Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009803

Physical Location & Seq

Genomic Coordinates Reverse (-)

21701412 .. 21704215

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGACCAGCCAGGTGTTGTATCAGAGGGGATCAGTCAAATGGAACTGAGCCAACAGTTTCTTATATCTGGCCTTCCAGATGACATTGCTCTCTTTTGCCTGGCTAGGGTTCCCCGGAAGTATCATGGACTCCTAAAGTGTGTTTCAAAAAGATGGAGAGACTTAGTGTGTAGTGAAGAGTGGCATTCTTACCGTCAAAAGCATAAATTTGATGAGACTTGGATCTACGCTTTGTGTCGAGACAAGTTGGACCGACTTTGCTGTTATGTGTTGGATCCCAACTCATCAAGAAGGTCATGGAAGCTTGTTCATGGACTTCCGTCTTGCGTCTTGAAGAGAAAAGGCATGGGTTTTGAAGTGCTGGGAAACAAAGTTTACCTGTTGGGTGGTTGTGGTTGGTGTGAAGATGCTACTGGCGAGGTCTACTGTTATGACGCTTCCCTGAACGCTTGGAGTGAAGCTTCTCCATTATCCACTGCTAGGTGCTATTTCGCCTGTGAAGTATTGGATGGAAAAATATATTCCATTGGCGGTTTAGGTTCAAATTCAAGTGATCCACATTCTTGGGACATCTATGACCCTTGCACCAATAGTTGGAAATTTCACGCTGACCCAAACATTGTCCCTGAAATTGAGGATTCTGTGGTCATGGATGGGAAGATCTACATTCACTGCGGGACTTCTGCTGTAACTTCTCATGTGTACGCTGTTGTTTATGAACCATCAAGTGGCACATGGCAGCATGCAGATGCCGACATGGTTGCCGGCTGGCGGGGTCCAGCAGTTGTCGTAGATGGGACCCTCTATGTGTTGGATCAGAGTTCAGGAACCAGGCTGATGATGTGGCAAAAGGAGTCTAGGGAGTGGATTCCTGTTGGGAGGCTGTCATCCTTGCTCACCAGGCCGCCCTGTCAACTTGTAGCTATTGGGAAGAAATTTTACGTTGTAGGAAAGGGGCTTAGCACAGTCATGTTTGATGTTGAGAATGCAGGGAATATGGAAGGGGTGATGGTTAGTTCTTCAATACCTAAATTGAATTCTGATGATGATGTAATCAGCTGTAAATGTTTATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

360

Amino Acids

39.98

Weight (kDa)

5.74

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61350 AT3G61350
fragaria_vesca	FvH4_7g14191
malus_domestica	MD01G1058200.v1.1 MD01G1058900.v1.1
prunus_persica	Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1
pyrus_communis	pycom01g08780 pycom07g13570
rosa_chinensis	RchiOBHm_Chr1g0355111
rosa_laevigata	RLG00000028176
rosa_multiflora	Rmu_sc0003115.1_g000034 Rmu_sc0016725.1_g000007 Rmu_sc0043066.1_g000001
rosa_samantha	Rh1AG257400 Rh1AG257500 Rh3BG328500
rosa_wichuraiana	Rw0G011240 Rw1G022710 Rw1G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	594, 728
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	4 cut(s)	531, 675, 772, 905
AclWI	GGATC	6 cut(s)	38, 230, 269, 282, 548, 822
AcsI	RAATTY	5 cut(s)	206, 544, 599, 935, 1036
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	5 cut(s)	106, 480, 594, 728, 771
AgsI	TTSAA	7 cut(s)	147, 334, 356, 543, 549, 1023, 1036
AjnI	CCWGG	4 cut(s)	10, 99, 830, 899
AluBI	AGCT	4 cut(s)	304, 461, 923, 1059
AluI	AGCT	4 cut(s)	304, 461, 923, 1059
Alw26I	GTCTC	3 cut(s)	153, 209, 234
AlwI	GGATC	6 cut(s)	38, 230, 269, 282, 548, 822
AoxI	GGCC	2 cut(s)	70, 902
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	5 cut(s)	206, 544, 599, 935, 1036
AspS9I	GGNCC	4 cut(s)	4, 250, 776, 798
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	889, 1018
AvaII	GGWCC	4 cut(s)	4, 250, 776, 798
BamHI	GGATCC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	923, 955
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	6 cut(s)	147, 503, 647, 730, 788, 1003
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	4 cut(s)	12, 101, 832, 901
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	3 cut(s)	153, 209, 234
BfaI	CTAG	3 cut(s)	105, 480, 858
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	2 cut(s)	740, 905
BlpI	GCTNAGC	1 cut(s)	959
BlsI	GCNGC	2 cut(s)	741, 906
Bme1390I	CCNGG	5 cut(s)	12, 101, 115, 832, 901
Bme18I	GGWCC	4 cut(s)	4, 250, 776, 798
BmgT120I	GGNCC	4 cut(s)	4, 250, 776, 798
BmiI	GGNNCC	6 cut(s)	111, 276, 777, 799, 800, 829
BmrFI	CCNGG	5 cut(s)	12, 101, 115, 832, 901
BmsI	GCATC	2 cut(s)	397, 739
BoxI	GACNNNNGTC	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	959
BpuMI	CCSGG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 480, 594, 728, 771
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	4 cut(s)	12, 101, 832, 901
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	3 cut(s)	514, 658, 887
BseLI	CCNNNNNNNGG	5 cut(s)	106, 480, 594, 728, 771
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	751
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	72, 904
BsiSI	CCGG	2 cut(s)	115, 765
BslFI	GGGAC	4 cut(s)	581, 608, 691, 811
BslI	CCNNNNNNNGG	5 cut(s)	106, 480, 594, 728, 771
BsmAI	GTCTC	3 cut(s)	153, 209, 234
BsmFI	GGGAC	4 cut(s)	581, 608, 691, 811
BsmI	GAATGC	2 cut(s)	184, 991
BsnI	GGCC	2 cut(s)	72, 904
Bsp143I	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
Bsp1720I	GCTNAGC	1 cut(s)	959
BspACI	CCGC	4 cut(s)	531, 675, 772, 905
BspANI	GGCC	2 cut(s)	72, 904
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	6 cut(s)	111, 276, 777, 799, 800, 829
BspPI	GGATC	6 cut(s)	38, 230, 269, 282, 548, 822
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
Bst2UI	CCWGG	4 cut(s)	12, 101, 832, 901
Bst4CI	ACNGT	4 cut(s)	57, 194, 428, 967
Bst6I	CTCTTC	2 cut(s)	171, 329
BstC8I	GCNNGC	3 cut(s)	744, 766, 770
BstDEI	CTNAG	3 cut(s)	47, 163, 959
BstF5I	GGATG	3 cut(s)	514, 658, 887
BstKTI	GATC	6 cut(s)	33, 225, 277, 556, 663, 817
BstMAI	GTCTC	3 cut(s)	153, 209, 234
BstMBI	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	901
BstNI	CCWGG	4 cut(s)	12, 101, 832, 901
BstNSI	RCATGY	1 cut(s)	746
BstPAI	GACNNNNGTC	1 cut(s)	319
BstSCI	CCNGG	5 cut(s)	10, 99, 113, 830, 899
BstV1I	GCAGC	1 cut(s)	751
BstX2I	RGATCY	3 cut(s)	222, 274, 660
BstXI	CCANNNNNNTGG	1 cut(s)	564
BstYI	RGATCY	3 cut(s)	222, 274, 660
BsuRI	GGCC	2 cut(s)	72, 904
BtsCI	GGATG	3 cut(s)	514, 658, 887
BtsI	GCAGTG	2 cut(s)	474, 670
BtsIMutI	CAGTG	2 cut(s)	474, 670
Cac8I	GCNNGC	3 cut(s)	744, 766, 770
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	4 cut(s)	4, 250, 776, 798
CseI	GACGC	2 cut(s)	316, 443
Csp6I	GTAC	1 cut(s)	703
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	3 cut(s)	47, 163, 959
DpnI	GATC	6 cut(s)	32, 224, 276, 555, 662, 816
DpnII	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
Eam1104I	CTCTTC	2 cut(s)	171, 329
EarI	CTCTTC	2 cut(s)	171, 329
Eco47I	GGWCC	4 cut(s)	4, 250, 776, 798
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	4 cut(s)	10, 99, 830, 899
FaqI	GGGAC	4 cut(s)	581, 608, 691, 811
FauI	CCCGC	2 cut(s)	668, 765
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	740, 905
FokI	GGATG	3 cut(s)	521, 665, 874
Fsp4HI	GCNGC	2 cut(s)	740, 905
FspBI	CTAG	3 cut(s)	105, 480, 858
GluI	GCNGC	2 cut(s)	740, 905
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	72, 904
HapII	CCGG	2 cut(s)	115, 765
HgaI	GACGC	2 cut(s)	316, 443
HincII	GTYRAC	1 cut(s)	914
HindII	GTYRAC	1 cut(s)	914
HindIII	AAGCTT	2 cut(s)	302, 459
HinfI	GANTC	4 cut(s)	129, 638, 854, 868
HpaII	CCGG	2 cut(s)	115, 765
HphI	GGTGA	2 cut(s)	889, 1018
Hpy166II	GTNNAC	4 cut(s)	376, 424, 703, 914
Hpy188I	TCNGA	3 cut(s)	25, 819, 1042
Hpy188III	TCNNGA	5 cut(s)	77, 239, 288, 331, 825
Hpy8I	GTNNAC	4 cut(s)	376, 424, 703, 914
HpyAV	CCTTC	3 cut(s)	83, 285, 995
HpyCH4III	ACNGT	4 cut(s)	57, 194, 428, 967
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	3 cut(s)	585, 746, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	901
HpyF3I	CTNAG	3 cut(s)	47, 163, 959
HpySE526I	ACGT	1 cut(s)	942
KflI	GGGWCCC	1 cut(s)	798
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	2 cut(s)	397, 739
MaeI	CTAG	3 cut(s)	105, 480, 858
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	6 cut(s)	32, 224, 276, 555, 662, 816
MboI	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
MboII	GAAGA	6 cut(s)	188, 346, 416, 670, 943, 1011
MflI	RGATCY	3 cut(s)	222, 274, 660
MluCI	AATT	8 cut(s)	206, 544, 599, 630, 935, 1031, 1036, 1074
MlyI	GAGTC	2 cut(s)	123, 863
MmeI	TCCRAC	4 cut(s)	228, 252, 575, 792
MnlI	CCTC	5 cut(s)	19, 412, 628, 812, 873
MroNI	GCCGGC	1 cut(s)	764
MslI	CAYNNNNRTG	2 cut(s)	747, 968
MspA1I	CMGCKG	1 cut(s)	1059
MspI	CCGG	2 cut(s)	115, 765
MspR9I	CCNGG	5 cut(s)	12, 101, 115, 832, 901
Mva1269I	GAATGC	2 cut(s)	184, 991
MvaI	CCWGG	4 cut(s)	12, 101, 832, 901
MwoI	GCNNNNNNNGC	1 cut(s)	901
NaeI	GCCGGC	1 cut(s)	766
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
NgoMIV	GCCGGC	1 cut(s)	764
NlaIV	GGNNCC	6 cut(s)	111, 276, 777, 799, 800, 829
NspI	RCATGY	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	746
PctI	GAATGC	2 cut(s)	184, 991
PdiI	GCCGGC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	638, 868
PflMI	CCANNNNNTGG	2 cut(s)	594, 728
PkrI	GCNGC	2 cut(s)	741, 906
PleI	GAGTC	2 cut(s)	123, 862
PpsI	GAGTC	2 cut(s)	123, 862
PpuMI	RGGWCCY	1 cut(s)	798
PshAI	GACNNNNGTC	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	798
Psp6I	CCWGG	4 cut(s)	10, 99, 830, 899
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	4 cut(s)	10, 99, 830, 899
PspN4I	GGNNCC	6 cut(s)	111, 276, 777, 799, 800, 829
PspPI	GGNCC	4 cut(s)	4, 250, 776, 798
PspPPI	RGGWCCY	1 cut(s)	798
PsuI	RGATCY	3 cut(s)	222, 274, 660
PvuII	CAGCTG	1 cut(s)	1059
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
RseI	CAYNNNNRTG	2 cut(s)	747, 968
SatI	GCNGC	2 cut(s)	740, 905
Sau3AI	GATC	6 cut(s)	30, 222, 274, 553, 660, 814
Sau96I	GGNCC	4 cut(s)	4, 250, 776, 798
SchI	GAGTC	2 cut(s)	123, 863
ScrFI	CCNGG	5 cut(s)	12, 101, 115, 832, 901
SfaNI	GCATC	2 cut(s)	397, 739
SinI	GGWCC	4 cut(s)	4, 250, 776, 798
SmiMI	CAYNNNNRTG	2 cut(s)	747, 968
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	8 cut(s)	206, 544, 599, 630, 935, 1031, 1036, 1074
SsiI	CCGC	4 cut(s)	531, 675, 772, 905
SspMI	CTAG	3 cut(s)	105, 480, 858
StyD4I	CCNGG	5 cut(s)	10, 99, 113, 830, 899
TaaI	ACNGT	4 cut(s)	57, 194, 428, 967
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	1 cut(s)	238
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	8 cut(s)	206, 544, 599, 630, 935, 1031, 1036, 1074
TauI	GCSGC	1 cut(s)	907
TfiI	GAWTC	2 cut(s)	638, 868
TscAI	CASTG	2 cut(s)	481, 677
TseI	GCWGC	1 cut(s)	739
TspDTI	ATGAA	2 cut(s)	299, 732
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	481, 677
Van91I	CCANNNNNTGG	2 cut(s)	594, 728
VpaK11BI	GGWCC	4 cut(s)	4, 250, 776, 798
XapI	RAATTY	5 cut(s)	206, 544, 599, 935, 1036
XceI	RCATGY	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	3 cut(s)	105, 480, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.