Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Forward (+)

34037243 .. 34043195

Gene Structure 5953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAGGGAAAAACAAACTTGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAGCTGGTGAATGCAATGATGCTACAAATGCCAAGGATTTAAACTCAGAACCAAGTTCAACTTGCGTGGAAGATGAAGAAATGGATGTTCCACAAATTGTAGAGGAGATTATTGAGATGTTACTCACTGGACTGAGAGATACGGACACTTTTGTACGTTGGTCTGCTGCAAAAGGTATTGGTCGCACTACTTCACGTCTTACAGCTGCCCTTTCAGAGGAGGTCCTATCATCTGTTTTGGAGCTGTTTTCGCCGGGCGAGGGTGATGGGTCATGGCATGGAGGTTGCTTAGCTTTGGCTGAATTGGCACGCAGAGGATTGCTCTTACCTGTCAGTCCACACAGTGTTGGATCTCATGTACGAGATGCTGCAGCTTATGTTTGTTGGGCTTTTGGCCGTGCATACTATCATACGGATATGAGAAATATATTGGATCAGCTTGCGCCACACCTTCTAACAGTGGCCTGCTATGACCGTGAGGTTAATTGTAGAAGAGCAGCAGCAGCAGCTTTCCAGGAAAATGTTGGGAGACAGGGTAGTTACCTTCATGGAATTGACATAGTGAACGCTGCAGACTATTTTTCACTTTCTTCACGAGCAAACTCTTATGTTCATGTTGCTGTCTCTATCGCTCAATATGAGGGATATCTTTGCTTAAGAGAACTTGCTGCCGAGGCCCTCTCTTCTCTTGTTAAATATGATCCTGAATATTTTGCAAACTATGCTTTGGAGAAAATAATTCCTTGTACTCTCTCATCTGATCTCACGCCTTTAGGTGGAGAGATTATTCGCTCAGCTGTTTCCCGCTTCATAGAATGTATATCTGTATCTTCTGTGTCGTTACCAGAAAAGATAAAGCGCAGTTTGCTTGATACTCTTAATGAGAACTTGAGACATCCTAATTCTCAGATTCAGGATGCAGCAGTTAAAGCTCTGAAGCACTTTGTGCAAGCATATCTAATTGCTGCAGATGTTGGAGGTGCTAGTATAACATCCAAGTACCTGGAACTGTTGACTGATCCAAATGTGGCTGTAAGAAGAGGATCAGCATTGGCAATAGGTGTTTTGCCCTGCAAACTTCTTTACAATAGTCAGAATGCTGTGAGTTTGAGACCGGTCAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

394

Amino Acids

42.58

Weight (kDa)

5.55

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD_2nd	PF25767	22 - 129	2.2e-39	Tubulin-specific chaperone D-like, ARM repeats
ARM_TBCD_2nd	PF25767	131 - 203	1.2e-36	Tubulin-specific chaperone D-like, ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	859
AclI	AACGTT	1 cut(s)	1177
AclWI	GGATC	5 cut(s)	412, 495, 749, 1067, 1105
AcoI	YGGCCR	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	1010
AdeI	CACNNNGTG	2 cut(s)	398, 1000
AfaI	GTAC	4 cut(s)	210, 414, 802, 1055
AfiI	CCNNNNNNNGG	3 cut(s)	271, 314, 830
AflII	CTTAAG	1 cut(s)	709
AgeI	ACCGGT	1 cut(s)	1168
AgsI	TTSAA	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	567, 1056
AluBI	AGCT	9 cut(s)	59, 260, 298, 347, 428, 493, 563, 851, 986
AluI	AGCT	9 cut(s)	59, 260, 298, 347, 428, 493, 563, 851, 986
Alw26I	GTCTC	4 cut(s)	577, 682, 940, 1159
AlwI	GGATC	5 cut(s)	412, 495, 749, 1067, 1105
AoxI	GGCC	3 cut(s)	448, 516, 729
AsiGI	ACCGGT	1 cut(s)	1168
AspLEI	GCGC	2 cut(s)	499, 915
AspS9I	GGNCC	2 cut(s)	277, 730
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	74, 329
AvaII	GGWCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	648
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	2 cut(s)	569, 1058
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	4 cut(s)	577, 682, 940, 1159
BfaI	CTAG	1 cut(s)	1038
BfmI	CTRYAG	3 cut(s)	423, 624, 1020
BfrI	CTTAAG	1 cut(s)	709
BlpI	GCTNAGC	2 cut(s)	343, 847
Bme1390I	CCNGG	3 cut(s)	309, 569, 1058
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	277, 730
BmrFI	CCNGG	3 cut(s)	309, 569, 1058
BmsI	GCATC	4 cut(s)	56, 64, 409, 961
BplI	GAGNNNNNCTC	4 cut(s)	360, 392, 719, 751
Bpu1102I	GCTNAGC	2 cut(s)	343, 847
BpuEI	CTTGAG	1 cut(s)	964
BpuMI	CCSGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	1159
BsaJI	CCNNGG	2 cut(s)	87, 726
BsaWI	WCCGGW	1 cut(s)	1168
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 314, 830
Bse118I	RCCGGY	1 cut(s)	1168
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	569, 1058
BseDI	CCNNGG	2 cut(s)	87, 726
BseGI	GGATG	4 cut(s)	145, 949, 976, 1046
BseLI	CCNNNNNNNGG	3 cut(s)	271, 314, 830
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	4 cut(s)	114, 179, 861, 974
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	173, 287
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	3 cut(s)	450, 518, 731
BshTI	ACCGGT	1 cut(s)	1168
BsiSI	CCGG	2 cut(s)	308, 1169
BslI	CCNNNNNNNGG	3 cut(s)	271, 314, 830
BsmAI	GTCTC	4 cut(s)	577, 682, 940, 1159
BsmI	GAATGC	2 cut(s)	71, 1156
BsnI	GGCC	3 cut(s)	450, 518, 731
Bso31I	GGTCTC	1 cut(s)	1159
Bsp143I	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
Bsp1720I	GCTNAGC	2 cut(s)	343, 847
BspACI	CCGC	1 cut(s)	859
BspANI	GGCC	3 cut(s)	450, 518, 731
BspCNI	CTCAG	4 cut(s)	113, 180, 860, 973
BspMAI	CTGCAG	3 cut(s)	427, 628, 1024
BspPI	GGATC	5 cut(s)	412, 495, 749, 1067, 1105
BspQI	GCTCTTC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	1159
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	1168
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	1168
BssECI	CCNNGG	2 cut(s)	87, 726
BssMI	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	569, 1058
Bst4CI	ACNGT	4 cut(s)	398, 514, 530, 1065
Bst6I	CTCTTC	3 cut(s)	541, 742, 1087
BstAFI	CTTAAG	1 cut(s)	709
BstAPI	GCANNNNNTGC	2 cut(s)	776, 1000
BstC8I	GCNNGC	4 cut(s)	364, 495, 520, 1005
BstDEI	CTNAG	5 cut(s)	100, 188, 343, 847, 960
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	145, 949, 976, 1046
BstHHI	GCGC	2 cut(s)	499, 915
BstKTI	GATC	6 cut(s)	407, 490, 757, 817, 1075, 1100
BstMAI	GTCTC	4 cut(s)	577, 682, 940, 1159
BstMBI	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
BstNI	CCWGG	2 cut(s)	569, 1058
BstSCI	CCNGG	3 cut(s)	307, 567, 1056
BstSFI	CTRYAG	3 cut(s)	423, 624, 1020
BstX2I	RGATCY	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	3 cut(s)	450, 518, 731
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	145, 949, 976, 1046
BtsIMutI	CAGTG	3 cut(s)	180, 403, 519
Cac8I	GCNNGC	4 cut(s)	364, 495, 520, 1005
CfoI	GCGC	2 cut(s)	499, 915
Cfr10I	RCCGGY	1 cut(s)	1168
Cfr13I	GGNCC	2 cut(s)	277, 730
Csp6I	GTAC	4 cut(s)	209, 413, 801, 1054
CspAI	ACCGGT	1 cut(s)	1168
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	5 cut(s)	327, 332, 410, 602, 668
CviQI	GTAC	4 cut(s)	209, 413, 801, 1054
DdeI	CTNAG	5 cut(s)	100, 188, 343, 847, 960
DpnI	GATC	6 cut(s)	406, 489, 756, 816, 1074, 1099
DpnII	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
DraI	TTTAAA	1 cut(s)	96
DraIII	CACNNNGTG	2 cut(s)	398, 1000
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	541, 742, 1087
EarI	CTCTTC	3 cut(s)	541, 742, 1087
Eco130I	CCWWGG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	1159
Eco32I	GATATC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	1010
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	277, 730
EcoRII	CCWGG	2 cut(s)	567, 1056
EcoRV	GATATC	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	330, 335, 413, 605, 671
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	5 cut(s)	326, 331, 409, 601, 667
FauI	CCCGC	1 cut(s)	866
FokI	GGATG	4 cut(s)	152, 936, 983, 1033
FspBI	CTAG	1 cut(s)	1038
GlaI	GCGC	2 cut(s)	498, 914
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	450, 518, 731
HapII	CCGG	2 cut(s)	308, 1169
HhaI	GCGC	2 cut(s)	499, 915
Hin1II	CATG	5 cut(s)	330, 335, 413, 605, 671
Hin6I	GCGC	2 cut(s)	497, 913
HinP1I	GCGC	2 cut(s)	497, 913
HincII	GTYRAC	1 cut(s)	1068
HindII	GTYRAC	1 cut(s)	1068
HinfI	GANTC	1 cut(s)	964
HpaII	CCGG	2 cut(s)	308, 1169
HphI	GGTGA	2 cut(s)	74, 329
Hpy166II	GTNNAC	3 cut(s)	392, 619, 1068
Hpy188I	TCNGA	6 cut(s)	103, 271, 814, 963, 990, 1149
Hpy188III	TCNNGA	3 cut(s)	648, 758, 968
Hpy8I	GTNNAC	3 cut(s)	392, 619, 1068
HpyAV	CCTTC	2 cut(s)	515, 608
HpyCH4III	ACNGT	4 cut(s)	398, 514, 530, 1065
HpyCH4IV	ACGT	3 cut(s)	211, 250, 1177
HpyF3I	CTNAG	5 cut(s)	100, 188, 343, 847, 960
HpySE526I	ACGT	3 cut(s)	211, 250, 1177
Hsp92II	CATG	5 cut(s)	330, 335, 413, 605, 671
HspAI	GCGC	2 cut(s)	497, 913
Kzo9I	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	4 cut(s)	56, 64, 409, 961
MaeI	CTAG	1 cut(s)	1038
MaeII	ACGT	3 cut(s)	211, 250, 1177
MaeIII	GTNAC	3 cut(s)	174, 593, 894
MalI	GATC	6 cut(s)	406, 489, 756, 816, 1074, 1099
MboI	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
MboII	GAAGA	7 cut(s)	137, 143, 558, 636, 729, 876, 1104
MflI	RGATCY	1 cut(s)	404
MluCI	AATT	7 cut(s)	150, 356, 538, 606, 792, 955, 1014
MmeI	TCCRAC	2 cut(s)	382, 1009
MseI	TTAA	6 cut(s)	95, 537, 710, 747, 933, 981
MspA1I	CMGCKG	2 cut(s)	260, 851
MspCI	CTTAAG	1 cut(s)	709
MspI	CCGG	2 cut(s)	308, 1169
MspR9I	CCNGG	3 cut(s)	309, 569, 1058
Mva1269I	GAATGC	2 cut(s)	71, 1156
MvaI	CCWGG	2 cut(s)	569, 1058
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
NlaIII	CATG	5 cut(s)	330, 335, 413, 605, 671
NmeAIII	GCCGAG	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	541
PctI	GAATGC	2 cut(s)	71, 1156
PfeI	GAWTC	1 cut(s)	964
PfoI	TCCNGGA	1 cut(s)	567
PinAI	ACCGGT	1 cut(s)	1168
PpuMI	RGGWCCY	1 cut(s)	277
Psp1406I	AACGTT	1 cut(s)	1177
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	567, 1056
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	567, 1056
PspPI	GGNCC	2 cut(s)	277, 730
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	3 cut(s)	427, 628, 1024
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	2 cut(s)	260, 851
RsaI	GTAC	4 cut(s)	210, 414, 802, 1055
RsaNI	GTAC	4 cut(s)	209, 413, 801, 1054
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	6 cut(s)	95, 537, 710, 747, 933, 981
Sau3AI	GATC	6 cut(s)	404, 487, 754, 814, 1072, 1097
Sau96I	GGNCC	2 cut(s)	277, 730
ScrFI	CCNGG	3 cut(s)	309, 569, 1058
SfaNI	GCATC	4 cut(s)	56, 64, 409, 961
SfcI	CTRYAG	3 cut(s)	423, 624, 1020
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	709, 943
SmoI	CTYRAG	2 cut(s)	709, 943
Sse9I	AATT	7 cut(s)	150, 356, 538, 606, 792, 955, 1014
SsiI	CCGC	1 cut(s)	859
SspI	AATATT	1 cut(s)	764
SspMI	CTAG	1 cut(s)	1038
StyD4I	CCNGG	3 cut(s)	307, 567, 1056
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	398, 514, 530, 1065
TaiI	ACGT	3 cut(s)	214, 253, 1180
TasI	AATT	7 cut(s)	150, 356, 538, 606, 792, 955, 1014
TatI	WGTACW	1 cut(s)	800
TfiI	GAWTC	1 cut(s)	964
Tru1I	TTAA	6 cut(s)	95, 537, 710, 747, 933, 981
Tru9I	TTAA	6 cut(s)	95, 537, 710, 747, 933, 981
TscAI	CASTG	3 cut(s)	187, 403, 519
TspDTI	ATGAA	4 cut(s)	144, 590, 656, 853
TspGWI	ACGGA	2 cut(s)	212, 482
TspRI	CASTG	3 cut(s)	187, 403, 519
Vha464I	CTTAAG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.