AT3G61350

Kelch motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009803
Physical Location & Seq
Forward (+)
22702632 .. 22704481
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61350.2

Sequence Viewer

Length: 1077 bp
ATGGCGTGTATAGTAGAGGATCCACAACGTGCAGGTCAATCAAATGAGACACAAATTGCACTTATAAGCGGAGTTCCTGATGATATCTCAAAATCCTGCTTAGCTAGAGTTCCAAGAGAATATCACATGGCAATGAAATGTGTTTCAAGGAGATGGAGAGATTTTGTGTGCAGTGATGAAATGTGCGACTATCGAAACGAGTTTAACTTGGCTGAATCTTGGATTTACGCGTTGTGCCGCGACATATCTGGCGGTGTCTTCTTACACATGCTGAATCCGTTCTCGTCCAGAAGGTCATGGAAAAGAATCAATGATTATCCATATATCCCAATGAGAGAAGGCATGGGTTTTGCAGTATTGGGTAAGAGACTGTTTGTGTTGGGTGGATGTGGTTGGTTAGAAGATGCTACTGATGAGATTTATTGCTATGATGCTGCTATGAACACTTGGTTTGACGTAGTACCTCCTCTTTCAACTAAAAGATGCTACTTTGCTTGTGAAACGCTGGATGGAAAAATTATTGCAATTGGTGGGTTAGGATTGAATCCAAACGCTAAACGAACTTGGGACATCTATGATCCTTTGACCAGAACCTGCAAATCTTGTTCTGATGTGAATATTGTCCCTGAAATGGAAGATTCATTTGTAATGGATGGAAGGATTTATATTCGGGGTGGTGTTGGAGGATCTTCCACTGCAGTCTATAGTGCATCTAGCGGGATTTGGGAACGTATGGATGATGATATGGCATCAGGATGGCGAGGTCCAGCAGTTGTTGTGGCAGGTGATCTCTATGTTTTGGATCAGACTTTTGGAGCTAAGCTAACAATGTGGTGCAAGGATACGAGAATGTGGATTCATATCGGGAAGCTATCTCAATTGGTGATGAAGCAGCCTTGTCGGCTTGTATCTATTGGGAATAGTATCTTTGTGATTGGTAAGGATTGCTCTACTGTGGTAATTGATGTTGAGAATGTGAGGAAGAATAAGATGAATGGAGTAATGGTGTGTTCTTCTATACCAAAGACTTGGGATGATGATATAGATGTTATTAGCTGTAAATCTGTAGCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

358

Amino Acids

40.12

Weight (kDa)

5.57

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 1.6e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 96 - 245 4.2e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 97 - 247 1e-07 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 98 - 313 9.3e-16 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AarI CACCTGC 1 cut(s) 773
Acc36I ACCTGC 3 cut(s) 23, 602, 773
AccII CGCG 2 cut(s) 230, 240
AciI CCGC 4 cut(s) 69, 238, 252, 717
AclWI GGATC 5 cut(s) 14, 27, 572, 694, 810
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 3 cut(s) 147, 474, 544
AluBI AGCT 5 cut(s) 104, 818, 823, 871, 1056
AluI AGCT 5 cut(s) 104, 818, 823, 871, 1056
Alw26I GTCTC 2 cut(s) 41, 361
AlwI GGATC 5 cut(s) 14, 27, 572, 694, 810
AlwNI CAGNNNCTG 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 434, 892
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 797, 895
AvaII GGWCC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 421, 904
BccI CCATC 4 cut(s) 147, 503, 647, 750
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciVI GTATCC 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 41, 361
BfaI CTAG 2 cut(s) 105, 714
BfmI CTRYAG 3 cut(s) 696, 703, 1065
BfuAI ACCTGC 3 cut(s) 23, 602, 773
BfuI GTATCC 1 cut(s) 835
BglI GCCNNNNNGGC 1 cut(s) 901
BisI GCNGC 3 cut(s) 238, 435, 893
BlpI GCTNAGC 2 cut(s) 100, 819
BlsI GCNGC 3 cut(s) 239, 436, 894
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 5 cut(s) 394, 421, 473, 719, 758
BpiI GAAGAC 1 cut(s) 250
Bpu1102I GCTNAGC 2 cut(s) 100, 819
BsaBI GATNNNNATC 1 cut(s) 860
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 860
BseGI GGATG 6 cut(s) 392, 514, 658, 742, 761, 1039
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 421, 904
BsgI GTGCAG 2 cut(s) 51, 190
Bsh1236I CGCG 2 cut(s) 230, 240
BslFI GGGAC 2 cut(s) 581, 608
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 2 cut(s) 41, 361
BsmFI GGGAC 2 cut(s) 581, 608
Bsp143I GATC 5 cut(s) 19, 577, 686, 787, 802
Bsp1720I GCTNAGC 2 cut(s) 100, 819
BspACI CCGC 4 cut(s) 69, 238, 252, 717
BspFNI CGCG 2 cut(s) 230, 240
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 3 cut(s) 23, 602, 773
BspPI GGATC 5 cut(s) 14, 27, 572, 694, 810
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 5 cut(s) 19, 577, 686, 787, 802
Bst4CI ACNGT 2 cut(s) 372, 955
BstDEI CTNAG 2 cut(s) 100, 819
BstF5I GGATG 6 cut(s) 392, 514, 658, 742, 761, 1039
BstFNI CGCG 2 cut(s) 230, 240
BstKTI GATC 5 cut(s) 22, 580, 689, 790, 805
BstMAI GTCTC 2 cut(s) 41, 361
BstMBI GATC 5 cut(s) 19, 577, 686, 787, 802
BstMWI GCNNNNNNNGC 1 cut(s) 901
BstNSI RCATGY 1 cut(s) 271
BstSFI CTRYAG 3 cut(s) 696, 703, 1065
BstUI CGCG 2 cut(s) 230, 240
BstV1I GCAGC 2 cut(s) 421, 904
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 19, 686
BstXI CCANNNNNNTGG 1 cut(s) 1029
BstYI RGATCY 2 cut(s) 19, 686
BsuI GTATCC 1 cut(s) 835
BtsCI GGATG 6 cut(s) 392, 514, 658, 742, 761, 1039
BtsI GCAGTG 2 cut(s) 178, 693
BtsIMutI CAGTG 2 cut(s) 178, 693
BveI ACCTGC 3 cut(s) 23, 602, 773
CaiI CAGNNNCTG 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 764
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 127, 268, 297, 343
CviJI RGCY 9 cut(s) 104, 212, 818, 823, 871, 895, 904, 1056, 1070
CviKI_1 RGCY 9 cut(s) 104, 212, 818, 823, 871, 895, 904, 1056, 1070
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 2 cut(s) 100, 819
DpnI GATC 5 cut(s) 21, 579, 688, 789, 804
DpnII GATC 5 cut(s) 19, 577, 686, 787, 802
DraIII CACNNNGTG 1 cut(s) 29
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 764
EcoRV GATATC 1 cut(s) 85
FaeI CATG 4 cut(s) 130, 271, 300, 346
FaqI GGGAC 2 cut(s) 581, 608
FatI CATG 4 cut(s) 126, 267, 296, 342
FauI CCCGC 1 cut(s) 710
Fnu4HI GCNGC 3 cut(s) 238, 435, 893
FokI GGATG 6 cut(s) 399, 521, 665, 749, 768, 1046
Fsp4HI GCNGC 3 cut(s) 238, 435, 893
FspBI CTAG 2 cut(s) 105, 714
GluI GCNGC 3 cut(s) 238, 435, 893
Hin1II CATG 4 cut(s) 130, 271, 300, 346
HinfI GANTC 6 cut(s) 215, 274, 306, 544, 638, 856
HphI GGTGA 2 cut(s) 797, 895
Hpy188I TCNGA 2 cut(s) 610, 807
Hpy188III TCNNGA 4 cut(s) 77, 288, 753, 865
HpyAV CCTTC 3 cut(s) 285, 332, 651
HpyCH4III ACNGT 2 cut(s) 372, 955
HpyCH4IV ACGT 3 cut(s) 28, 456, 730
HpyCH4V TGCA 9 cut(s) 32, 59, 171, 353, 524, 597, 698, 710, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 901
HpyF3I CTNAG 2 cut(s) 100, 819
HpySE526I ACGT 3 cut(s) 28, 456, 730
Hsp92II CATG 4 cut(s) 130, 271, 300, 346
Kzo9I GATC 5 cut(s) 19, 577, 686, 787, 802
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 2 cut(s) 421, 904
LweI GCATC 5 cut(s) 394, 421, 473, 719, 758
MaeI CTAG 2 cut(s) 105, 714
MaeII ACGT 3 cut(s) 28, 456, 730
MalI GATC 5 cut(s) 21, 579, 688, 789, 804
MboI GATC 5 cut(s) 19, 577, 686, 787, 802
MboII GAAGA 6 cut(s) 250, 413, 647, 681, 994, 1005
MfeI CAATTG 2 cut(s) 525, 878
MflI RGATCY 2 cut(s) 19, 686
MluCI AATT 5 cut(s) 54, 516, 525, 878, 960
MluI ACGCGT 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 6 cut(s) 10, 474, 477, 677, 755, 972
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 131, 754
MunI CAATTG 2 cut(s) 525, 878
MvnI CGCG 2 cut(s) 230, 240
MwoI GCNNNNNNNGC 1 cut(s) 901
NdeII GATC 5 cut(s) 19, 577, 686, 787, 802
NlaIII CATG 4 cut(s) 130, 271, 300, 346
NlaIV GGNNCC 1 cut(s) 21
NspI RCATGY 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 773
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 6 cut(s) 215, 274, 306, 544, 638, 856
PkrI GCNGC 3 cut(s) 239, 436, 894
PsiI TTATAA 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 764
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 594
PsuI RGATCY 2 cut(s) 19, 686
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 2 cut(s) 131, 754
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 238, 435, 893
Sau3AI GATC 5 cut(s) 19, 577, 686, 787, 802
Sau96I GGNCC 1 cut(s) 764
SfaNI GCATC 5 cut(s) 394, 421, 473, 719, 758
SfcI CTRYAG 3 cut(s) 696, 703, 1065
SinI GGWCC 1 cut(s) 764
SmiMI CAYNNNNRTG 2 cut(s) 131, 754
Sse9I AATT 5 cut(s) 54, 516, 525, 878, 960
SsiI CCGC 4 cut(s) 69, 238, 252, 717
SspI AATATT 1 cut(s) 619
SspMI CTAG 2 cut(s) 105, 714
TaaI ACNGT 2 cut(s) 372, 955
TaiI ACGT 3 cut(s) 31, 459, 733
TaqI TCGA 1 cut(s) 193
TasI AATT 5 cut(s) 54, 516, 525, 878, 960
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 6 cut(s) 215, 274, 306, 544, 638, 856
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 178, 700
TseI GCWGC 2 cut(s) 434, 892
TspDTI ATGAA 7 cut(s) 149, 192, 455, 630, 848, 902, 1007
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 178, 700
VpaK11BI GGWCC 1 cut(s) 764
XceI RCATGY 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 105, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.