Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 12834

Gene Structure 12834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4135 bp

atggcaggcttagccccaaagcatcagaagcagaaggaggagttggattcggcagttgcagttggattgggtgaagaagaagacgacgagtacggcgcaaaggaggcagtgctccaaaagtactttcttcaagaatggaagctcgtcaagtccatcttagacgacatcgtttcgcacaagcgcgtctccgatacctccgctccccacaagatccgatccattatggacaagtatcaagaacagggtcaattggtagagccttacctggagagcattgtttctccgctcatgtttatcgtccgctctaagacagttgaattaggagtggcttcaaacaagattcttcaagtaattaagcctatatgcatcattatctactctctggtcacagtttgtgggtacaaggccgtcgtcaggttcttcccgcatcaggtttccgacttggaacttgctgtgtccctcttggagaaatgccatcacacaacttcagtatcatcgttgcggcaggaaagtacaggagagatggaggccaaatgtgtgatacttttgtggctctcaatacttgtgttggttccgtttgatatctccacggttgatactagcattgcaaacaacagcaatcttggtaaacttgagccagctccgctggtattgagaataacagggatatctaaggattacctttcaaatgctggtcctatgcgcactatagctgctttgctgctctcaaagcttctaacacgtccagacatgccaaaggccttttccagcttcgttgaatggacgcatgaagtcctatcttctctcacagatgatgtcatgaatcactttcgcttacttggagctttagaagccctggctgctatattcaaggctggtgggcggaaactcttgcttgatgtggttcctattgtttgggatgacatctcattgttgatcaagtctagctatgcagctaagagtccattgcttcgcaagtatctgatgaaattaactcagaggatagggcttacttgcctccctcatcgttcaccttcctggcgctatgtgggaaaaacaaactcgctgggagagaacatttctttgtctgcatcagggaaagctggcgaatgcaatgatgctacaaatgccaaggatttaaactcagaaccaagttcaacttgcgtggaagatgaagaaatggatgttccagaaattgtagaggagattattgagatgttactcactggactgagagatacggacactgttgtgcgttggtctgctgcaaaaggtattggtcgcactacttcacgtcttacagctgccctttcagaggaggtcctatcatctgttttggagctgttttcgccaggcgagggtgatgggtcatggcatggaggttgcttagctttggctgaattggcacgcagaggattgctcttacctgtcagccttcctaaagttgtacctgttgttgtgaaggcgctacattatgatattcgaagaggtccacacagtgttggatctcatgtacgagatgctgcagcttatgtttgttgggcttttggccgtgcatactatcatacggatatgagaaatatattggatcagcttgcgccacatcttctaacagtggcctgctatgaccgtgaggttaattgtagaagagcagcagcagcagcttttcaggaaaatgttgggagacagggtagttaccctcatggaattgacatagtgaacactgcagactatttttcactttcttcacgagcaaactcttatgttcatgttgctgtctctatcgctcaatatgagggatatctttatccctttgtggatgagctactgtataacaaaatttgtcactgggaaaaaggcttaagagaacttgctgccgaggctctctcttctcttgttaaatatgatcctgaatattttgcaaactatgctttggagaaaataattccttgtactctctcatctgatctgtgcatgcgccatggagcgacactggcaactggagaacttgttttagcactacatcaatgtgattatgctctttccgctgataaacaaaaacatgttgctggtgttgtacctgctattgcgaaagcacgcctttatcgcgggaaaggtggagagattatgcgctcagctgtttcccgcttcatagaatgtatatctgtatcttctgtgtcgttaccagaaaagataaagcgcagtttgcttgatactcttaatgagaacttgagacatcctaattctcagattcaggatgcagcagttaaagctctgaagcactttgtgcaagcatatctaattgctgcagatgttggaggtgctagtataacatcaaagtacctggaactgttgactgatccaaatgtggctgtaagaagaggatcagcattggcaataggtgttttgccctgcaaacttcttgccaataggtggaaggatgtgcttctgaagctttgtaactcttgtgcaattgaggacaaccctgatgatagagacgcggaagcacgagtaaatgcagtcaaagggcttgtttcagtatgtgaagcattaactcaggaaaaggagcattctggagtccaactgatcgaggatgacatgtctttgttccttcttatcaaggatagaataatgacagctttattgaaagctctcgatgactattctgtggataacagaggtgatgtgggttcttgggtccgtgaggctgctatgaatggccttgagagatgtacatatatcctgtgcaagagagattctattggtctgagtggaagatcaggtggaatcgattctgcaattgagctggagcccaatgctgacaatctccagttacatttgttgtttgatgcaaatcttgctaccagtgtagttgggggaatatgtaagcaagctgtagagaagatggataaactgagagaagcagctgcaaaggtgctacagagaattttgtacaataatgtagcttacgtcgaacacataccacacaggaaaaagttggaagaaattgttcctaatgaagctgatttaaagtggggggtaccaaccttttcgtatcctcgttttgtgcaattgcttcaatttggctgttatagcagatcagtggtatctgggttagttatctctattggtgggttgcaagattctttgaggaaggcatcactcacagcattgttagagtatcttcaagtggtaaaaagtgaagaccagaatgaaaagtccagagagtatttgctgtctactgacatgctttgggttcttgaacactataggagatgtgacagagtcattgtacctttattgaagaccatcgagattcttttcagcaaaaggatattcttgactatggagagtcaaacagttgttttctgtgctggtgctttggattctctggaagttgaattaaaaggatcaaaggacttttccaagctatatgcgggcattgcaatacttggatatatagcttcagtttcagattccataaatagtcgggctttctctcagcttctccgtttcctaggccatcgttaccccaagatacggaaagcttctgctgaacaagtttaccttgttctcttgcaaaatgagggtctcgtggctgaagacaagatcgacaaagcgcttgaaattatttcagaaacctgctgggaaggtgatactgaagcagcaaagctccaacggttcgagttatatgatatggctggtcttgacacagatcagattcgtaagactagtaacagactcggtgctaattccgactccgcgccaaaggacgccacgccgttcacgatgacgactacgtcagccacgaactattcccccacccaagagacccaattcgcaaaatggcaggcggtccaaggcaactcggaagaccacgacggttcttgcgccgacgacggtgactatgagggaggatacggaggaggtcagtctaactcggattacataaaaggttttgaaattttgcggtggggctccgatgaggttgatggcgctggttttttctcgcctgagatcgtaggggtcgaagtcatggactttggtagtagattggaggtggcaaattggagatggcagctcaagttttcccatttcttgtgtgttaggagggtcaacttagccgacttcctcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

1378

Amino Acids

152.39

Weight (kDa)

5.77

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3799
Acc16I	TGCGCA	1 cut(s)	704
Acc36I	ACCTGC	2 cut(s)	2089, 3650
Acc65I	GGTACC	1 cut(s)	3040
AccB1I	GGYRCC	1 cut(s)	3040
AccB7I	CCANNNNNTGG	1 cut(s)	2433
AccBSI	CCGCTC	3 cut(s)	200, 286, 303
AccI	GTMKAC	1 cut(s)	3239
AccII	CGCG	4 cut(s)	183, 2109, 2501, 3764
AclWI	GGATC	8 cut(s)	205, 210, 1513, 1596, 1901, 2354, 2392, 3418
AcoI	YGGCCR	1 cut(s)	1549
AcsI	RAATTY	3 cut(s)	1839, 2946, 3963
AcuI	CTGAAG	6 cut(s)	471, 2297, 2471, 3450, 3621, 3681
AcyI	GRCGYC	1 cut(s)	3774
AdeI	CACNNNGTG	2 cut(s)	1499, 2287
AfeI	AGCGCT	1 cut(s)	3621
AfiI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
AflII	CTTAAG	1 cut(s)	1861
AflIII	ACRYGT	3 cut(s)	740, 2062, 2598
AhlI	ACTAGT	1 cut(s)	3731
AjiI	CACGTC	2 cut(s)	743, 1295
AjnI	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
AjuI	GAANNNNNNNTTGG	6 cut(s)	26, 58, 108, 140, 748, 780
AleI	CACNNNNGTG	1 cut(s)	1250
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	7 cut(s)	190, 1678, 1783, 2227, 2490, 3596, 3824
AlwI	GGATC	8 cut(s)	205, 210, 1513, 1596, 1901, 2354, 2392, 3418
Aor51HI	AGCGCT	1 cut(s)	3621
AoxI	GGCC	7 cut(s)	405, 528, 759, 1549, 1617, 2719, 3520
ApoI	RAATTY	3 cut(s)	1839, 2946, 3963
ArsI	GACNNNNNNTTYG	2 cut(s)	3574, 3606
Asp700I	GAANNNNTTC	2 cut(s)	2791, 3009
Asp718I	GGTACC	1 cut(s)	3040
AspA2I	CCTAGG	1 cut(s)	3517
AspS9I	GGNCC	5 cut(s)	695, 1321, 1490, 2698, 3856
AsuHPI	GGTGA	6 cut(s)	83, 1023, 1373, 2693, 3665, 3914
AsuII	TTCGAA	1 cut(s)	1483
AvaII	GGWCC	5 cut(s)	695, 1321, 1490, 2698, 3856
AvrII	CCTAGG	1 cut(s)	3517
BaeI	ACNNNNGTAYC	4 cut(s)	474, 507, 533, 566
BanI	GGYRCC	1 cut(s)	3040
BanII	GRGCYC	2 cut(s)	2814, 3980
BauI	CACGAG	3 cut(s)	1749, 2508, 3593
BbsI	GAAGAC	5 cut(s)	87, 3210, 3311, 3609, 3879
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	9 cut(s)	161, 483, 517, 1358, 2899, 3317, 3531, 3986, 4068
BceAI	ACGGC	4 cut(s)	109, 392, 1536, 3766
BciT130I	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BciVI	GTATCC	2 cut(s)	3066, 3911
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	7 cut(s)	190, 1678, 1783, 2227, 2490, 3596, 3824
BcuI	ACTAGT	1 cut(s)	3731
BfaI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
BfmI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
BfoI	RGCGCY	4 cut(s)	1045, 1469, 3623, 3999
BfrI	CTTAAG	1 cut(s)	1861
BfuAI	ACCTGC	2 cut(s)	2089, 3650
BfuI	GTATCC	2 cut(s)	3066, 3911
BlnI	CCTAGG	1 cut(s)	3517
BlpI	GCTNAGC	3 cut(s)	10, 1387, 2134
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
Bme18I	GGWCC	5 cut(s)	695, 1321, 1490, 2698, 3856
BmgBI	CACGTC	2 cut(s)	743, 1295
BmgT120I	GGNCC	5 cut(s)	695, 1321, 1490, 2698, 3856
BmiI	GGNNCC	6 cut(s)	573, 906, 2699, 2811, 3042, 3979
BmrFI	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
BmrI	ACTGGG	1 cut(s)	1858
BmsI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1510, 2248, 2839, 3167
BmuI	ACTGGG	1 cut(s)	1858
BpiI	GAAGAC	5 cut(s)	87, 3210, 3311, 3609, 3879
BplI	GAGNNNNNCTC	4 cut(s)	1404, 1436, 1871, 1903
BpmI	CTGGAG	5 cut(s)	287, 2022, 2595, 2813, 2828
Bpu1102I	GCTNAGC	3 cut(s)	10, 1387, 2134
Bpu14I	TTCGAA	1 cut(s)	1483
BpuEI	CTTGAG	4 cut(s)	653, 2251, 2744, 4067
Bsa29I	ATCGAT	1 cut(s)	2790
BsaBI	GATNNNNATC	1 cut(s)	2853
BsaHI	GRCGYC	1 cut(s)	3774
BsaI	GGTCTC	2 cut(s)	3596, 3824
BsaJI	CCNNGG	7 cut(s)	588, 855, 1131, 1878, 1981, 3517, 3859
BsaXI	ACNNNNNCTCC	6 cut(s)	184, 214, 1675, 1705, 1995, 2025
Bsc4I	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
Bse1I	ACTGG	6 cut(s)	1231, 1853, 1998, 2005, 2830, 2865
Bse3DI	GCAATG	4 cut(s)	603, 965, 1120, 3441
Bse8I	GATNNNNATC	1 cut(s)	2853
BseBI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BseCI	ATCGAT	1 cut(s)	2790
BseDI	CCNNGG	7 cut(s)	588, 855, 1131, 1878, 1981, 3517, 3859
BseGI	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BseJI	GATNNNNATC	1 cut(s)	2853
BseLI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
BseMI	GCAATG	4 cut(s)	603, 965, 1120, 3441
BseNI	ACTGG	6 cut(s)	1231, 1853, 1998, 2005, 2830, 2865
BseRI	GAGGAG	4 cut(s)	53, 1217, 1331, 3939
BseYI	CCCAGC	2 cut(s)	1066, 3645
Bsh1236I	CGCG	4 cut(s)	183, 2109, 2501, 3764
BshFI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BshNI	GGYRCC	1 cut(s)	3040
BshVI	ATCGAT	1 cut(s)	2790
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1358, 2433, 3540
BsmAI	GTCTC	7 cut(s)	190, 1678, 1783, 2227, 2490, 3596, 3824
BsmBI	CGTCTC	2 cut(s)	190, 2490
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	2 cut(s)	1115, 2569
BsnI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
Bso31I	GGTCTC	2 cut(s)	3596, 3824
Bsp119I	TTCGAA	1 cut(s)	1483
Bsp1286I	GDGCHC	3 cut(s)	114, 2814, 3980
Bsp1407I	TGTACA	2 cut(s)	2732, 2952
Bsp1720I	GCTNAGC	3 cut(s)	10, 1387, 2134
Bsp19I	CCATGG	1 cut(s)	1981
BspANI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BspDI	ATCGAT	1 cut(s)	2790
BspFNI	CGCG	4 cut(s)	183, 2109, 2501, 3764
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	6 cut(s)	573, 906, 2699, 2811, 3042, 3979
BspMAI	CTGCAG	3 cut(s)	1528, 1729, 2311
BspMI	ACCTGC	2 cut(s)	2089, 3650
BspPI	GGATC	8 cut(s)	205, 210, 1513, 1596, 1901, 2354, 2392, 3418
BspQI	GCTCTTC	1 cut(s)	1642
BspT104I	TTCGAA	1 cut(s)	1483
BspT107I	GGYRCC	1 cut(s)	3040
BspTI	CTTAAG	1 cut(s)	1861
BspTNI	GGTCTC	2 cut(s)	3596, 3824
BsrBI	CCGCTC	3 cut(s)	200, 286, 303
BsrDI	GCAATG	4 cut(s)	603, 965, 1120, 3441
BsrGI	TGTACA	2 cut(s)	2732, 2952
BsrI	ACTGG	6 cut(s)	1231, 1853, 1998, 2005, 2830, 2865
BssECI	CCNNGG	7 cut(s)	588, 855, 1131, 1878, 1981, 3517, 3859
BssNI	GRCGYC	1 cut(s)	3774
BssSI	CACGAG	3 cut(s)	1749, 2508, 3593
BssT1I	CCWWGG	4 cut(s)	1131, 1981, 3517, 3859
Bst2BI	CACGAG	3 cut(s)	1749, 2508, 3593
Bst2UI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
Bst6I	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
BstACI	GRCGYC	1 cut(s)	3774
BstAFI	CTTAAG	1 cut(s)	1861
BstAPI	GCANNNNNTGC	3 cut(s)	1928, 2287, 2858
BstAUI	TGTACA	2 cut(s)	2732, 2952
BstBI	TTCGAA	1 cut(s)	1483
BstDSI	CCRYGG	2 cut(s)	588, 1981
BstENI	CCTNNNNNAGG	1 cut(s)	1313
BstF5I	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BstFNI	CGCG	4 cut(s)	183, 2109, 2501, 3764
BstH2I	RGCGCY	4 cut(s)	1045, 1469, 3623, 3999
BstMAI	GTCTC	7 cut(s)	190, 1678, 1783, 2227, 2490, 3596, 3824
BstNI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
BstNSI	RCATGY	5 cut(s)	754, 1978, 2066, 2602, 3250
BstSCI	CCNGG	5 cut(s)	264, 855, 1037, 1351, 2343
BstSFI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
BstUI	CGCG	4 cut(s)	183, 2109, 2501, 3764
BstV2I	GAAGAC	5 cut(s)	87, 3210, 3311, 3609, 3879
BstX2I	RGATCY	2 cut(s)	210, 1505
BstYI	RGATCY	2 cut(s)	210, 1505
Bsu15I	ATCGAT	1 cut(s)	2790
BsuI	GTATCC	2 cut(s)	3066, 3911
BsuRI	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
BsuTUI	ATCGAT	1 cut(s)	2790
BtgI	CCRYGG	2 cut(s)	588, 1981
BtrI	CACGTC	2 cut(s)	743, 1295
BtsCI	GGATG	7 cut(s)	925, 1189, 1825, 2236, 2263, 2446, 2599
BtsI	GCAGTG	2 cut(s)	114, 1722
BveI	ACCTGC	2 cut(s)	2089, 3650
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	5 cut(s)	695, 1321, 1490, 2698, 3856
ClaI	ATCGAT	1 cut(s)	2790
CseI	GACGC	4 cut(s)	172, 793, 2507, 3782
CspCI	CAANNNNNGTGG	4 cut(s)	859, 894, 1146, 1181
DraI	TTTAAA	2 cut(s)	1140, 3030
DraIII	CACNNNGTG	2 cut(s)	1499, 2287
DrdI	GACNNNNNNGTC	1 cut(s)	3799
DseDI	GACNNNNNNGTC	1 cut(s)	3799
EaeI	YGGCCR	1 cut(s)	1549
Eam1104I	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
EarI	CTCTTC	4 cut(s)	1480, 1642, 1894, 2374
EciI	GGCGGA	1 cut(s)	898
Eco130I	CCWWGG	4 cut(s)	1131, 1981, 3517, 3859
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	2 cut(s)	2814, 3980
Eco31I	GGTCTC	2 cut(s)	3596, 3824
Eco32I	GATATC	3 cut(s)	583, 669, 1802
Eco47I	GGWCC	5 cut(s)	695, 1321, 1490, 2698, 3856
Eco47III	AGCGCT	1 cut(s)	3621
Eco57I	CTGAAG	6 cut(s)	471, 2297, 2471, 3450, 3621, 3681
EcoNI	CCTNNNNNAGG	1 cut(s)	1313
EcoO109I	RGGNCCY	1 cut(s)	1321
EcoRII	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
EcoRV	GATATC	3 cut(s)	583, 669, 1802
EcoT14I	CCWWGG	4 cut(s)	1131, 1981, 3517, 3859
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	2814, 3980
ErhI	CCWWGG	4 cut(s)	1131, 1981, 3517, 3859
Esp3I	CGTCTC	2 cut(s)	190, 2490
FalI	AAGNNNNNCTT	8 cut(s)	140, 172, 1144, 1176, 2085, 2117, 3552, 3584
FaqI	GGGAC	1 cut(s)	442
FauI	CCCGC	4 cut(s)	432, 2102, 2153, 3430
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	3239
FokI	GGATG	7 cut(s)	932, 1196, 1832, 2223, 2270, 2453, 2606
FriOI	GRGCYC	2 cut(s)	2814, 3980
FspAI	RTGCGCAY	1 cut(s)	704
FspBI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
FspI	TGCGCA	1 cut(s)	704
GsaI	CCCAGC	2 cut(s)	1070, 3649
GsuI	CTGGAG	5 cut(s)	287, 2022, 2595, 2813, 2828
HaeII	RGCGCY	4 cut(s)	1045, 1469, 3623, 3999
HaeIII	GGCC	7 cut(s)	407, 530, 761, 1551, 1619, 2721, 3522
HgaI	GACGC	4 cut(s)	172, 793, 2507, 3782
Hin1I	GRCGYC	1 cut(s)	3774
HincII	GTYRAC	2 cut(s)	2355, 4117
HindII	GTYRAC	2 cut(s)	2355, 4117
HindIII	AAGCTT	3 cut(s)	731, 2453, 3546
HphI	GGTGA	6 cut(s)	83, 1023, 1373, 2693, 3665, 3914
Hpy166II	GTNNAC	9 cut(s)	629, 1031, 1493, 1720, 2355, 3240, 3565, 3786, 4117
Hpy8I	GTNNAC	9 cut(s)	629, 1031, 1493, 1720, 2355, 3240, 3565, 3786, 4117
Hpy99I	CGWCG	6 cut(s)	89, 413, 2975, 3884, 3899, 3902
HpyAV	CCTTC	8 cut(s)	28, 1044, 1445, 1456, 2431, 2621, 3148, 3644
HpyCH4IV	ACGT	4 cut(s)	742, 1294, 2970, 3800
HpySE526I	ACGT	4 cut(s)	742, 1294, 2970, 3800
Hsp92I	GRCGYC	1 cut(s)	3774
KpnI	GGTACC	1 cut(s)	3044
Ksp22I	TGATCA	1 cut(s)	936
LguI	GCTCTTC	1 cut(s)	1642
LweI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1510, 2248, 2839, 3167
MaeI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
MaeII	ACGT	4 cut(s)	742, 1294, 2970, 3800
MbiI	CCGCTC	3 cut(s)	200, 286, 303
MfeI	CAATTG	4 cut(s)	248, 2472, 2799, 3071
MflI	RGATCY	2 cut(s)	210, 1505
MhlI	GDGCHC	3 cut(s)	114, 2814, 3980
MlyI	GAGTC	6 cut(s)	970, 2586, 3294, 3361, 3735, 3752
MmeI	TCCRAC	9 cut(s)	24, 43, 462, 1483, 2296, 2605, 2979, 3700, 3780
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	2 cut(s)	2791, 3009
MslI	CAYNNNNRTG	2 cut(s)	1250, 2028
MspA1I	CMGCKG	5 cut(s)	646, 1304, 2048, 2138, 2927
MspCI	CTTAAG	1 cut(s)	1861
MspR9I	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
MunI	CAATTG	4 cut(s)	248, 2472, 2799, 3071
Mva1269I	GAATGC	2 cut(s)	1115, 2569
MvaI	CCWGG	5 cut(s)	266, 857, 1039, 1353, 2345
MvnI	CGCG	4 cut(s)	183, 2109, 2501, 3764
NcoI	CCATGG	1 cut(s)	1981
NlaIV	GGNNCC	6 cut(s)	573, 906, 2699, 2811, 3042, 3979
NmeAIII	GCCGAG	1 cut(s)	1903
NmuCI	GTSAC	4 cut(s)	385, 1844, 3278, 3902
NsbI	TGCGCA	1 cut(s)	704
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	5 cut(s)	754, 1978, 2066, 2602, 3250
NspV	TTCGAA	1 cut(s)	1483
OliI	CACNNNNGTG	1 cut(s)	1250
PaeI	GCATGC	1 cut(s)	1978
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	2 cut(s)	2062, 2598
PciSI	GCTCTTC	1 cut(s)	1642
PcsI	WCGNNNNNNNCGW	3 cut(s)	3785, 3806, 4026
PctI	GAATGC	2 cut(s)	1115, 2569
PdmI	GAANNNNTTC	2 cut(s)	2791, 3009
PflFI	GACNNNGTC	2 cut(s)	3284, 3799
PflMI	CCANNNNNTGG	1 cut(s)	2433
PleI	GAGTC	6 cut(s)	969, 2585, 3293, 3360, 3735, 3752
PpsI	GAGTC	6 cut(s)	969, 2585, 3293, 3360, 3735, 3752
PpuMI	RGGWCCY	1 cut(s)	1321
PscI	ACATGT	2 cut(s)	2062, 2598
Psp5II	RGGWCCY	1 cut(s)	1321
Psp6I	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
PspFI	CCCAGC	2 cut(s)	1066, 3645
PspGI	CCWGG	5 cut(s)	264, 855, 1037, 1351, 2343
PspN4I	GGNNCC	6 cut(s)	573, 906, 2699, 2811, 3042, 3979
PspPI	GGNCC	5 cut(s)	695, 1321, 1490, 2698, 3856
PspPPI	RGGWCCY	1 cut(s)	1321
PstI	CTGCAG	3 cut(s)	1528, 1729, 2311
PsuI	RGATCY	2 cut(s)	210, 1505
PsyI	GACNNNGTC	2 cut(s)	3284, 3799
PvuII	CAGCTG	3 cut(s)	1304, 2138, 2927
RseI	CAYNNNNRTG	2 cut(s)	1250, 2028
SapI	GCTCTTC	1 cut(s)	1642
Sau96I	GGNCC	5 cut(s)	695, 1321, 1490, 2698, 3856
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	6 cut(s)	970, 2586, 3294, 3361, 3735, 3752
ScrFI	CCNGG	5 cut(s)	266, 857, 1039, 1353, 2345
SduI	GDGCHC	3 cut(s)	114, 2814, 3980
SfaNI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1510, 2248, 2839, 3167
SfcI	CTRYAG	7 cut(s)	708, 1524, 1725, 2307, 2895, 2939, 3268
SfuI	TTCGAA	1 cut(s)	1483
SinI	GGWCC	5 cut(s)	695, 1321, 1490, 2698, 3856
SmiMI	CAYNNNNRTG	2 cut(s)	1250, 2028
SmlI	CTYRAG	5 cut(s)	632, 1861, 2230, 2723, 4082
SmoI	CTYRAG	5 cut(s)	632, 1861, 2230, 2723, 4082
SpeI	ACTAGT	1 cut(s)	3731
SphI	GCATGC	1 cut(s)	1978
SseBI	AGGCCT	1 cut(s)	761
SspI	AATATT	1 cut(s)	1916
SspMI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	5 cut(s)	264, 855, 1037, 1351, 2343
StyI	CCWWGG	4 cut(s)	1131, 1981, 3517, 3859
TaiI	ACGT	4 cut(s)	745, 1297, 2973, 3803
TaqI	TCGA	9 cut(s)	1483, 2589, 2655, 2790, 2973, 3312, 3612, 3684, 4029
TatI	WGTACW	5 cut(s)	120, 512, 1952, 2732, 2952
TauI	GCSGC	1 cut(s)	505
TseFI	GTSAC	4 cut(s)	385, 1844, 3278, 3902
Tsp45I	GTSAC	4 cut(s)	385, 1844, 3278, 3902
TspDTI	ATGAA	9 cut(s)	804, 836, 1001, 1188, 1757, 2140, 2729, 3033, 3228
TspGWI	ACGGA	7 cut(s)	564, 1256, 1583, 2690, 3500, 3556, 3936
Tth111I	GACNNNGTC	2 cut(s)	3284, 3799
Van91I	CCANNNNNTGG	1 cut(s)	2433
Vha464I	CTTAAG	1 cut(s)	1861
VpaK11BI	GGWCC	5 cut(s)	695, 1321, 1490, 2698, 3856
XagI	CCTNNNNNAGG	1 cut(s)	1313
XapI	RAATTY	3 cut(s)	1839, 2946, 3963
XceI	RCATGY	5 cut(s)	754, 1978, 2066, 2602, 3250
XmaJI	CCTAGG	1 cut(s)	3517
XmiI	GTMKAC	1 cut(s)	3239
XmnI	GAANNNNTTC	2 cut(s)	2791, 3009
XspI	CTAG	5 cut(s)	600, 945, 2325, 3518, 3732
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.