Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009803

Physical Location & Seq

Genomic Coordinates Reverse (-)

16295893 .. 16297319

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1058900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTAAAGTGGCAGCTACTGTTGCAGCGTCACCTATTGATGGTAAAATTGGTTGTATTAGTTTTACAGAAAGAAGAAGGGTCTGTCCACCAGCAAGCAACAATGCCATCTGTGCCTGTTCCAGATACGCTTCTGTCGATGGAAGAACTACATGAAAAACGTTTGCTTGATCCGCATCTTCCAAGGACATACCAAATCAAGGCAGCTGCAATGAAATTTGTGCCTTGGCTTATAGATCAACCGCTCAGACTAAATCCCCACCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

90

Amino Acids

10.4

Weight (kDa)

9.22

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61350 AT3G61350
fragaria_vesca	FvH4_7g14191
malus_domestica	MD01G1058200.v1.1 MD01G1058900.v1.1
prunus_persica	Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1
pyrus_communis	pycom01g08780 pycom07g13570
rosa_chinensis	RchiOBHm_Chr1g0355111
rosa_laevigata	RLG00000028176
rosa_multiflora	Rmu_sc0003115.1_g000034 Rmu_sc0016725.1_g000007 Rmu_sc0043066.1_g000001
rosa_samantha	Rh1AG257400 Rh1AG257500 Rh3BG328500
rosa_wichuraiana	Rw0G011240 Rw1G022710 Rw1G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	2 cut(s)	173, 242
AclI	AACGTT	1 cut(s)	160
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	40, 199
AluBI	AGCT	2 cut(s)	16, 206
AluI	AGCT	2 cut(s)	16, 206
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	4 cut(s)	13, 25, 203, 206
ApoI	RAATTY	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	25, 37, 193, 215
BccI	CCATC	3 cut(s)	34, 115, 133
BisI	GCNGC	4 cut(s)	14, 26, 204, 207
BlsI	GCNGC	4 cut(s)	15, 27, 205, 208
BmsI	GCATC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	182, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 199
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	182, 224
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	40, 199
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	25, 37, 193, 215
BslI	CCNNNNNNNGG	2 cut(s)	40, 199
Bsp143I	GATC	2 cut(s)	169, 235
BspACI	CCGC	2 cut(s)	173, 242
BspCNI	CTCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	182, 224
BssMI	GATC	2 cut(s)	169, 235
BssT1I	CCWWGG	2 cut(s)	182, 224
Bst4CI	ACNGT	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	245
BstKTI	GATC	2 cut(s)	172, 238
BstMBI	GATC	2 cut(s)	169, 235
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 22, 112, 172
BstV1I	GCAGC	4 cut(s)	25, 37, 193, 215
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	19
CseI	GACGC	1 cut(s)	17
CspCI	CAANNNNNGTGG	1 cut(s)	248
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	16, 206, 229
CviKI_1	RGCY	3 cut(s)	16, 206, 229
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	171, 237
DpnII	GATC	2 cut(s)	169, 235
Eco130I	CCWWGG	2 cut(s)	182, 224
EcoT14I	CCWWGG	2 cut(s)	182, 224
ErhI	CCWWGG	2 cut(s)	182, 224
FaeI	CATG	1 cut(s)	155
FaiI	YATR	3 cut(s)	153, 190, 233
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	14, 26, 204, 207
Fsp4HI	GCNGC	4 cut(s)	14, 26, 204, 207
GluI	GCNGC	4 cut(s)	14, 26, 204, 207
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	25, 209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 22, 112, 172
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	169, 235
LpnPI	CCDG	3 cut(s)	104, 129, 135
Lsp1109I	GCAGC	4 cut(s)	25, 37, 193, 215
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	171, 237
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	169, 235
MboII	GAAGA	3 cut(s)	86, 155, 170
MluCI	AATT	2 cut(s)	47, 215
MspA1I	CMGCKG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	10, 22, 112, 172
NdeII	GATC	2 cut(s)	169, 235
NlaIII	CATG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	15, 27, 205, 208
Psp1406I	AACGTT	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	206
SatI	GCNGC	4 cut(s)	14, 26, 204, 207
Sau3AI	GATC	2 cut(s)	169, 235
SetI	ASST	4 cut(s)	18, 36, 163, 208
SfaNI	GCATC	1 cut(s)	184
SgeI	CNNG	9 cut(s)	103, 107, 128, 134, 164, 179, 195, 211, 237
Sse9I	AATT	2 cut(s)	47, 215
SsiI	CCGC	2 cut(s)	173, 242
StyI	CCWWGG	2 cut(s)	182, 224
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	47, 215
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	4 cut(s)	13, 25, 203, 206
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	168, 227
XapI	RAATTY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.