Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Forward (+)

22033145 .. 22042695

Gene Structure 9551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3828 bp

ATGGCAGGCTTAGCCCCAAAGAAGCAGAAGGAGAAGGAAGAGTCGGAGTTGGATTCGGCAGTTGCGGTTGGACTGGGTGAAGAAGAAGACGACGAGTACGGCGCAAAGGAGGCAGTGCTCCAAAAGTACTTCCTTCAGGAATGGAAGCTCGTCAAGTCCATCTTAGACGACATCGTTTCTCACAAGCGCGTCTCCGATCCCTCCGCTCCCCACAAGATCCGATCCATTATGGACAAGTATCAAGAACAGGGTCAATTGGTTGAGCCTTACCTGGAGAGCATTGTTTCTCCCCTCATGTTTATCGTCCGCTCTAAGACAGTTGAATTAGGAGTGGCTTCAAACAAGATTCTTCAAGTAATTAAGCCTATATGCATCATCATTTACTCTCTGGTCACAGTTTGCGGGTACAAGGCTGTCGTCAGGTTCTTCCCGCATCAAGTTTCTGACTTGGAACTTGCTGTGTCTCTCTTGGAGAAGTGCCACCACACAACTTCAGTATCATCGTTGCGGCAGGAAAGTACAGGAGAGATGGAGGCCAAATGTGTGATACTTTTGTGGCTCTCTATACTTGTGTTGGTTCCGTTTGATATCTCCACTGTTGATACTAGCATTGCAAACAACAGTAATCTTGGTAAACTTGAGCCAGCTCCGCTGGTATTGAGAATAACAGGGATATCTAAGGATTACCTTTCAAATGCTGGTCCTATGCGCACTATAGCTGCTTTGCTGCTCTCAAAGCTTCTAACACGTCCAGACATGCCAAAGGCCTTTTCCAGCTTCGTTGAATGGACACATGAAGTCCTATCTTCTCTCACAGATGATGTCATGAATCACTTTCGCTTACTTGGAGCTTTAGAAGCCCTGGCTGCTATATTCAAGGCCGGTGGGCGGAAACTCTTGCTTGATGTGGTTCCTATTGTCTGGGATGACATCTCATTGTTGATCAAGTCTAGCTATGCAGCTAAGAGTCCATTGCTTCGCAAGTATCTGATGAAATTAACTCAGAGGATAGGGCTTACTTGCCTCCCTCATCGTTCACCTTCCTGGCGCTATGTGGGAAAAACAAACTCGCTGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAGCTGGCGAATGCAATGATGCTACAAATGCCAAGGATTTAAACTCAGAACCAAGTTCAACTTGCGTGGAAGATGAAGAAATGGATGTTCCAGAAATTGTAGAGGAGATTATTGAGATGTTACTCACTGGACTGAGAGATACGGACACTGTTGTACGTTGGTCTGCTGCAAAAGGTATTGGTCGCACTACTTCACGTCTTACAGCTGCCCTTTCAGAGGAGGTCCTATCATCTGTTTTGGAGCTGTTTTCGCCAGGCGAGGGTGATGGGTCATGGCATGGAGGTTGCTTAGCTTTGGCTGAATTGGCACGCAGAGGATTGCTCTTACCTGTCAGCCTTCCTAAAGTTGTACCTGTTGTTGTGAAGGCGCTACATTATGATATTCGAAGAGGTCCACACAGTGTTGGATCTCATGTACGAGATGCTGCAGCTTATGTTTGTTGGGCTTTTGGCCGTGCATACTATCATACGGATATGAGAAATATATTGGATCAGCTTGCGCCACACCTTCTAACAGTGGCCTGCTATGACCGTGAGGTTAATTGTAGAAGAGCAGCAGCAGCAGCTTTTCAGGAAAATGTTGGGAGACAGGGTAGTTACCCTCATGGAATTGACATAGTGAACGCTGCAGACTATTTTTCACTTTCTTCACGAGCAAACTCTTATGTTCATGTTGCTGTCTCTATCGCTCAATATGAGGGATATCTTTATCCCTTTGTGGATGAGCTACTGTATAACAAAATTTGTCACTGGGAAAAAGGCTTAAGAGAACTTGCTGCCGAGGCTCTCTCTTCTCTTGTTAAATATGATCCTGAATATTTTGCAAACTATGCTTTGGAGAAAATAATTCCTTGTACTCTCTCATCTGATCTGTGCATGCGCCATGGAGCGACACTGGCAACTGGAGAACTTGTTCTAGCACTACATCAATGTGATTATGCTCTTTCCGCTGATAAACAAAAACGTGTTGCTGGTGTTGTACCTGCTATTGCGAAAGCACGCCTTTATCGCGGGAAAGGTGGAGAGATTATGCGCTCAGCTGTTTCCCGCTTCATAGAATGTATATCTGTATCTTCTGTGTCGTTACCGGAAAAGATAAAGCGCAGTTTGCTTGATACTCTTAATGAGAACTTGAGACATCCTAATTCTCAGATTCAGGATGCAGCAGTTAAAGCTCTGAAGCACTTTGTGCAAGCATATCTAATTGCTGCAGATGTTGGAGGTGCTAGTATAACATCAAAGTACCTGGAACTGTTGACTGATCCAAATGTGGCTGTAAGAAGAGGATCAGCATTGGCGATAGGTGTTTTGCCCTGCAAACTTCTTGCCAATAGGTGGAAGGATGTGCTTCTGAAGCTTTGTAACTCTTGTGCAATTGAGGACAACCCTGATGATAGAGATGCGGAAGCACGAGTAAATGCAGTCAAAGGGCTTGTTTCAGTATGTGAAGCATTAACTCAGGAGAAGGAGCATTCTGGAGTCCAATTGATCGAGGATGACATGTCTTTGTTCCTTCTTATCAAGGATAGAATAATGACAGCTTTATTGAAAGCTCTCGATGACTATTCTGTGGATAACAGAGGTGATGTGGGTTCTTGGGTCCGCGAGGCTGCTATGAATGGCCTTGAGAGATGTACATATATCCTGTGCAAGAGAGATTCTATTGGTCTGAGTGGAAGATCAGGTGGAATCGATTCTGCAATTGAGCTGGCGCCCAATGCTGACAATCACCAGTTACATTTGTTGTTTGATGCAAATCTTGCTACCAGTATAGTTGGGGGAATATGTAAGCAAGCTGTAGAGAAGATGGATAAACTGAGAGAAGCAGCTGCAAAGGTGCTACAGAGAATTTTGTTCAATAATGTAGCTTACGTCGAACATATACCACACAGGAAAAAGTTGGAAGAAATTGTTCCTAATGAAGCTGACTTAAAGTGGGGGGTACCAACCTTTTCGTATCCTCGTTTTGTGCAATTGCTTCAGTTTGGCTGTTATAGCAGATCAGTGGTATCTGGGTTAGTTATCTCTATTGGTGGGTTGCAAGATTCTTTGAGGAAGGCATCACTCACAGCATTGTTAGAGTATCTTCAAGTGGTAAAAAGTGAAGACCAGAATGAAAAGTCCAGAGAGTATATGCTGTCTACTGACATGCTTTGGGTTCTCGAACACTATAGGAGATGTGACAGAGTCATTGTACCTTTATTGAAGACCATCGAGATTCTTTTCAGCAAAAGGATATTCTTGACTATGGAGAGTCAAACAGTTGTTTTCTGTGCTGGTGCTTTGGATTCTCTGGAAGTTGAATTAAAAGGATCAAAGGACTTTTCGAAGCTATATGCGGGCATTGCAATACTTGGATATATAGCTTCAGTTTCAGATTCCATAAATAGTCGGGCCTTCTCTCAGCTTCTCCGTTTTCTAGGCCATCGTTACCCTAAGATACGGAAAGCTTCTGCGGAACAAGTTTACCTTGTTCTCTTGCAAAATGAGGGTCTTGTGGCTGAAGACAAGATCGACAAAGCGCTTGAAATTATTTCAGAAACCTGCTGGGAAGGTGATACTGAAGCAGCAAAGCTCCAACGGTTCGAGTTATATGATATGGCTGGTCTTGACACAGATCAGATTCGTAAGACTAGTAACAGAGTATCAACTGGTAACAGAAGTGCAACAATCACCGATGAAAATGCATCTTATTCCTCGTTAGTCGACTCAAGTGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

1275

Amino Acids

140.85

Weight (kDa)

6.08

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD	PF23579	77 - 267	1.3e-53	Tubulin-specific chaperone D-like, ARM repeat
ARM_TBCD_2nd	PF25767	325 - 572	3.1e-108	Tubulin-specific chaperone D-like, ARM repeats
TFCD_C	PF12612	958 - 1145	5e-56	Tubulin folding cofactor D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	710
Acc36I	ACCTGC	2 cut(s)	2095, 3656
Acc65I	GGTACC	1 cut(s)	3046
AccB1I	GGYRCC	2 cut(s)	2815, 3046
AccB7I	CCANNNNNTGG	1 cut(s)	2439
AccBSI	CCGCTC	2 cut(s)	206, 309
AccI	GTMKAC	2 cut(s)	3245, 3810
AccII	CGCG	3 cut(s)	189, 2115, 2709
AclWI	GGATC	9 cut(s)	191, 211, 216, 1519, 1602, 1907, 2360, 2398, 3424
AcoI	YGGCCR	1 cut(s)	1555
AcsI	RAATTY	2 cut(s)	1845, 2952
AcuI	CTGAAG	8 cut(s)	119, 477, 2303, 2477, 3068, 3456, 3627, 3687
AcyI	GRCGYC	1 cut(s)	2816
AdeI	CACNNNGTG	2 cut(s)	1505, 2293
AfeI	AGCGCT	1 cut(s)	3627
AfiI	CCNNNNNNNGG	4 cut(s)	888, 1321, 1364, 2439
AflII	CTTAAG	1 cut(s)	1867
AflIII	ACRYGT	3 cut(s)	746, 2068, 2604
AhlI	ACTAGT	1 cut(s)	3737
AjiI	CACGTC	2 cut(s)	749, 1301
AjnI	CCWGG	5 cut(s)	270, 861, 1043, 1357, 2349
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AloI	GAACNNNNNNTCC	2 cut(s)	2001, 2033
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	5 cut(s)	196, 468, 1684, 1789, 2233
AlwI	GGATC	9 cut(s)	191, 211, 216, 1519, 1602, 1907, 2360, 2398, 3424
Aor51HI	AGCGCT	1 cut(s)	3627
AoxI	GGCC	8 cut(s)	534, 765, 879, 1555, 1623, 2725, 3498, 3526
ApoI	RAATTY	2 cut(s)	1845, 2952
ArsI	GACNNNNNNTTYG	2 cut(s)	3580, 3612
Asp700I	GAANNNNTTC	3 cut(s)	2016, 2797, 3015
Asp718I	GGTACC	1 cut(s)	3046
AspS9I	GGNCC	5 cut(s)	701, 1327, 1496, 2704, 3498
AsuHPI	GGTGA	7 cut(s)	89, 1029, 1379, 2699, 2825, 3671, 3769
AsuII	TTCGAA	2 cut(s)	1489, 3431
AvaII	GGWCC	4 cut(s)	701, 1327, 1496, 2704
BaeI	ACNNNNGTAYC	4 cut(s)	480, 513, 539, 572
BanI	GGYRCC	2 cut(s)	2815, 3046
BauI	CACGAG	2 cut(s)	1755, 2514
BbsI	GAAGAC	4 cut(s)	93, 3216, 3317, 3615
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	6 cut(s)	167, 523, 1364, 2905, 3323, 3537
BceAI	ACGGC	2 cut(s)	115, 1542
BcgI	CGANNNNNNTGC	2 cut(s)	3770, 3804
BciT130I	CCWGG	5 cut(s)	272, 863, 1045, 1359, 2351
BciVI	GTATCC	1 cut(s)	3072
BclI	TGATCA	1 cut(s)	942
BcoDI	GTCTC	5 cut(s)	196, 468, 1684, 1789, 2233
BcuI	ACTAGT	1 cut(s)	3737
BfaI	CTAG	6 cut(s)	606, 951, 2021, 2331, 3524, 3738
BfmI	CTRYAG	7 cut(s)	714, 1530, 1731, 2313, 2901, 2945, 3274
BfoI	RGCGCY	4 cut(s)	1051, 1475, 2819, 3629
BfrI	CTTAAG	1 cut(s)	1867
BfuAI	ACCTGC	2 cut(s)	2095, 3656
BfuI	GTATCC	1 cut(s)	3072
BlpI	GCTNAGC	3 cut(s)	10, 1393, 2140
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	5 cut(s)	272, 863, 1045, 1359, 2351
Bme18I	GGWCC	4 cut(s)	701, 1327, 1496, 2704
BmgBI	CACGTC	2 cut(s)	749, 1301
BmgT120I	GGNCC	5 cut(s)	701, 1327, 1496, 2704, 3498
BmiI	GGNNCC	5 cut(s)	579, 912, 2705, 2817, 3048
BmrFI	CCNGG	5 cut(s)	272, 863, 1045, 1359, 2351
BmrI	ACTGGG	2 cut(s)	83, 1864
BmuI	ACTGGG	2 cut(s)	83, 1864
BpiI	GAAGAC	4 cut(s)	93, 3216, 3317, 3615
BplI	GAGNNNNNCTC	4 cut(s)	1410, 1442, 1877, 1909
BpmI	CTGGAG	3 cut(s)	293, 2028, 2601
Bpu1102I	GCTNAGC	3 cut(s)	10, 1393, 2140
Bpu14I	TTCGAA	2 cut(s)	1489, 3431
BpuEI	CTTGAG	4 cut(s)	659, 2257, 2750, 3799
Bsa29I	ATCGAT	1 cut(s)	2796
BsaBI	GATNNNNATC	1 cut(s)	2859
BsaHI	GRCGYC	1 cut(s)	2816
BsaJI	CCNNGG	4 cut(s)	861, 1137, 1884, 1987
BsaWI	WCCGGW	1 cut(s)	2191
BsaXI	ACNNNNNCTCC	4 cut(s)	1681, 1711, 2001, 2031
Bsc4I	CCNNNNNNNGG	4 cut(s)	888, 1321, 1364, 2439
Bse118I	RCCGGY	1 cut(s)	881
Bse1I	ACTGG	8 cut(s)	78, 1237, 1859, 2004, 2011, 2836, 2871, 3760
Bse3DI	GCAATG	4 cut(s)	609, 971, 1126, 3447
Bse8I	GATNNNNATC	1 cut(s)	2859
BseBI	CCWGG	5 cut(s)	272, 863, 1045, 1359, 2351
BseCI	ATCGAT	1 cut(s)	2796
BseDI	CCNNGG	4 cut(s)	861, 1137, 1884, 1987
BseGI	GGATG	7 cut(s)	931, 1195, 1831, 2242, 2269, 2452, 2605
BseJI	GATNNNNATC	1 cut(s)	2859
BseLI	CCNNNNNNNGG	4 cut(s)	888, 1321, 1364, 2439
BseMI	GCAATG	4 cut(s)	609, 971, 1126, 3447
BseMII	CTCAG	9 cut(s)	1016, 1164, 1229, 2154, 2267, 2576, 2765, 2912, 3521
BseNI	ACTGG	8 cut(s)	78, 1237, 1859, 2004, 2011, 2836, 2871, 3760
BseRI	GAGGAG	2 cut(s)	1223, 1337
BseYI	CCCAGC	2 cut(s)	1072, 3651
Bsh1236I	CGCG	3 cut(s)	189, 2115, 2709
BshFI	GGCC	8 cut(s)	536, 767, 881, 1557, 1625, 2727, 3500, 3528
BshNI	GGYRCC	2 cut(s)	2815, 3046
BshVI	ATCGAT	1 cut(s)	2796
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	882, 2192
BslI	CCNNNNNNNGG	4 cut(s)	888, 1321, 1364, 2439
BsmAI	GTCTC	5 cut(s)	196, 468, 1684, 1789, 2233
BsmBI	CGTCTC	1 cut(s)	196
BsmI	GAATGC	2 cut(s)	1121, 2575
BsnI	GGCC	8 cut(s)	536, 767, 881, 1557, 1625, 2727, 3500, 3528
Bsp119I	TTCGAA	2 cut(s)	1489, 3431
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	2738
Bsp1720I	GCTNAGC	3 cut(s)	10, 1393, 2140
Bsp19I	CCATGG	1 cut(s)	1987
BspANI	GGCC	8 cut(s)	536, 767, 881, 1557, 1625, 2727, 3500, 3528
BspCNI	CTCAG	9 cut(s)	1015, 1163, 1230, 2153, 2266, 2575, 2766, 2913, 3520
BspDI	ATCGAT	1 cut(s)	2796
BspFNI	CGCG	3 cut(s)	189, 2115, 2709
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	5 cut(s)	579, 912, 2705, 2817, 3048
BspMAI	CTGCAG	3 cut(s)	1534, 1735, 2317
BspMI	ACCTGC	2 cut(s)	2095, 3656
BspPI	GGATC	9 cut(s)	191, 211, 216, 1519, 1602, 1907, 2360, 2398, 3424
BspQI	GCTCTTC	1 cut(s)	1648
BspT104I	TTCGAA	2 cut(s)	1489, 3431
BspT107I	GGYRCC	2 cut(s)	2815, 3046
BspTI	CTTAAG	1 cut(s)	1867
BsrBI	CCGCTC	2 cut(s)	206, 309
BsrDI	GCAATG	4 cut(s)	609, 971, 1126, 3447
BsrFI	RCCGGY	1 cut(s)	881
BsrGI	TGTACA	1 cut(s)	2738
BsrI	ACTGG	8 cut(s)	78, 1237, 1859, 2004, 2011, 2836, 2871, 3760
BssAI	RCCGGY	1 cut(s)	881
BssECI	CCNNGG	4 cut(s)	861, 1137, 1884, 1987
BssNI	GRCGYC	1 cut(s)	2816
BssSI	CACGAG	2 cut(s)	1755, 2514
BssT1I	CCWWGG	2 cut(s)	1137, 1987
Bst2BI	CACGAG	2 cut(s)	1755, 2514
Bst2UI	CCWGG	5 cut(s)	272, 863, 1045, 1359, 2351
Bst6I	CTCTTC	5 cut(s)	33, 1486, 1648, 1900, 2380
BstACI	GRCGYC	1 cut(s)	2816
BstAFI	CTTAAG	1 cut(s)	1867
BstAPI	GCANNNNNTGC	3 cut(s)	1934, 2293, 2864
BstAUI	TGTACA	1 cut(s)	2738
BstBI	TTCGAA	2 cut(s)	1489, 3431
BstDSI	CCRYGG	1 cut(s)	1987
BstENI	CCTNNNNNAGG	1 cut(s)	1319
BstF5I	GGATG	7 cut(s)	931, 1195, 1831, 2242, 2269, 2452, 2605
BstFNI	CGCG	3 cut(s)	189, 2115, 2709
BstH2I	RGCGCY	4 cut(s)	1051, 1475, 2819, 3629
BstMAI	GTCTC	5 cut(s)	196, 468, 1684, 1789, 2233
BstNI	CCWGG	5 cut(s)	272, 863, 1045, 1359, 2351
BstNSI	RCATGY	4 cut(s)	760, 1984, 2608, 3256
BstSCI	CCNGG	5 cut(s)	270, 861, 1043, 1357, 2349
BstSFI	CTRYAG	7 cut(s)	714, 1530, 1731, 2313, 2901, 2945, 3274
BstUI	CGCG	3 cut(s)	189, 2115, 2709
BstV2I	GAAGAC	4 cut(s)	93, 3216, 3317, 3615
BstX2I	RGATCY	2 cut(s)	216, 1511
BstYI	RGATCY	2 cut(s)	216, 1511
Bsu15I	ATCGAT	1 cut(s)	2796
BsuI	GTATCC	1 cut(s)	3072
BsuRI	GGCC	8 cut(s)	536, 767, 881, 1557, 1625, 2727, 3500, 3528
BsuTUI	ATCGAT	1 cut(s)	2796
BtgI	CCRYGG	1 cut(s)	1987
BtrI	CACGTC	2 cut(s)	749, 1301
BtsCI	GGATG	7 cut(s)	931, 1195, 1831, 2242, 2269, 2452, 2605
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	9 cut(s)	120, 594, 1230, 1251, 1510, 1626, 1852, 1997, 3114
BveI	ACCTGC	2 cut(s)	2095, 3656
CciI	TCATGA	1 cut(s)	825
Cfr10I	RCCGGY	1 cut(s)	881
Cfr13I	GGNCC	5 cut(s)	701, 1327, 1496, 2704, 3498
ClaI	ATCGAT	1 cut(s)	2796
CseI	GACGC	1 cut(s)	178
CspCI	CAANNNNNGTGG	4 cut(s)	865, 900, 1152, 1187
DinI	GGCGCC	1 cut(s)	2817
DraI	TTTAAA	1 cut(s)	1146
DraIII	CACNNNGTG	2 cut(s)	1505, 2293
EaeI	YGGCCR	1 cut(s)	1555
Eam1104I	CTCTTC	5 cut(s)	33, 1486, 1648, 1900, 2380
EarI	CTCTTC	5 cut(s)	33, 1486, 1648, 1900, 2380
EciI	GGCGGA	1 cut(s)	904
Eco130I	CCWWGG	2 cut(s)	1137, 1987
Eco147I	AGGCCT	1 cut(s)	767
Eco32I	GATATC	3 cut(s)	589, 675, 1808
Eco47I	GGWCC	4 cut(s)	701, 1327, 1496, 2704
Eco47III	AGCGCT	1 cut(s)	3627
Eco57I	CTGAAG	8 cut(s)	119, 477, 2303, 2477, 3068, 3456, 3627, 3687
EcoNI	CCTNNNNNAGG	1 cut(s)	1319
EcoO109I	RGGNCCY	1 cut(s)	1327
EcoRII	CCWGG	5 cut(s)	270, 861, 1043, 1357, 2349
EcoRV	GATATC	3 cut(s)	589, 675, 1808
EcoT14I	CCWWGG	2 cut(s)	1137, 1987
EcoT22I	ATGCAT	2 cut(s)	374, 3793
EgeI	GGCGCC	1 cut(s)	2817
EheI	GGCGCC	1 cut(s)	2817
ErhI	CCWWGG	2 cut(s)	1137, 1987
Esp3I	CGTCTC	1 cut(s)	196
FalI	AAGNNNNNCTT	8 cut(s)	146, 178, 1150, 1182, 2091, 2123, 3558, 3590
FauI	CCCGC	5 cut(s)	395, 438, 2108, 2159, 3436
FbaI	TGATCA	1 cut(s)	942
FblI	GTMKAC	2 cut(s)	3245, 3810
FokI	GGATG	7 cut(s)	938, 1202, 1838, 2229, 2276, 2459, 2612
FspAI	RTGCGCAY	1 cut(s)	710
FspBI	CTAG	6 cut(s)	606, 951, 2021, 2331, 3524, 3738
FspI	TGCGCA	1 cut(s)	710
GsaI	CCCAGC	2 cut(s)	1076, 3655
GsuI	CTGGAG	3 cut(s)	293, 2028, 2601
HaeII	RGCGCY	4 cut(s)	1051, 1475, 2819, 3629
HaeIII	GGCC	8 cut(s)	536, 767, 881, 1557, 1625, 2727, 3500, 3528
HapII	CCGG	2 cut(s)	882, 2192
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	2816
HincII	GTYRAC	2 cut(s)	2361, 3811
HindII	GTYRAC	2 cut(s)	2361, 3811
HindIII	AAGCTT	3 cut(s)	737, 2459, 3552
HpaII	CCGG	2 cut(s)	882, 2192
HphI	GGTGA	7 cut(s)	89, 1029, 1379, 2699, 2825, 3671, 3769
Hpy166II	GTNNAC	8 cut(s)	635, 1037, 1499, 1726, 2361, 3246, 3571, 3811
Hpy8I	GTNNAC	8 cut(s)	635, 1037, 1499, 1726, 2361, 3246, 3571, 3811
Hpy99I	CGWCG	2 cut(s)	95, 2981
HpyCH4IV	ACGT	5 cut(s)	748, 1261, 1300, 2068, 2976
HpySE526I	ACGT	5 cut(s)	748, 1261, 1300, 2068, 2976
Hsp92I	GRCGYC	1 cut(s)	2816
KasI	GGCGCC	1 cut(s)	2815
KpnI	GGTACC	1 cut(s)	3050
Ksp22I	TGATCA	1 cut(s)	942
LguI	GCTCTTC	1 cut(s)	1648
LmnI	GCTCC	8 cut(s)	123, 211, 652, 848, 1345, 1991, 2572, 3684
MaeI	CTAG	6 cut(s)	606, 951, 2021, 2331, 3524, 3738
MaeII	ACGT	5 cut(s)	748, 1261, 1300, 2068, 2976
MbiI	CCGCTC	2 cut(s)	206, 309
MfeI	CAATTG	5 cut(s)	254, 2478, 2588, 2805, 3077
MflI	RGATCY	2 cut(s)	216, 1511
MhlI	GDGCHC	1 cut(s)	120
Mly113I	GGCGCC	1 cut(s)	2816
MlyI	GAGTC	6 cut(s)	50, 976, 2592, 3300, 3367, 3806
MmeI	TCCRAC	7 cut(s)	24, 30, 49, 1489, 2302, 2985, 3706
Mph1103I	ATGCAT	2 cut(s)	374, 3793
MroXI	GAANNNNTTC	3 cut(s)	2016, 2797, 3015
MslI	CAYNNNNRTG	1 cut(s)	2034
MspA1I	CMGCKG	5 cut(s)	652, 1310, 2054, 2144, 2933
MspCI	CTTAAG	1 cut(s)	1867
MspI	CCGG	2 cut(s)	882, 2192
MspR9I	CCNGG	5 cut(s)	272, 863, 1045, 1359, 2351
MunI	CAATTG	5 cut(s)	254, 2478, 2588, 2805, 3077
Mva1269I	GAATGC	2 cut(s)	1121, 2575
MvaI	CCWGG	5 cut(s)	272, 863, 1045, 1359, 2351
MvnI	CGCG	3 cut(s)	189, 2115, 2709
NarI	GGCGCC	1 cut(s)	2816
NcoI	CCATGG	1 cut(s)	1987
NlaIV	GGNNCC	5 cut(s)	579, 912, 2705, 2817, 3048
NmeAIII	GCCGAG	1 cut(s)	1909
NmuCI	GTSAC	3 cut(s)	391, 1850, 3284
NsbI	TGCGCA	1 cut(s)	710
NsiI	ATGCAT	2 cut(s)	374, 3793
NspI	RCATGY	4 cut(s)	760, 1984, 2608, 3256
NspV	TTCGAA	2 cut(s)	1489, 3431
PaeI	GCATGC	1 cut(s)	1984
PagI	TCATGA	1 cut(s)	825
PceI	AGGCCT	1 cut(s)	767
PciI	ACATGT	1 cut(s)	2604
PciSI	GCTCTTC	1 cut(s)	1648
PctI	GAATGC	2 cut(s)	1121, 2575
PdmI	GAANNNNTTC	3 cut(s)	2016, 2797, 3015
PflFI	GACNNNGTC	1 cut(s)	3290
PflMI	CCANNNNNTGG	1 cut(s)	2439
PleI	GAGTC	6 cut(s)	49, 975, 2591, 3299, 3366, 3806
PluTI	GGCGCC	1 cut(s)	2819
PpsI	GAGTC	6 cut(s)	49, 975, 2591, 3299, 3366, 3806
PpuMI	RGGWCCY	1 cut(s)	1327
PscI	ACATGT	1 cut(s)	2604
Psp5II	RGGWCCY	1 cut(s)	1327
Psp6I	CCWGG	5 cut(s)	270, 861, 1043, 1357, 2349
PspFI	CCCAGC	2 cut(s)	1072, 3651
PspGI	CCWGG	5 cut(s)	270, 861, 1043, 1357, 2349
PspN4I	GGNNCC	5 cut(s)	579, 912, 2705, 2817, 3048
PspPI	GGNCC	5 cut(s)	701, 1327, 1496, 2704, 3498
PspPPI	RGGWCCY	1 cut(s)	1327
PstI	CTGCAG	3 cut(s)	1534, 1735, 2317
PsuI	RGATCY	2 cut(s)	216, 1511
PsyI	GACNNNGTC	1 cut(s)	3290
PvuII	CAGCTG	3 cut(s)	1310, 2144, 2933
RseI	CAYNNNNRTG	1 cut(s)	2034
SalI	GTCGAC	1 cut(s)	3809
SapI	GCTCTTC	1 cut(s)	1648
Sau96I	GGNCC	5 cut(s)	701, 1327, 1496, 2704, 3498
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	6 cut(s)	50, 976, 2592, 3300, 3367, 3806
ScrFI	CCNGG	5 cut(s)	272, 863, 1045, 1359, 2351
SduI	GDGCHC	1 cut(s)	120
SfcI	CTRYAG	7 cut(s)	714, 1530, 1731, 2313, 2901, 2945, 3274
SfoI	GGCGCC	1 cut(s)	2817
SfuI	TTCGAA	2 cut(s)	1489, 3431
SinI	GGWCC	4 cut(s)	701, 1327, 1496, 2704
SmiMI	CAYNNNNRTG	1 cut(s)	2034
SmlI	CTYRAG	5 cut(s)	638, 1867, 2236, 2729, 3814
SmoI	CTYRAG	5 cut(s)	638, 1867, 2236, 2729, 3814
SpeI	ACTAGT	1 cut(s)	3737
SphI	GCATGC	1 cut(s)	1984
SseBI	AGGCCT	1 cut(s)	767
SspDI	GGCGCC	1 cut(s)	2815
SspI	AATATT	1 cut(s)	1922
SspMI	CTAG	6 cut(s)	606, 951, 2021, 2331, 3524, 3738
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	5 cut(s)	270, 861, 1043, 1357, 2349
StyI	CCWWGG	2 cut(s)	1137, 1987
TaiI	ACGT	5 cut(s)	751, 1264, 1303, 2071, 2979
TatI	WGTACW	4 cut(s)	126, 518, 1958, 2738
TauI	GCSGC	1 cut(s)	511
TscAI	CASTG	9 cut(s)	120, 601, 1237, 1258, 1510, 1626, 1859, 2004, 3114
TseFI	GTSAC	3 cut(s)	391, 1850, 3284
Tsp45I	GTSAC	3 cut(s)	391, 1850, 3284
TspGWI	ACGGA	5 cut(s)	570, 1262, 1589, 3506, 3562
TspRI	CASTG	9 cut(s)	120, 601, 1237, 1258, 1510, 1626, 1859, 2004, 3114
Tth111I	GACNNNGTC	1 cut(s)	3290
Van91I	CCANNNNNTGG	1 cut(s)	2439
Vha464I	CTTAAG	1 cut(s)	1867
VpaK11BI	GGWCC	4 cut(s)	701, 1327, 1496, 2704
XagI	CCTNNNNNAGG	1 cut(s)	1319
XapI	RAATTY	2 cut(s)	1845, 2952
XceI	RCATGY	4 cut(s)	760, 1984, 2608, 3256
XmiI	GTMKAC	2 cut(s)	3245, 3810
XmnI	GAANNNNTTC	3 cut(s)	2016, 2797, 3015
XspI	CTAG	6 cut(s)	606, 951, 2021, 2331, 3524, 3738
ZrmI	AGTACT	1 cut(s)	128
Zsp2I	ATGCAT	2 cut(s)	374, 3793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.