Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Forward (+)

31554070 .. 31564421

Gene Structure 10352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3822 bp

ATGGCAGGCTTAGCCCCAAAGCATCAGAAGCAGAAGGAGGAGTCGGAGCCGGCAGTTGCAGTTGGAGTGGGTGAAGAAGAAGACGACGAGTACGGCGCAAAGGAGGCAGTGCTCCAAAAGTACTTCCTTCAAGAATGGAAGCTCGTCAAGTCCATCTTAGACGACATCGTTTCGCACAAGCGCGTCTCCGATCCCTCCGCTCCCCACAAGATCCGATCCATTATGGACAAGTATCAAGAACAGGGTCAATTGGTCGAGCCTTACCTGGAGAGCATTGTTTCTCCGCTCATGTTTATCGTCCGCTCTAAGACAGTTGAATTAGGAGTGGCTTCAAACAAGATTCTTCAAGTAATTAAGCCTATATGCATCATTATCTACTCTCTGGTCACAGTTTGTGGGTACAAGGCCGTCGTCAGGTTCTTCCCGCATCAGGTTTCTGACTTGGAACTTGCTGTGTCCCTCTTGGAGAAGTGCCACCACACAACTTCAGTATCATCGTTGCGGCAGGAAAGTACAGGAGAGATGGAGGCCAAATGTGTGATACTTTTGTGGCTCTCTATTCTTGTGTTGGTTCCGTTTGATATCTCCACGGTTGATACTAGCATTGCAAACAACAGTAATCTTGGTAAACTTGAGCCAGCTCCGCTGGTATTGAGAATAACAGGGATATCTAAGGATTACCTTTCAAATGCTGGTCCTATGCGCACTATAGCTGCTTTGCTGCTCTCAAAGCTTCTAACACGTCCAGACATGCCAAAGGCCTTTTCCAGCTTCGTTGAATGGACGCATGAAGTCCTATCTTCTCTCACAGATGATGTCATGAATCACTTTCGCTTACTTGGAGCTTTAGAAGCCCTGGCTGCTATATTCAAGGCTGGTGGGCGGAAACCCTTGCTTGATGTGGTTCCTATTGTCTGGGATGACATCTCATTGTTGATCAAGTCTAGCTATGCAGCTAAGAGTCCATTGCTTCGCAAGTATCTGATGAAATTAACTCAGAGGATAGGGCTTACTTGCCTCCCTCATCGTTCACCTTCCTGGCGCTATGTGGGAAAAACAAACTCGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAGCTGGCGAATGCAATGATGCTACAAATGCCAAGGATTTAAACTCAGAACCAAGTTCAACTTGCGTGGAAGATGAAGAAATGGATGTTCCAGAAATTGTAGAGGAGATTATTGAGATGTTACTCACTGGACTGAGAGATACGGACACTGTTGTGCGTTGGTCTGCTGCAAAAGGTATTGGTCGCACTACTTCACGTCTTACAGCTGCCCTTTCAGAGGAGGTCCTATCATCTGTTTTGGAGCTGTTTTCACCAGGCGAGGGTGATGGGTCATGGCATGGAGGTTGCTTAGCTTTGGCTGAATTGGCACGCAGAGGATTGCTCTTACCTGTCAGCCTTCCTAAAGTTGTACCTGTTGTTGTGAAGGCGCTACATTATGATATTCGAAGAGGTCCACACAGTGTTGGATCTCATGTACGAGATGCTGCAGCTTATGTTTGTTGGGCTTTTGGCCGTGCATACTATCATACGGATATGAGAAATATATTGGATCAGCTTGCGCCACATCTTCTAACAGTGGCCTGCTATGACCGTGAGGTTAATTGTAGAAGAGCAGCAGCAGCAGCTTTTCAGGAAAATGTTGGGAGACAGGGTAGTTACCCTCATGGAATTGACATAGTGAACACTGCAGACTATTTTTCACTTTCTTCACGAGCAAACTCTTATGTTCATGTTGCTGTCTCTATCGCTCAATATGAGGGATATCTTTATCCCTTTGTGGATGAGCTACTGTATAACAAAATTTGTCACTGGGAAAAAGGCTTAAGAGAACTTGCTGCCGAGGCTCTCTCTTCTCTTGTTAAATATGATCCTGAATATTTTGCAAACTATGCTTTGGAGAAAATACTTCCTTGTACTCTCTCATCTGATCTGTGCATGCGCCATGGAGCGACACTGGCAACTGGAGAACTTGTTTTAGCACTACATCAATGTGATTATGCTCTTTCCGCTGATAAACAAAAACGTGTTGCTGGTGTTGTACCTGCTATTGCGAAAGCACGCCTATATCGCGGGAAAGGTGGAGAGATTATGCGCTCAGCTGTTTCCCGCTTCATAGAATGTATATCTGTATCTTCTGTGTCGTTACGAGAAAAGATAAAGCGCAGTTTGCTTGATACTCTTAATGAGAACTTGAGACATCCTAATTCTCAGATTCAGGATGCAGCAGTTAAAGCTCTGAAGCACTTTGTGCAAGCATATCTAATTGCTGCAGATGTTGGAGGTGCTAGTATAACATCAAAGTACCTGGAACTGTTGACTGATCCAAATGTGGCTGTAAGAAGAGGATCAGCATTGGCAATAGGTGTTTTGCCCTGCAAACTTCTTGCCAATAGGTGGAAGGATGTGCTTCTGAAGCTTTGTAACTCTTGTGCAATTGAGGACAACCCTGATGATAGAGATGCGGAAGCACGAGTAAATGCTGTCAAAGGGCTTGTTTCAGTATGTGAAGCATTAACTCAGGAAAAGGAGCATTCTGGAGTCCAATTGATCGAGGATGACATGTCTTTGTTCCTTCTTATCAAGGATAGAATAATGACAGCTTTATTGAAAGCTCTCGATGACTATTCTGTGGATAACAGAGGTGATGTGGGTTCTTGGGTCCGCGAGGCTGCTATGAATGGCCTTGAGAGATGTACATATATCCTGTGCAAGAGAGATTCTATTGGTCTCAGTGGAAGATCAGGTGGAATCGATTCTGCAATTGAGCTGGAGCCCAATGCTGACAATCTCCAGTTACATTTGTTGTTTGATGCAAATCTTGCTACCAGTATAGTTGGGGGAATATGTAAGCAAGCTGTAGAGAAGATGGATAAACTGAGAGAAGCAGCTGCAAAGGTGCTACAGAGAATTTTGTACAATAATGTAGCTTACGTCGAACACATACCACACAGGAAAAAGTTGGAAGAAATTGTTCCTAATGAAGCTGACTTAAAGTGGGGGGTACCAACCTTTTCGTATCCTCGTTTTGTGCAATTGCTTCAGTTTGGCTGTTATAGCAGATCAGTGGTATCTGGGTTAGTTATCTCTATTGGTGGGTTGCAAGATTCTTTGAGGAAGGCATCACTCACAGCATTGTTAGAGTATCTTCAAGTGGTAAAAAGTGAAGACCAGAATGAAAAGTCCAGAGAGTATATGCTGTCTACTGACATGCTTTGGGTTCTTGAACACTATAGGAGATGTGACAGAGTCATTGTACCTTTATTGAAGACCATTGAGATTCTTTTCAGCAAAAGGATATTCTTGACTATGGAGAGTCAAACAGTTGTTTTCTGTGCTGGTGCTTTGGATTCTCTGGAAGTTGAATTAAAAGGATCAAAGGACTTTTCCAAGCTATATGCGGGCATTGCAATACTTGGATATATAGCTTCAGTTTCAGATTCCATAAATAGTCGGGCTTTCTCTCAGCTTCTCCGTTTTCTAGGCCATCGTTACCCCAAGATACGGAAAGCTTCTGCTGAACAAGTTTACCTTGTTCTCTTGCAAAATGAGGGTCTCGTGGCTGAAGACAAGATCGACAAAGCGCTTGAAATTATTTCAGAAACCTGCTGGGAAGGTGATACTGAAGCAGCAAAGCTCCAACGGTTCGAGTTATATGATATGGCTGGTCTTGACACTGATCAGATTCGTAAGACTAGTAACAGAGTATCAACTGGTAACAGAAGCGCAACAATCACTGATGAAAATGCATCTTATTCCTCGTTAGTCGACTCAAGTGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

1273

Amino Acids

140.75

Weight (kDa)

6.12

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD	PF23579	75 - 265	1.3e-53	Tubulin-specific chaperone D-like, ARM repeat
ARM_TBCD_2nd	PF25767	323 - 570	3.1e-108	Tubulin-specific chaperone D-like, ARM repeats
TFCD_C	PF12612	956 - 1143	1.1e-56	Tubulin folding cofactor D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	704
Acc36I	ACCTGC	2 cut(s)	2089, 3650
Acc65I	GGTACC	1 cut(s)	3040
AccB1I	GGYRCC	1 cut(s)	3040
AccB7I	CCANNNNNTGG	1 cut(s)	2433
AccBSI	CCGCTC	3 cut(s)	200, 286, 303
AccI	GTMKAC	2 cut(s)	3239, 3804
AccII	CGCG	3 cut(s)	183, 2109, 2703
AclWI	GGATC	9 cut(s)	185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418
AcoI	YGGCCR	1 cut(s)	1549
AcsI	RAATTY	2 cut(s)	1839, 2946
AcuI	CTGAAG	7 cut(s)	471, 2297, 2471, 3062, 3450, 3621, 3681
AdeI	CACNNNGTG	2 cut(s)	1499, 2287
AfeI	AGCGCT	1 cut(s)	3621
AfiI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
AflII	CTTAAG	1 cut(s)	1861
AflIII	ACRYGT	3 cut(s)	740, 2062, 2598
AhlI	ACTAGT	1 cut(s)	3731
AjiI	CACGTC	2 cut(s)	743, 1295
AjnI	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
AjuI	GAANNNNNNNTTGG	2 cut(s)	748, 780
AleI	CACNNNNGTG	1 cut(s)	1250
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	6 cut(s)	190, 1678, 1783, 2227, 2771, 3596
AlwI	GGATC	9 cut(s)	185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418
Aor51HI	AGCGCT	1 cut(s)	3621
AoxI	GGCC	7 cut(s)	405, 528, 759, 1549, 1617, 2719, 3520
ApoI	RAATTY	2 cut(s)	1839, 2946
ArsI	GACNNNNNNTTYG	2 cut(s)	3574, 3606
Asp700I	GAANNNNTTC	2 cut(s)	2791, 3009
Asp718I	GGTACC	1 cut(s)	3040
AspS9I	GGNCC	4 cut(s)	695, 1321, 1490, 2698
AsuHPI	GGTGA	6 cut(s)	83, 1023, 1341, 1373, 2693, 3665
AsuII	TTCGAA	1 cut(s)	1483
AvaII	GGWCC	4 cut(s)	695, 1321, 1490, 2698
BaeI	ACNNNNGTAYC	4 cut(s)	474, 507, 533, 566
BanI	GGYRCC	1 cut(s)	3040
BanII	GRGCYC	1 cut(s)	2814
BauI	CACGAG	3 cut(s)	1749, 2508, 3593
BbsI	GAAGAC	4 cut(s)	87, 3210, 3311, 3609
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	5 cut(s)	161, 517, 1358, 2899, 3531
BceAI	ACGGC	3 cut(s)	109, 392, 1536
BciT130I	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BciVI	GTATCC	1 cut(s)	3066
BclI	TGATCA	2 cut(s)	936, 3715
BcoDI	GTCTC	6 cut(s)	190, 1678, 1783, 2227, 2771, 3596
BcuI	ACTAGT	1 cut(s)	3731
BfaI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
BfmI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
BfoI	RGCGCY	3 cut(s)	1045, 1469, 3623
BfrI	CTTAAG	1 cut(s)	1861
BfuAI	ACCTGC	2 cut(s)	2089, 3650
BfuI	GTATCC	1 cut(s)	3066
BlpI	GCTNAGC	3 cut(s)	10, 1387, 2134
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
Bme18I	GGWCC	4 cut(s)	695, 1321, 1490, 2698
BmgBI	CACGTC	2 cut(s)	743, 1295
BmgT120I	GGNCC	4 cut(s)	695, 1321, 1490, 2698
BmiI	GGNNCC	6 cut(s)	48, 573, 906, 2699, 2811, 3042
BmrFI	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
BmrI	ACTGGG	1 cut(s)	1858
BmuI	ACTGGG	1 cut(s)	1858
BpiI	GAAGAC	4 cut(s)	87, 3210, 3311, 3609
BplI	GAGNNNNNCTC	4 cut(s)	1404, 1436, 1871, 1903
BpmI	CTGGAG	5 cut(s)	287, 2022, 2595, 2813, 2828
Bpu1102I	GCTNAGC	3 cut(s)	10, 1387, 2134
Bpu14I	TTCGAA	1 cut(s)	1483
BpuEI	CTTGAG	4 cut(s)	653, 2251, 2744, 3793
Bsa29I	ATCGAT	1 cut(s)	2790
BsaBI	GATNNNNATC	1 cut(s)	2853
BsaI	GGTCTC	2 cut(s)	2771, 3596
BsaJI	CCNNGG	5 cut(s)	588, 855, 1131, 1878, 1981
BsaXI	ACNNNNNCTCC	4 cut(s)	1675, 1705, 1995, 2025
Bsc4I	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	7 cut(s)	1231, 1853, 1998, 2005, 2830, 2865, 3754
Bse3DI	GCAATG	4 cut(s)	603, 965, 1120, 3441
Bse8I	GATNNNNATC	1 cut(s)	2853
BseBI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BseCI	ATCGAT	1 cut(s)	2790
BseDI	CCNNGG	5 cut(s)	588, 855, 1131, 1878, 1981
BseGI	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BseJI	GATNNNNATC	1 cut(s)	2853
BseLI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
BseMI	GCAATG	4 cut(s)	603, 965, 1120, 3441
BseMII	CTCAG	9 cut(s)	1010, 1158, 1223, 2148, 2261, 2570, 2782, 2906, 3515
BseNI	ACTGG	7 cut(s)	1231, 1853, 1998, 2005, 2830, 2865, 3754
BseRI	GAGGAG	3 cut(s)	53, 1217, 1331
BseYI	CCCAGC	2 cut(s)	1066, 3645
Bsh1236I	CGCG	3 cut(s)	183, 2109, 2703
BshFI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BshNI	GGYRCC	1 cut(s)	3040
BshVI	ATCGAT	1 cut(s)	2790
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
BsmAI	GTCTC	6 cut(s)	190, 1678, 1783, 2227, 2771, 3596
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	2 cut(s)	1115, 2569
BsnI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
Bso31I	GGTCTC	2 cut(s)	2771, 3596
Bsp119I	TTCGAA	1 cut(s)	1483
Bsp1286I	GDGCHC	2 cut(s)	114, 2814
Bsp1407I	TGTACA	2 cut(s)	2732, 2952
Bsp1720I	GCTNAGC	3 cut(s)	10, 1387, 2134
Bsp19I	CCATGG	1 cut(s)	1981
BspANI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BspCNI	CTCAG	9 cut(s)	1009, 1157, 1224, 2147, 2260, 2569, 2781, 2907, 3514
BspDI	ATCGAT	1 cut(s)	2790
BspFNI	CGCG	3 cut(s)	183, 2109, 2703
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	6 cut(s)	48, 573, 906, 2699, 2811, 3042
BspMAI	CTGCAG	3 cut(s)	1528, 1729, 2311
BspMI	ACCTGC	2 cut(s)	2089, 3650
BspPI	GGATC	9 cut(s)	185, 205, 210, 1513, 1596, 1901, 2354, 2392, 3418
BspQI	GCTCTTC	1 cut(s)	1642
BspT104I	TTCGAA	1 cut(s)	1483
BspT107I	GGYRCC	1 cut(s)	3040
BspTI	CTTAAG	1 cut(s)	1861
BspTNI	GGTCTC	2 cut(s)	2771, 3596
BsrBI	CCGCTC	3 cut(s)	200, 286, 303
BsrDI	GCAATG	4 cut(s)	603, 965, 1120, 3441
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	2 cut(s)	2732, 2952
BsrI	ACTGG	7 cut(s)	1231, 1853, 1998, 2005, 2830, 2865, 3754
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	588, 855, 1131, 1878, 1981
BssSI	CACGAG	3 cut(s)	1749, 2508, 3593
BssT1I	CCWWGG	2 cut(s)	1131, 1981
Bst2BI	CACGAG	3 cut(s)	1749, 2508, 3593
Bst2UI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
Bst6I	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
BstAFI	CTTAAG	1 cut(s)	1861
BstAPI	GCANNNNNTGC	3 cut(s)	1928, 2287, 2858
BstAUI	TGTACA	2 cut(s)	2732, 2952
BstBI	TTCGAA	1 cut(s)	1483
BstDSI	CCRYGG	2 cut(s)	588, 1981
BstENI	CCTNNNNNAGG	1 cut(s)	1313
BstF5I	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BstFNI	CGCG	3 cut(s)	183, 2109, 2703
BstH2I	RGCGCY	3 cut(s)	1045, 1469, 3623
BstMAI	GTCTC	6 cut(s)	190, 1678, 1783, 2227, 2771, 3596
BstNI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BstNSI	RCATGY	4 cut(s)	754, 1978, 2602, 3250
BstSCI	CCNGG	5 cut(s)	264, 855, 1037, 1351, 2343
BstSFI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
BstUI	CGCG	3 cut(s)	183, 2109, 2703
BstV2I	GAAGAC	4 cut(s)	87, 3210, 3311, 3609
BstX2I	RGATCY	2 cut(s)	210, 1505
BstYI	RGATCY	2 cut(s)	210, 1505
Bsu15I	ATCGAT	1 cut(s)	2790
BsuI	GTATCC	1 cut(s)	3066
BsuRI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BsuTUI	ATCGAT	1 cut(s)	2790
BtgI	CCRYGG	2 cut(s)	588, 1981
BtrI	CACGTC	2 cut(s)	743, 1295
BtsCI	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BtsI	GCAGTG	2 cut(s)	114, 1722
BveI	ACCTGC	2 cut(s)	2089, 3650
CciI	TCATGA	1 cut(s)	819
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	4 cut(s)	695, 1321, 1490, 2698
ClaI	ATCGAT	1 cut(s)	2790
CseI	GACGC	2 cut(s)	172, 793
CspCI	CAANNNNNGTGG	4 cut(s)	859, 894, 1146, 1181
DraI	TTTAAA	1 cut(s)	1140
DraIII	CACNNNGTG	2 cut(s)	1499, 2287
EaeI	YGGCCR	1 cut(s)	1549
Eam1104I	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
EarI	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
EciI	GGCGGA	1 cut(s)	898
Eco130I	CCWWGG	2 cut(s)	1131, 1981
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	2814
Eco31I	GGTCTC	2 cut(s)	2771, 3596
Eco32I	GATATC	3 cut(s)	583, 669, 1802
Eco47I	GGWCC	4 cut(s)	695, 1321, 1490, 2698
Eco47III	AGCGCT	1 cut(s)	3621
Eco57I	CTGAAG	7 cut(s)	471, 2297, 2471, 3062, 3450, 3621, 3681
EcoNI	CCTNNNNNAGG	1 cut(s)	1313
EcoO109I	RGGNCCY	1 cut(s)	1321
EcoRII	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
EcoRV	GATATC	3 cut(s)	583, 669, 1802
EcoT14I	CCWWGG	2 cut(s)	1131, 1981
EcoT22I	ATGCAT	2 cut(s)	368, 3787
EcoT38I	GRGCYC	1 cut(s)	2814
ErhI	CCWWGG	2 cut(s)	1131, 1981
Esp3I	CGTCTC	1 cut(s)	190
FalI	AAGNNNNNCTT	6 cut(s)	140, 172, 1144, 1176, 3552, 3584
FaqI	GGGAC	1 cut(s)	442
FauI	CCCGC	4 cut(s)	432, 2102, 2153, 3430
FbaI	TGATCA	2 cut(s)	936, 3715
FblI	GTMKAC	2 cut(s)	3239, 3804
FokI	GGATG	7 cut(s)	932, 1196, 1832, 2223, 2270, 2453, 2606
FriOI	GRGCYC	1 cut(s)	2814
FspAI	RTGCGCAY	1 cut(s)	704
FspBI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
FspI	TGCGCA	1 cut(s)	704
GsaI	CCCAGC	2 cut(s)	1070, 3649
GsuI	CTGGAG	5 cut(s)	287, 2022, 2595, 2813, 2828
HaeII	RGCGCY	3 cut(s)	1045, 1469, 3623
HaeIII	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	2 cut(s)	172, 793
HincII	GTYRAC	2 cut(s)	2355, 3805
HindII	GTYRAC	2 cut(s)	2355, 3805
HindIII	AAGCTT	3 cut(s)	731, 2453, 3546
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	6 cut(s)	83, 1023, 1341, 1373, 2693, 3665
Hpy166II	GTNNAC	8 cut(s)	629, 1031, 1493, 1720, 2355, 3240, 3565, 3805
Hpy8I	GTNNAC	8 cut(s)	629, 1031, 1493, 1720, 2355, 3240, 3565, 3805
Hpy99I	CGWCG	3 cut(s)	89, 413, 2975
HpyAV	CCTTC	9 cut(s)	28, 137, 1044, 1445, 1456, 2431, 2621, 3148, 3644
HpyCH4IV	ACGT	4 cut(s)	742, 1294, 2062, 2970
HpySE526I	ACGT	4 cut(s)	742, 1294, 2062, 2970
KpnI	GGTACC	1 cut(s)	3044
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	2 cut(s)	936, 3715
LguI	GCTCTTC	1 cut(s)	1642
MaeI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
MaeII	ACGT	4 cut(s)	742, 1294, 2062, 2970
MbiI	CCGCTC	3 cut(s)	200, 286, 303
MfeI	CAATTG	5 cut(s)	248, 2472, 2582, 2799, 3071
MflI	RGATCY	2 cut(s)	210, 1505
MhlI	GDGCHC	2 cut(s)	114, 2814
MlyI	GAGTC	6 cut(s)	50, 970, 2586, 3294, 3361, 3800
MmeI	TCCRAC	6 cut(s)	24, 43, 1483, 2296, 2979, 3700
Mph1103I	ATGCAT	2 cut(s)	368, 3787
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	2 cut(s)	2791, 3009
MslI	CAYNNNNRTG	2 cut(s)	1250, 2028
MspA1I	CMGCKG	5 cut(s)	646, 1304, 2048, 2138, 2927
MspCI	CTTAAG	1 cut(s)	1861
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
MunI	CAATTG	5 cut(s)	248, 2472, 2582, 2799, 3071
Mva1269I	GAATGC	2 cut(s)	1115, 2569
MvaI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
MvnI	CGCG	3 cut(s)	183, 2109, 2703
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	1981
NgoMIV	GCCGGC	1 cut(s)	49
NlaIV	GGNNCC	6 cut(s)	48, 573, 906, 2699, 2811, 3042
NmeAIII	GCCGAG	1 cut(s)	1903
NmuCI	GTSAC	3 cut(s)	385, 1844, 3278
NsbI	TGCGCA	1 cut(s)	704
NsiI	ATGCAT	2 cut(s)	368, 3787
NspI	RCATGY	4 cut(s)	754, 1978, 2602, 3250
NspV	TTCGAA	1 cut(s)	1483
OliI	CACNNNNGTG	1 cut(s)	1250
PaeI	GCATGC	1 cut(s)	1978
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	1 cut(s)	2598
PciSI	GCTCTTC	1 cut(s)	1642
PctI	GAATGC	2 cut(s)	1115, 2569
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	2 cut(s)	2791, 3009
PflFI	GACNNNGTC	1 cut(s)	3284
PflMI	CCANNNNNTGG	1 cut(s)	2433
PleI	GAGTC	6 cut(s)	49, 969, 2585, 3293, 3360, 3800
PpsI	GAGTC	6 cut(s)	49, 969, 2585, 3293, 3360, 3800
PpuMI	RGGWCCY	1 cut(s)	1321
PscI	ACATGT	1 cut(s)	2598
Psp5II	RGGWCCY	1 cut(s)	1321
Psp6I	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
PspFI	CCCAGC	2 cut(s)	1066, 3645
PspGI	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
PspN4I	GGNNCC	6 cut(s)	48, 573, 906, 2699, 2811, 3042
PspPI	GGNCC	4 cut(s)	695, 1321, 1490, 2698
PspPPI	RGGWCCY	1 cut(s)	1321
PstI	CTGCAG	3 cut(s)	1528, 1729, 2311
PsuI	RGATCY	2 cut(s)	210, 1505
PsyI	GACNNNGTC	1 cut(s)	3284
PvuII	CAGCTG	3 cut(s)	1304, 2138, 2927
RseI	CAYNNNNRTG	2 cut(s)	1250, 2028
SalI	GTCGAC	1 cut(s)	3803
SapI	GCTCTTC	1 cut(s)	1642
Sau96I	GGNCC	4 cut(s)	695, 1321, 1490, 2698
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	6 cut(s)	50, 970, 2586, 3294, 3361, 3800
ScrFI	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
SduI	GDGCHC	2 cut(s)	114, 2814
SfcI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
SfuI	TTCGAA	1 cut(s)	1483
SinI	GGWCC	4 cut(s)	695, 1321, 1490, 2698
SmiMI	CAYNNNNRTG	2 cut(s)	1250, 2028
SmlI	CTYRAG	5 cut(s)	632, 1861, 2230, 2723, 3808
SmoI	CTYRAG	5 cut(s)	632, 1861, 2230, 2723, 3808
SpeI	ACTAGT	1 cut(s)	3731
SphI	GCATGC	1 cut(s)	1978
SseBI	AGGCCT	1 cut(s)	761
SspI	AATATT	1 cut(s)	1916
SspMI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	5 cut(s)	264, 855, 1037, 1351, 2343
StyI	CCWWGG	2 cut(s)	1131, 1981
TaiI	ACGT	4 cut(s)	745, 1297, 2065, 2973
TaqI	TCGA	9 cut(s)	255, 1483, 2589, 2655, 2790, 2973, 3612, 3684, 3804
TatI	WGTACW	5 cut(s)	120, 512, 1952, 2732, 2952
TauI	GCSGC	1 cut(s)	505
TseFI	GTSAC	3 cut(s)	385, 1844, 3278
Tsp45I	GTSAC	3 cut(s)	385, 1844, 3278
TspGWI	ACGGA	5 cut(s)	564, 1256, 1583, 3500, 3556
Tth111I	GACNNNGTC	1 cut(s)	3284
Van91I	CCANNNNNTGG	1 cut(s)	2433
Vha464I	CTTAAG	1 cut(s)	1861
VpaK11BI	GGWCC	4 cut(s)	695, 1321, 1490, 2698
XagI	CCTNNNNNAGG	1 cut(s)	1313
XapI	RAATTY	2 cut(s)	1839, 2946
XceI	RCATGY	4 cut(s)	754, 1978, 2602, 3250
XmiI	GTMKAC	2 cut(s)	3239, 3804
XmnI	GAANNNNTTC	2 cut(s)	2791, 3009
XspI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	2 cut(s)	368, 3787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.