, 1348, 2095
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	266, 857, 1039, 1314, 2306
Bme18I	GGWCC	4 cut(s)	695, 1282, 1451, 2629
BmgBI	CACGTC	2 cut(s)	743, 1256
BmgT120I	GGNCC	4 cut(s)	695, 1282, 1451, 2629
BmiI	GGNNCC	5 cut(s)	573, 906, 2630, 2742, 2973
BmrFI	CCNGG	5 cut(s)	266, 857, 1039, 1314, 2306
BmrI	ACTGGG	1 cut(s)	1819
BmuI	ACTGGG	1 cut(s)	1819
BpiI	GAAGAC	4 cut(s)	87, 3141, 3242, 3540
BplI	GAGNNNNNCTC	4 cut(s)	1365, 1397, 1832, 1864
BpmI	CTGGAG	5 cut(s)	287, 1983, 2526, 2744, 2759
Bpu1102I	GCTNAGC	3 cut(s)	10, 1348, 2095
Bpu14I	TTCGAA	1 cut(s)	1444
BpuEI	CTTGAG	4 cut(s)	917, 2212, 2675, 3727
BsaBI	GATNNNNATC	1 cut(s)	2784
BsaI	GGTCTC	2 cut(s)	2702, 3527
BsaJI	CCNNGG	5 cut(s)	588, 855, 1131, 1839, 1942
BsaXI	ACNNNNNCTCC	4 cut(s)	1636, 1666, 1956, 1986
Bsc4I	CCNNNNNNNGG	6 cut(s)	414, 430, 1276, 1319, 2394, 3471
Bse1I	ACTGG	7 cut(s)	1192, 1814, 1959, 1966, 2761, 2796, 3685
Bse3DI	GCAATG	4 cut(s)	603, 965, 1120, 3372
Bse8I	GATNNNNATC	1 cut(s)	2784
BseBI	CCWGG	5 cut(s)	266, 857, 1039, 1314, 2306
BseDI	CCNNGG	5 cut(s)	588, 855, 1131, 1839, 1942
BseGI	GGATG	7 cut(s)	22, 925, 1786, 2197, 2224, 2407, 2530
BseJI	GATNNNNATC	1 cut(s)	2784
BseLI	CCNNNNNNNGG	6 cut(s)	414, 430, 1276, 1319, 2394, 3471
BseMI	GCAATG	4 cut(s)	603, 965, 1120, 3372
BseMII	CTCAG	7 cut(s)	1010, 1184, 2109, 2222, 2713, 2837, 3446
BseNI	ACTGG	7 cut(s)	1192, 1814, 1959, 1966, 2761, 2796, 3685
BseRI	GAGGAG	2 cut(s)	53, 1292
BseYI	CCCAGC	2 cut(s)	1066, 3576
Bsh1236I	CGCG	4 cut(s)	183, 2070, 2462, 2634
BshFI	GGCC	7 cut(s)	407, 530, 761, 1512, 1580, 2652, 3453
BshNI	GGYRCC	1 cut(s)	2971
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	6 cut(s)	414, 430, 1276, 1319, 2394, 3471
BsmAI	GTCTC	8 cut(s)	190, 462, 1639, 1744, 2188, 2451, 2702, 3527
BsmBI	CGTCTC	2 cut(s)	190, 2451
BsmI	GAATGC	1 cut(s)	1115
BsnI	GGCC	7 cut(s)	407, 530, 761, 1512, 1580, 2652, 3453
Bso31I	GGTCTC	2 cut(s)	2702, 3527
Bsp119I	TTCGAA	1 cut(s)	1444
Bsp1286I	GDGCHC	2 cut(s)	114, 2745
Bsp1407I	TGTACA	2 cut(s)	2663, 2883
Bsp1720I	GCTNAGC	3 cut(s)	10, 1348, 2095
Bsp19I	CCATGG	1 cut(s)	1942
BspANI	GGCC	7 cut(s)	407, 530, 761, 1512, 1580, 2652, 3453
BspCNI	CTCAG	7 cut(s)	1009, 1185, 2108, 2221, 2712, 2838, 3445
BspFNI	CGCG	4 cut(s)	183, 2070, 2462, 2634
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	5 cut(s)	573, 906, 2630, 2742, 2973
BspMAI	CTGCAG	3 cut(s)	1489, 1690, 2272
BspMI	ACCTGC	2 cut(s)	2050, 3581
BspPI	GGATC	9 cut(s)	185, 205, 210, 1474, 1557, 1862, 2315, 2353, 3349
BspQI	GCTCTTC	1 cut(s)	1603
BspT104I	TTCGAA	1 cut(s)	1444
BspT107I	GGYRCC	1 cut(s)	2971
BspTI	CTTAAG	1 cut(s)	1822
BspTNI	GGTCTC	2 cut(s)	2702, 3527
BsrBI	CCGCTC	3 cut(s)	200, 286, 303
BsrDI	GCAATG	4 cut(s)	603, 965, 1120, 3372
BsrGI	TGTACA	2 cut(s)	2663, 2883
BsrI	ACTGG	7 cut(s)	1192, 1814, 1959, 1966, 2761, 2796, 3685
BssECI	CCNNGG	5 cut(s)	588, 855, 1131, 1839, 1942
BssSI	CACGAG	3 cut(s)	1710, 2469, 3524
BssT1I	CCWWGG	2 cut(s)	1131, 1942
Bst2BI	CACGAG	3 cut(s)	1710, 2469, 3524
Bst2UI	CCWGG	5 cut(s)	266, 857, 1039, 1314, 2306
Bst6I	CTCTTC	4 cut(s)	1441, 1603, 1855, 2335
BstAFI	CTTAAG	1 cut(s)	1822
BstAPI	GCANNNNNTGC	3 cut(s)	1889, 2248, 2789
BstAUI	TGTACA	2 cut(s)	2663, 2883
BstBI	TTCGAA	1 cut(s)	1444
BstDSI	CCRYGG	2 cut(s)	588, 1942
BstENI	CCTNNNNNAGG	1 cut(s)	1274
BstF5I	GGATG	7 cut(s)	22, 925, 1786, 2197, 2224, 2407, 2530
BstFNI	CGCG	4 cut(s)	183, 2070, 2462, 2634
BstH2I	RGCGCY	3 cut(s)	1045, 1430, 3554
BstMAI	GTCTC	8 cut(s)	190, 462, 1639, 1744, 2188, 2451, 2702, 3527
BstNI	CCWGG	5 cut(s)	266, 857, 1039, 1314, 2306
BstNSI	RCATGY	4 cut(s)	754, 1939, 2533, 3181
BstSCI	CCNGG	5 cut(s)	264, 855, 1037, 1312, 2304
BstSFI	CTRYAG	7 cut(s)	708, 1485, 1686, 2268, 2826, 2870, 3199
BstUI	CGCG	4 cut(s)	183, 2070, 2462, 2634
BstV2I	GAAGAC	4 cut(s)	87, 3141, 3242, 3540
BstX2I	RGATCY	2 cut(s)	210, 1466
BstYI	RGATCY	2 cut(s)	210, 1466
BsuI	GTATCC	1 cut(s)	2997
BsuRI	GGCC	7 cut(s)	407, 530, 761, 1512, 1580, 2652, 3453
BtgI	CCRYGG	2 cut(s)	588, 1942
BtrI	CACGTC	2 cut(s)	743, 1256
BtsCI	GGATG	7 cut(s)	22, 925, 1786, 2197, 2224, 2407, 2530
BtsI	GCAGTG	2 cut(s)	114, 1683
BveI	ACCTGC	2 cut(s)	2050, 3581
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	4 cut(s)	695, 1282, 1451, 2629
CseI	GACGC	3 cut(s)	172, 793, 2468
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
DraI	TTTAAA	1 cut(s)	1140
DraIII	CACNNNGTG	2 cut(s)	1460, 2248
EaeI	YGGCCR	1 cut(s)	1510
Eam1104I	CTCTTC	4 cut(s)	1441, 1603, 1855, 2335
EarI	CTCTTC	4 cut(s)	1441, 1603, 1855, 2335
EciI	GGCGGA	1 cut(s)	898
Eco130I	CCWWGG	2 cut(s)	1131, 1942
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	2745
Eco31I	GGTCTC	2 cut(s)	2702, 3527
Eco32I	GATATC	3 cut(s)	583, 669, 1763
Eco47I	GGWCC	4 cut(s)	695, 1282, 1451, 2629
Eco47III	AGCGCT	1 cut(s)	3552
Eco57I	CTGAAG	5 cut(s)	471, 2258, 2993, 3381, 3612
EcoNI	CCTNNNNNAGG	1 cut(s)	1274
EcoO109I	RGGNCCY	1 cut(s)	1282
EcoRII	CCWGG	5 cut(s)	264, 855, 1037, 1312, 2304
EcoRV	GATATC	3 cut(s)	583, 669, 1763
EcoT14I	CCWWGG	2 cut(s)	1131, 1942
EcoT22I	ATGCAT	2 cut(s)	368, 3721
EcoT38I	GRGCYC	1 cut(s)	2745
ErhI	CCWWGG	2 cut(s)	1131, 1942
Esp3I	CGTCTC	2 cut(s)	190, 2451
FalI	AAGNNNNNCTT	8 cut(s)	140, 172, 1144, 1176, 2046, 2078, 3483, 3515
FauI	CCCGC	4 cut(s)	432, 2063, 2114, 3361
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	3170
FokI	GGATG	7 cut(s)	9, 932, 1793, 2184, 2231, 2414, 2537
FriOI	GRGCYC	1 cut(s)	2745
FspAI	RTGCGCAY	1 cut(s)	704
FspBI	CTAG	6 cut(s)	600, 632, 945, 2286, 3449, 3663
FspI	TGCGCA	1 cut(s)	704
GsaI	CCCAGC	2 cut(s)	1070, 3580
GsuI	CTGGAG	5 cut(s)	287, 1983, 2526, 2744, 2759
HaeII	RGCGCY	3 cut(s)	1045, 1430, 3554
HaeIII	GGCC	7 cut(s)	407, 530, 761, 1512, 1580, 2652, 3453
HgaI	GACGC	3 cut(s)	172, 793, 2468
HincII	GTYRAC	2 cut(s)	2316, 3739
HindII	GTYRAC	2 cut(s)	2316, 3739
HindIII	AAGCTT	3 cut(s)	731, 2414, 3477
HphI	GGTGA	6 cut(s)	83, 1023, 1334, 2624, 3596, 3697
Hpy166II	GTNNAC	8 cut(s)	629, 1031, 1454, 1681, 2316, 3171, 3496, 3739
Hpy8I	GTNNAC	8 cut(s)	629, 1031, 1454, 1681, 2316, 3171, 3496, 3739
Hpy99I	CGWCG	3 cut(s)	89, 413, 2906
HpyAV	CCTTC	9 cut(s)	28, 137, 1044, 1406, 1417, 2392, 2552, 3079, 3575
HpyCH4IV	ACGT	4 cut(s)	742, 1255, 2023, 2901
HpySE526I	ACGT	4 cut(s)	742, 1255, 2023, 2901
KpnI	GGTACC	1 cut(s)	2975
Ksp22I	TGATCA	1 cut(s)	936
LguI	GCTCTTC	1 cut(s)	1603
LmnI	GCTCC	8 cut(s)	117, 205, 646, 842, 1300, 1946, 2740, 3609
MaeI	CTAG	6 cut(s)	600, 632, 945, 2286, 3449, 3663
MaeII	ACGT	4 cut(s)	742, 1255, 2023, 2901
MbiI	CCGCTC	3 cut(s)	200, 286, 303
MfeI	CAATTG	5 cut(s)	248, 2433, 2513, 2730, 3002
MflI	RGATCY	2 cut(s)	210, 1466
MhlI	GDGCHC	2 cut(s)	114, 2745
MlyI	GAGTC	6 cut(s)	50, 970, 2517, 3225, 3292, 3734
MmeI	TCCRAC	7 cut(s)	24, 43, 462, 1444, 2257, 2910, 3631
Mph1103I	ATGCAT	2 cut(s)	368, 3721
MroXI	GAANNNNTTC	2 cut(s)	2722, 2940
MslI	CAYNNNNRTG	2 cut(s)	1211, 1989
MspA1I	CMGCKG	5 cut(s)	646, 1265, 2009, 2099, 2858
MspCI	CTTAAG	1 cut(s)	1822
MspR9I	CCNGG	5 cut(s)	266, 857, 1039, 1314, 2306
MunI	CAATTG	5 cut(s)	248, 2433, 2513, 2730, 3002
Mva1269I	GAATGC	1 cut(s)	1115
MvaI	CCWGG	5 cut(s)	266, 857, 1039, 1314, 2306
MvnI	CGCG	4 cut(s)	183, 2070, 2462, 2634
NcoI	CCATGG	1 cut(s)	1942
NlaIV	GGNNCC	5 cut(s)	573, 906, 2630, 2742, 2973
NmeAIII	GCCGAG	1 cut(s)	1864
NmuCI	GTSAC	3 cut(s)	385, 1805, 3209
NsbI	TGCGCA	1 cut(s)	704
NsiI	ATGCAT	2 cut(s)	368, 3721
NspI	RCATGY	4 cut(s)	754, 1939, 2533, 3181
NspV	TTCGAA	1 cut(s)	1444
OliI	CACNNNNGTG	1 cut(s)	1211
PaeI	GCATGC	1 cut(s)	1939
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	1 cut(s)	2529
PciSI	GCTCTTC	1 cut(s)	1603
PctI	GAATGC	1 cut(s)	1115
PdmI	GAANNNNTTC	2 cut(s)	2722, 2940
PflFI	GACNNNGTC	1 cut(s)	3215
PflMI	CCANNNNNTGG	1 cut(s)	2394
PleI	GAGTC	6 cut(s)	49, 969, 2516, 3224, 3291, 3734
PpsI	GAGTC	6 cut(s)	49, 969, 2516, 3224, 3291, 3734
PpuMI	RGGWCCY	1 cut(s)	1282
PscI	ACATGT	1 cut(s)	2529
Psp5II	RGGWCCY	1 cut(s)	1282
Psp6I	CCWGG	5 cut(s)	264, 855, 1037, 1312, 2304
PspFI	CCCAGC	2 cut(s)	1066, 3576
PspGI	CCWGG	5 cut(s)	264, 855, 1037, 1312, 2304
PspN4I	GGNNCC	5 cut(s)	573, 906, 2630, 2742, 2973
PspPI	GGNCC	4 cut(s)	695, 1282, 1451, 2629
PspPPI	RGGWCCY	1 cut(s)	1282
PstI	CTGCAG	3 cut(s)	1489, 1690, 2272
PsuI	RGATCY	2 cut(s)	210, 1466
PsyI	GACNNNGTC	1 cut(s)	3215
PvuII	CAGCTG	3 cut(s)	1265, 2099, 2858
RseI	CAYNNNNRTG	2 cut(s)	1211, 1989
SapI	GCTCTTC	1 cut(s)	1603
Sau96I	GGNCC	4 cut(s)	695, 1282, 1451, 2629
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	6 cut(s)	50, 970, 2517, 3225, 3292, 3734
ScrFI	CCNGG	5 cut(s)	266, 857, 1039, 1314, 2306
SduI	GDGCHC	2 cut(s)	114, 2745
SfcI	CTRYAG	7 cut(s)	708, 1485, 1686, 2268, 2826, 2870, 3199
SfuI	TTCGAA	1 cut(s)	1444
SinI	GGWCC	4 cut(s)	695, 1282, 1451, 2629
SmiMI	CAYNNNNRTG	2 cut(s)	1211, 1989
SmlI	CTYRAG	5 cut(s)	896, 1822, 2191, 2654, 3742
SmoI	CTYRAG	5 cut(s)	896, 1822, 2191, 2654, 3742
SpeI	ACTAGT	1 cut(s)	3662
SphI	GCATGC	1 cut(s)	1939
SseBI	AGGCCT	1 cut(s)	761
SspI	AATATT	1 cut(s)	1877
SspMI	CTAG	6 cut(s)	600, 632, 945, 2286, 3449, 3663
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	5 cut(s)	264, 855, 1037, 1312, 2304
StyI	CCWWGG	2 cut(s)	1131, 1942
TaiI	ACGT	4 cut(s)	745, 1258, 2026, 2904
TaqI	TCGA	8 cut(s)	255, 1444, 2520, 2586, 2904, 3243, 3543, 3615
TatI	WGTACW	5 cut(s)	120, 512, 1913, 2663, 2883
TauI	GCSGC	1 cut(s)	505
TseFI	GTSAC	3 cut(s)	385, 1805, 3209
Tsp45I	GTSAC	3 cut(s)	385, 1805, 3209
TspDTI	ATGAA	9 cut(s)	804, 836, 1001, 1718, 2101, 2660, 2964, 3159, 3726
TspGWI	ACGGA	5 cut(s)	564, 1217, 1544, 3431, 3487
Tth111I	GACNNNGTC	1 cut(s)	3215
Van91I	CCANNNNNTGG	1 cut(s)	2394
Vha464I	CTTAAG	1 cut(s)	1822
VpaK11BI	GGWCC	4 cut(s)	695, 1282, 1451, 2629
XagI	CCTNNNNNAGG	1 cut(s)	1274
XapI	RAATTY	2 cut(s)	1800, 2877
XceI	RCATGY	4 cut(s)	754, 1939, 2533, 3181
XmiI	GTMKAC	1 cut(s)	3170
XmnI	GAANNNNTTC	2 cut(s)	2722, 2940
XspI	CTAG	6 cut(s)	600, 632, 945, 2286, 3449, 3663
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	2 cut(s)	368, 3721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.