Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000177.1

Orthogroup ID

OG0007907

Physical Location & Seq

Genomic Coordinates Forward (+)

49115 .. 61109

Gene Structure 11995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000177.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3939 bp

atggcaggcttagccccaaagcatcagaagcagaaggaggagtcggattcggcagttgcagttggattgggtgaagaagaagacgacgagtacggcgcaaaggaggcggtgctccaaaagtactttcttcaagaatggaagctcgtcaagtccatcttagacgacatcgtttcgcacaagcgcgtctccgatacctccgctccccacaagatccgatccattatggacaagtatcaagaacagggtcaattggtcgagccttacctggagagcattgtttctccgctcatgtttatcgtccgctctaagacagttgaattaggagtggcttcaaacaagattcttcaagtaattaagcctatatgcatcattatctactctctggtcacagtttgtgggtacaaggccgtcgtcaggttcttcccgcatcaggtttctgacttggaacttgctgtgtccctcttggagaaatgccaccacacaacttcagtatcatcgttgcggcaggaaagtacaggagagatggaggccaaatgtgtgatacttttgtggctctctatacttgtgttggttccgtttgatatctccacggttgatactagcattgcaaacaacagtaatcttggtaaactcgagccagctccactggtattgagaataacagggatatctaaggattacctttcaaatgctggtcctatgcgcactatagctgctttgctgctctcaaagcttctaacacgtccagacatgccaaaggccttttccagcttcgttgaatggacacatgaagtcctatcttctctcacagatgatgtcatgaatcactttcgcttacttggagctttagaagccctggctgctatattcaaggctggtgggcggaaactcttgcttgatgtggttcctattgtctgggatgacatctcattgttgatcaagtctagctatgcagctaagagtccattgcttcgcaagtatcttatgaaattaactcaaaggatagggcttacttgcctccctcatcgttcaccttcctggcgctatgtgggaaaaacaaactcgctgggagagaacatttctttgtctgcatcagggaaagctggcgaatgcaatgatgctacaaatgccaaggatttaaactcagaaccaagttcaacttgcgtggaagatgaagaaatggatgttccagaaattgtagaggagattattgagatgttgctcactggactgagagatacggacactgttgtgcgttggtctgctgcaaaaggtattggtcgaactacttcacgtcttacagctgccctttcagaggaggtcctatcatctgttttggagctgttttcgccaggcgaggaaaaaggcttaagagaacttgctgccgaggctctctcttctcttgttaaatatgatcctgaatattttgcaaactatgctttggagaaaataattccttgtactctctcatctgatctgtgcatgcgccatggagcgacactggcaactggagaacttgttttagcactacatcaatgtgattatgctctttccgctgataaacaaaaacatgttgctggtgttgtacctgctattgcgaaagcacgcctttatcgcgggaaaggtggagagattatgcgctcagctgtttcccgcttcatagaatgtatatctgtatcttctgtgtcgttaccagaaaagataaagcgcagtttgcttgatactcttaatgagaacttgagacatcctaattctcagattcaggatgcagcagttaaagctctgaagcactttgtgcaagcatatctaattgctgcagatgttggaggtgctagtataacatcaaagtacctggaactgttgactgatccaaatgtggctgagctaaattatccaagtttgggacactataaacaaaaacatgttgctggtgttgtacctgctattgcgaaagcacgcctttatcgcgggaaaggtggagagattatgcgctcagctgtttcccgcttcatagaatgtatatctgtatcttctgtgtcgttaccagaaaagataaagcgcagtttgcttgatactcttaatgagaacttgagacatcctaattctcagattcaggatgcagcagttaaagctctgaagcactttgtgcaagcatatctaattgctgcagatgttggaggtgctagtataacatcaaagtacctggaactgttgactgatccaaatgtggctgtaagaagaggatcagcattggcaataggtgttttgccctgcaaacttcttgccaataggtggaaggatgtgcttctgaagctttgtaactcttgtgcaattgaggacaaccctgatgatagagacgcggaagcacgagtaaatgcagtcaaagggcttgtttcagtatgtgaagcattaactcaggaaaaggagcattctggagtccaattgatcgaggatgacatgtctttgttccttcttatcaaggatagaataatgacagctttattgaaagctctcgatgactattctgtggataacagaggtgatgtgggttcttgggtccgcgaggctgctatgaatggccttgagagatgtacatatatcctgtgcaagagagattctattggtctgagtggaagatcaggtggaatcgattctgcaattgagctggagcccaatgctgacaatctccagttacatttgttgtttgatgcaaatcttgctaccagtatagttgggggaatatgtaagcaagctgtagagaagatggataaactgagagaagcagctgcaaaggtgctacagagaattttgtacaataatgtagcttacgtcgaacacataccacacaggaaaaagttggaagaaattgttcctaatgaagctgaattaaagtggggggtaccaaccttttcgtatcctcgttttgtgcaattgcttcagtttggctgttatagcagatcagtggtatctgggttagttatctctattggtgggttgcaagattctttgaggaaggcatcactcacagcattgttagagtatcttcaagtggtaaaaagtgaagaccagaatgaaaagtccagagagtatttgctgtctactgacatgctttgggttcttgaacactataggagatgtgacagagtcattgtacctttattgaagaccatcgagattcttttcagcaaaaggatattcttgactatggagagtcaaacagttgttttctgtgctggtgctttggattctctggaagttgaattaaaaggatcaaaggacttttccaagctatatgcgggcattgcaatacttggatatatagcttcagtttcagattccataaatagtcgggctttctctcagcttctccgttttctaggccatcgttaccccaagatacggaaagcttctgctgaacaagtttaccttgttctcttgcaaaatgagggtctcgtggcagaagacaagattgacaaagcgcttgaaattatttcagaaacctgctgggaaggtgatactgaagcagcaaagctccaacggttcgagttatatgatatggctggtcttgacacagatcagattcgtaagactagtaacagactcagtgctaattccgactccgcgccaaaggacgccacgccgttcacgatgacgactacgtcagccacgaactattccccaacccaagaggcccaattcgcaaaatggcaggcggttcaaggcaactcggaagaccacgacggttcttgcgccgacgacggtgactatgagggaggaaacggaggtcagtctaactcggattacataaaaggttttgaaattttggtcgaagtcatggactttggtagcagatcggaggtggcaaatcggagatggcagctcaagttttcccatttcatgtgtgttaggagggtcaacttagccgacttcctcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

1312

Amino Acids

144.78

Weight (kDa)

5.95

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60740 AT3G60740 AT3G60740
fragaria_vesca	FvH4_7g07690
malus_domestica	MD02G1313300.v1.1 MD07G1008800.v1.1
prunus_persica	Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1 Prupe.2G141700_v2.0.a1
pyrus_communis	pycom07g00760
rosa_chinensis	RchiOBHm_Chr1g0342581
rosa_laevigata	RLG00000029165 RLG00000029175
rosa_multiflora	Rmu_sc0000173.1_g000001 Rmu_ssc0000177.1_g000008
rosa_roxburghii	Rroxscaffold_4G00313120
rosa_rugosa	Rorug01G0147200.1 Rorug01G0148800.1
rosa_samantha	Rh1AG165400 Rh1BG131400 Rh1CG154100 Rh1DG166500
rosa_wichuraiana	Rw1G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3658
Acc16I	TGCGCA	1 cut(s)	704
Acc36I	ACCTGC	3 cut(s)	1597, 1948, 3509
Acc65I	GGTACC	1 cut(s)	2899
AccB1I	GGYRCC	1 cut(s)	2899
AccB7I	CCANNNNNTGG	1 cut(s)	2292
AccBSI	CCGCTC	3 cut(s)	200, 286, 303
AccI	GTMKAC	1 cut(s)	3098
AccII	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
AclWI	GGATC	7 cut(s)	205, 210, 1409, 1862, 2213, 2251, 3277
AcsI	RAATTY	2 cut(s)	2805, 3819
AcuI	CTGAAG	7 cut(s)	471, 1805, 2156, 2330, 2921, 3309, 3540
AcyI	GRCGYC	1 cut(s)	3633
AdeI	CACNNNGTG	2 cut(s)	1795, 2146
AfeI	AGCGCT	1 cut(s)	3480
AfiI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1901, 2292, 3399
AflII	CTTAAG	1 cut(s)	1369
AflIII	ACRYGT	4 cut(s)	740, 1570, 1921, 2457
AhlI	ACTAGT	1 cut(s)	3590
AjiI	CACGTC	2 cut(s)	743, 1295
AjnI	CCWGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
AjuI	GAANNNNNNNTTGG	4 cut(s)	108, 140, 748, 780
AleI	CACNNNNGTG	1 cut(s)	1250
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	5 cut(s)	190, 1735, 2086, 2349, 3455
AlwI	GGATC	7 cut(s)	205, 210, 1409, 1862, 2213, 2251, 3277
Ama87I	CYCGRG	1 cut(s)	632
Aor51HI	AGCGCT	1 cut(s)	3480
AoxI	GGCC	6 cut(s)	405, 528, 759, 2578, 3379, 3690
ApoI	RAATTY	2 cut(s)	2805, 3819
ArsI	GACNNNNNNTTYG	2 cut(s)	3433, 3465
Asp700I	GAANNNNTTC	3 cut(s)	1288, 2650, 2868
Asp718I	GGTACC	1 cut(s)	2899
AspS9I	GGNCC	4 cut(s)	695, 1321, 2557, 3691
AsuHPI	GGTGA	5 cut(s)	83, 1023, 2552, 3524, 3773
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	3 cut(s)	695, 1321, 2557
BaeI	ACNNNNGTAYC	4 cut(s)	474, 507, 533, 566
BanI	GGYRCC	1 cut(s)	2899
BanII	GRGCYC	1 cut(s)	2673
BauI	CACGAG	2 cut(s)	2367, 3452
BbsI	GAAGAC	5 cut(s)	87, 3069, 3170, 3468, 3738
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	6 cut(s)	161, 517, 2758, 3176, 3390, 3867
BceAI	ACGGC	3 cut(s)	109, 392, 3625
BciT130I	CCWGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
BciVI	GTATCC	1 cut(s)	2925
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	5 cut(s)	190, 1735, 2086, 2349, 3455
BcuI	ACTAGT	1 cut(s)	3590
BfaI	CTAG	6 cut(s)	600, 945, 1833, 2184, 3377, 3591
BfmI	CTRYAG	6 cut(s)	708, 1815, 2166, 2754, 2798, 3127
BfoI	RGCGCY	2 cut(s)	1045, 3482
BfrI	CTTAAG	1 cut(s)	1369
BfuAI	ACCTGC	3 cut(s)	1597, 1948, 3509
BfuI	GTATCC	1 cut(s)	2925
BlpI	GCTNAGC	4 cut(s)	10, 1642, 1881, 1993
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
Bme18I	GGWCC	3 cut(s)	695, 1321, 2557
BmeT110I	CYCGRG	1 cut(s)	632
BmgBI	CACGTC	2 cut(s)	743, 1295
BmgT120I	GGNCC	4 cut(s)	695, 1321, 2557, 3691
BmiI	GGNNCC	5 cut(s)	573, 906, 2558, 2670, 2901
BmrFI	CCNGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
BmsI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1756, 2107, 2698, 3026
BpiI	GAAGAC	5 cut(s)	87, 3069, 3170, 3468, 3738
BplI	GAGNNNNNCTC	2 cut(s)	1379, 1411
BpmI	CTGGAG	5 cut(s)	287, 1530, 2454, 2672, 2687
Bpu1102I	GCTNAGC	4 cut(s)	10, 1642, 1881, 1993
BpuEI	CTTGAG	4 cut(s)	1759, 2110, 2603, 3866
Bsa29I	ATCGAT	1 cut(s)	2649
BsaBI	GATNNNNATC	1 cut(s)	2712
BsaHI	GRCGYC	1 cut(s)	3633
BsaI	GGTCTC	1 cut(s)	3455
BsaJI	CCNNGG	6 cut(s)	588, 855, 1131, 1386, 1489, 3931
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 1503, 1533
Bsc4I	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1901, 2292, 3399
Bse1I	ACTGG	6 cut(s)	651, 1231, 1506, 1513, 2689, 2724
Bse3DI	GCAATG	4 cut(s)	603, 965, 1120, 3300
Bse8I	GATNNNNATC	1 cut(s)	2712
BseBI	CCWGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
BseCI	ATCGAT	1 cut(s)	2649
BseDI	CCNNGG	6 cut(s)	588, 855, 1131, 1386, 1489, 3931
BseGI	GGATG	8 cut(s)	925, 1189, 1744, 1771, 2095, 2122, 2305, 2458
BseJI	GATNNNNATC	1 cut(s)	2712
BseLI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1901, 2292, 3399
BseMI	GCAATG	4 cut(s)	603, 965, 1120, 3300
BseNI	ACTGG	6 cut(s)	651, 1231, 1506, 1513, 2689, 2724
BseRI	GAGGAG	3 cut(s)	53, 1217, 1331
BseYI	CCCAGC	2 cut(s)	1066, 3504
Bsh1236I	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
BshFI	GGCC	6 cut(s)	407, 530, 761, 2580, 3381, 3692
BshNI	GGYRCC	1 cut(s)	2899
BshVI	ATCGAT	1 cut(s)	2649
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	442, 1917
BslI	CCNNNNNNNGG	6 cut(s)	414, 430, 1315, 1901, 2292, 3399
BsmAI	GTCTC	5 cut(s)	190, 1735, 2086, 2349, 3455
BsmBI	CGTCTC	2 cut(s)	190, 2349
BsmFI	GGGAC	2 cut(s)	442, 1917
BsmI	GAATGC	2 cut(s)	1115, 2428
BsnI	GGCC	6 cut(s)	407, 530, 761, 2580, 3381, 3692
Bso31I	GGTCTC	1 cut(s)	3455
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	114, 2673
Bsp1407I	TGTACA	2 cut(s)	2591, 2811
Bsp1720I	GCTNAGC	4 cut(s)	10, 1642, 1881, 1993
Bsp19I	CCATGG	1 cut(s)	1489
BspANI	GGCC	6 cut(s)	407, 530, 761, 2580, 3381, 3692
BspDI	ATCGAT	1 cut(s)	2649
BspFNI	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	5 cut(s)	573, 906, 2558, 2670, 2901
BspMAI	CTGCAG	2 cut(s)	1819, 2170
BspMI	ACCTGC	3 cut(s)	1597, 1948, 3509
BspPI	GGATC	7 cut(s)	205, 210, 1409, 1862, 2213, 2251, 3277
BspT107I	GGYRCC	1 cut(s)	2899
BspTI	CTTAAG	1 cut(s)	1369
BspTNI	GGTCTC	1 cut(s)	3455
BsrBI	CCGCTC	3 cut(s)	200, 286, 303
BsrDI	GCAATG	4 cut(s)	603, 965, 1120, 3300
BsrGI	TGTACA	2 cut(s)	2591, 2811
BsrI	ACTGG	6 cut(s)	651, 1231, 1506, 1513, 2689, 2724
BssECI	CCNNGG	6 cut(s)	588, 855, 1131, 1386, 1489, 3931
BssNI	GRCGYC	1 cut(s)	3633
BssSI	CACGAG	2 cut(s)	2367, 3452
BssT1I	CCWWGG	2 cut(s)	1131, 1489
Bst2BI	CACGAG	2 cut(s)	2367, 3452
Bst2UI	CCWGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
Bst6I	CTCTTC	2 cut(s)	1402, 2233
BstACI	GRCGYC	1 cut(s)	3633
BstAFI	CTTAAG	1 cut(s)	1369
BstAPI	GCANNNNNTGC	4 cut(s)	1436, 1795, 2146, 2717
BstAUI	TGTACA	2 cut(s)	2591, 2811
BstDSI	CCRYGG	2 cut(s)	588, 1489
BstENI	CCTNNNNNAGG	1 cut(s)	1313
BstF5I	GGATG	8 cut(s)	925, 1189, 1744, 1771, 2095, 2122, 2305, 2458
BstFNI	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
BstH2I	RGCGCY	2 cut(s)	1045, 3482
BstMAI	GTCTC	5 cut(s)	190, 1735, 2086, 2349, 3455
BstNI	CCWGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
BstNSI	RCATGY	6 cut(s)	754, 1486, 1574, 1925, 2461, 3109
BstSCI	CCNGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
BstSFI	CTRYAG	6 cut(s)	708, 1815, 2166, 2754, 2798, 3127
BstUI	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
BstV2I	GAAGAC	5 cut(s)	87, 3069, 3170, 3468, 3738
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	2649
BsuI	GTATCC	1 cut(s)	2925
BsuRI	GGCC	6 cut(s)	407, 530, 761, 2580, 3381, 3692
BsuTUI	ATCGAT	1 cut(s)	2649
BtgI	CCRYGG	2 cut(s)	588, 1489
BtrI	CACGTC	2 cut(s)	743, 1295
BtsCI	GGATG	8 cut(s)	925, 1189, 1744, 1771, 2095, 2122, 2305, 2458
BtsIMutI	CAGTG	6 cut(s)	644, 1224, 1245, 1499, 2967, 3610
BveI	ACCTGC	3 cut(s)	1597, 1948, 3509
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	4 cut(s)	695, 1321, 2557, 3691
ClaI	ATCGAT	1 cut(s)	2649
CseI	GACGC	3 cut(s)	172, 2366, 3641
CspCI	CAANNNNNGTGG	6 cut(s)	633, 668, 859, 894, 1146, 1181
DraI	TTTAAA	1 cut(s)	1140
DraIII	CACNNNGTG	2 cut(s)	1795, 2146
DrdI	GACNNNNNNGTC	1 cut(s)	3658
DseDI	GACNNNNNNGTC	1 cut(s)	3658
Eam1104I	CTCTTC	2 cut(s)	1402, 2233
EarI	CTCTTC	2 cut(s)	1402, 2233
EciI	GGCGGA	1 cut(s)	898
Eco130I	CCWWGG	2 cut(s)	1131, 1489
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	2673
Eco31I	GGTCTC	1 cut(s)	3455
Eco32I	GATATC	2 cut(s)	583, 669
Eco47I	GGWCC	3 cut(s)	695, 1321, 2557
Eco47III	AGCGCT	1 cut(s)	3480
Eco57I	CTGAAG	7 cut(s)	471, 1805, 2156, 2330, 2921, 3309, 3540
Eco88I	CYCGRG	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	1313
EcoO109I	RGGNCCY	1 cut(s)	1321
EcoRII	CCWGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
EcoRV	GATATC	2 cut(s)	583, 669
EcoT14I	CCWWGG	2 cut(s)	1131, 1489
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	2673
ErhI	CCWWGG	2 cut(s)	1131, 1489
Esp3I	CGTCTC	2 cut(s)	190, 2349
FaqI	GGGAC	2 cut(s)	442, 1917
FauI	CCCGC	6 cut(s)	432, 1610, 1661, 1961, 2012, 3289
FbaI	TGATCA	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	3098
FokI	GGATG	8 cut(s)	932, 1196, 1731, 1778, 2082, 2129, 2312, 2465
FriOI	GRGCYC	1 cut(s)	2673
FspAI	RTGCGCAY	1 cut(s)	704
FspBI	CTAG	6 cut(s)	600, 945, 1833, 2184, 3377, 3591
FspI	TGCGCA	1 cut(s)	704
GsaI	CCCAGC	2 cut(s)	1070, 3508
GsuI	CTGGAG	5 cut(s)	287, 1530, 2454, 2672, 2687
HaeII	RGCGCY	2 cut(s)	1045, 3482
HaeIII	GGCC	6 cut(s)	407, 530, 761, 2580, 3381, 3692
HgaI	GACGC	3 cut(s)	172, 2366, 3641
Hin1I	GRCGYC	1 cut(s)	3633
HincII	GTYRAC	3 cut(s)	1863, 2214, 3916
HindII	GTYRAC	3 cut(s)	1863, 2214, 3916
HindIII	AAGCTT	3 cut(s)	731, 2312, 3405
HphI	GGTGA	5 cut(s)	83, 1023, 2552, 3524, 3773
Hpy166II	GTNNAC	8 cut(s)	629, 1031, 1863, 2214, 3099, 3424, 3645, 3916
Hpy8I	GTNNAC	8 cut(s)	629, 1031, 1863, 2214, 3099, 3424, 3645, 3916
Hpy99I	CGWCG	6 cut(s)	89, 413, 2834, 3743, 3758, 3761
HpyAV	CCTTC	6 cut(s)	28, 1044, 2290, 2480, 3007, 3503
HpyCH4IV	ACGT	4 cut(s)	742, 1294, 2829, 3659
HpySE526I	ACGT	4 cut(s)	742, 1294, 2829, 3659
Hsp92I	GRCGYC	1 cut(s)	3633
KpnI	GGTACC	1 cut(s)	2903
Ksp22I	TGATCA	1 cut(s)	936
LmnI	GCTCC	9 cut(s)	117, 205, 646, 842, 1339, 1493, 2425, 2668, 3537
LweI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1756, 2107, 2698, 3026
MaeI	CTAG	6 cut(s)	600, 945, 1833, 2184, 3377, 3591
MaeII	ACGT	4 cut(s)	742, 1294, 2829, 3659
MaeIII	GTNAC	9 cut(s)	385, 1689, 2040, 2318, 2691, 3137, 3386, 3593, 3761
MbiI	CCGCTC	3 cut(s)	200, 286, 303
MfeI	CAATTG	5 cut(s)	248, 2331, 2441, 2658, 2930
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	114, 2673
MlyI	GAGTC	7 cut(s)	50, 970, 2445, 3153, 3220, 3594, 3611
MmeI	TCCRAC	7 cut(s)	24, 43, 1804, 2155, 2838, 3559, 3639
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	3 cut(s)	1288, 2650, 2868
MslI	CAYNNNNRTG	2 cut(s)	1250, 1536
MspA1I	CMGCKG	5 cut(s)	1304, 1556, 1646, 1997, 2786
MspCI	CTTAAG	1 cut(s)	1369
MspR9I	CCNGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
MunI	CAATTG	5 cut(s)	248, 2331, 2441, 2658, 2930
Mva1269I	GAATGC	2 cut(s)	1115, 2428
MvaI	CCWGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
MvnI	CGCG	6 cut(s)	183, 1617, 1968, 2360, 2562, 3623
NcoI	CCATGG	1 cut(s)	1489
NlaIV	GGNNCC	5 cut(s)	573, 906, 2558, 2670, 2901
NmeAIII	GCCGAG	1 cut(s)	1411
NmuCI	GTSAC	3 cut(s)	385, 3137, 3761
NsbI	TGCGCA	1 cut(s)	704
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	6 cut(s)	754, 1486, 1574, 1925, 2461, 3109
OliI	CACNNNNGTG	1 cut(s)	1250
PaeI	GCATGC	1 cut(s)	1486
PaeR7I	CTCGAG	1 cut(s)	632
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	761
PciI	ACATGT	3 cut(s)	1570, 1921, 2457
PcsI	WCGNNNNNNNCGW	2 cut(s)	3644, 3665
PctI	GAATGC	2 cut(s)	1115, 2428
PdmI	GAANNNNTTC	3 cut(s)	1288, 2650, 2868
PflFI	GACNNNGTC	2 cut(s)	3143, 3658
PflMI	CCANNNNNTGG	1 cut(s)	2292
PleI	GAGTC	7 cut(s)	49, 969, 2444, 3152, 3219, 3594, 3611
PpsI	GAGTC	7 cut(s)	49, 969, 2444, 3152, 3219, 3594, 3611
PpuMI	RGGWCCY	1 cut(s)	1321
PscI	ACATGT	3 cut(s)	1570, 1921, 2457
Psp5II	RGGWCCY	1 cut(s)	1321
Psp6I	CCWGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
PspFI	CCCAGC	2 cut(s)	1066, 3504
PspGI	CCWGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
PspN4I	GGNNCC	5 cut(s)	573, 906, 2558, 2670, 2901
PspPI	GGNCC	4 cut(s)	695, 1321, 2557, 3691
PspPPI	RGGWCCY	1 cut(s)	1321
PspXI	VCTCGAGB	1 cut(s)	632
PstI	CTGCAG	2 cut(s)	1819, 2170
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	2 cut(s)	3143, 3658
PvuII	CAGCTG	4 cut(s)	1304, 1646, 1997, 2786
RseI	CAYNNNNRTG	2 cut(s)	1250, 1536
Sau96I	GGNCC	4 cut(s)	695, 1321, 2557, 3691
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	7 cut(s)	50, 970, 2445, 3153, 3220, 3594, 3611
ScrFI	CCNGG	6 cut(s)	266, 857, 1039, 1353, 1853, 2204
SduI	GDGCHC	2 cut(s)	114, 2673
SfaNI	GCATC	9 cut(s)	31, 375, 436, 1100, 1108, 1756, 2107, 2698, 3026
SfcI	CTRYAG	6 cut(s)	708, 1815, 2166, 2754, 2798, 3127
Sfr274I	CTCGAG	1 cut(s)	632
SinI	GGWCC	3 cut(s)	695, 1321, 2557
SlaI	CTCGAG	1 cut(s)	632
SmiMI	CAYNNNNRTG	2 cut(s)	1250, 1536
SmlI	CTYRAG	6 cut(s)	632, 1369, 1738, 2089, 2582, 3881
SmoI	CTYRAG	6 cut(s)	632, 1369, 1738, 2089, 2582, 3881
SpeI	ACTAGT	1 cut(s)	3590
SphI	GCATGC	1 cut(s)	1486
SseBI	AGGCCT	1 cut(s)	761
SspI	AATATT	1 cut(s)	1424
SspMI	CTAG	6 cut(s)	600, 945, 1833, 2184, 3377, 3591
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	6 cut(s)	264, 855, 1037, 1351, 1851, 2202
StyI	CCWWGG	2 cut(s)	1131, 1489
TaiI	ACGT	4 cut(s)	745, 1297, 2832, 3662
TatI	WGTACW	5 cut(s)	120, 512, 1460, 2591, 2811
TauI	GCSGC	1 cut(s)	505
TscAI	CASTG	6 cut(s)	651, 1231, 1252, 1506, 2967, 3610
TseFI	GTSAC	3 cut(s)	385, 3137, 3761
Tsp45I	GTSAC	3 cut(s)	385, 3137, 3761
TspGWI	ACGGA	5 cut(s)	564, 1256, 3359, 3415, 3795
TspRI	CASTG	6 cut(s)	651, 1231, 1252, 1506, 2967, 3610
Tth111I	GACNNNGTC	2 cut(s)	3143, 3658
Van91I	CCANNNNNTGG	1 cut(s)	2292
Vha464I	CTTAAG	1 cut(s)	1369
VpaK11BI	GGWCC	3 cut(s)	695, 1321, 2557
XagI	CCTNNNNNAGG	1 cut(s)	1313
XapI	RAATTY	2 cut(s)	2805, 3819
XceI	RCATGY	6 cut(s)	754, 1486, 1574, 1925, 2461, 3109
XhoI	CTCGAG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	3098
XmnI	GAANNNNTTC	3 cut(s)	1288, 2650, 2868
XspI	CTAG	6 cut(s)	600, 945, 1833, 2184, 3377, 3591
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.