FvH4_7g14191

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009803
Physical Location & Seq
Reverse (-)
12557875 .. 12560293
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14191.t1

Sequence Viewer

Length: 1080 bp
ATGGAACTGCATGGTGATAGAACAGATGGGACCAGTCAAATGGAACCGGTCCAACAGCCACTTATATCTGGAATTCCTGATGATATTGCTCTTTTCTGCATGGCAAGGGTTCCTCGAAAGTACCATACAGTCCTAAAGTGTGTTTCAAGAAGATGGCGGCACTTGGTGGGCAGTGAAGAGTGGCATTCCTACCGTCGAAAGCATACACTTGACGAGACTTGGATCTATGCTTTGTGCCGAGACAAGTTGGAGCGTGTTTGCTTGTATGTGTTGGATCCAAACTCAGCAAGAAGGAGTTGGAAGCTTGTTAATGAGCTTCCACCTCGCACCTTGAAGAGAAAAGGCATGGGTTTTGAAGTGCTAGGAAAGAAAATTTACTTGTTGGGTGGTTGTGGTTGGTGTGAAGATGCTACAGATGAGGTCTACTACTATGATGCTTCCCTGAACACTTGGAGTGAAGCTGCTCCCTTATCTACCGCTAGGTGCTATTTCGCCTGTGAAGTATTGGATGAGAAAATATATTCCATTGGTGGATTAGGTTCAAATTCAAGTGATCCACATTCTTGGGACATTTATGATCCTAGCACGAATAGTTGGATATTTCATTCTGACGCAAACATTGTTCCTGAAATTGAGGATTCTGTGGTCATGGATGGGAAAATCTACATTCGGTGTGGCACTTCTGCTGTAACTTCTCATGTCTATGCTGTTGTTTATGAACCATCAAGCGGTACATGGCAGCATGCAGACGCTGATATGGTTTCTGGCTGGCGAGGTCCAGCAGTTGTAATAGGCGGGACCCTGTATGTATTGGATCAGAGCTCAGGAACTAGGCTGATGATGTGGCAGAAGGAGACTAGGGAATGGATACCAGTCGGGAGGCTGTCATCCTTGCTTACCAGACCACCCTGTCAACTCGTAGCTGTTGGGAAGAGTATTTATGTTGTTGGAAAGGGGCTTAGCACAGTCATGTTTGATGTTGAAAATGCAGGGAATATGGAAGGGGTAATTGTGAGTTCTTCAATACCTAGATTGAATTCTGATGATGATGTAATCAGCTGTAAATGTTTGTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

360

Amino Acids

40.27

Weight (kDa)

5.75

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 8.9e-07 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 45 - 199 1.4e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 88 - 250 2.7e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 94 - 271 4.3e-09 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 96 - 199 9.7e-06 FBX42, beta-propeller domain
Beta-prop_Calicin PF13964 100 - 273 2e-09 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 107 - 300 2.3e-26 FKB95, Kelch-repeats domain
Kelch_1 PF01344 113 - 157 4.2e-08 Kelch motif
Kelch_1 PF01344 160 - 199 7.5e-07 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 909
AccI GTMKAC 1 cut(s) 423
AciI CCGC 4 cut(s) 157, 477, 729, 795
AclWI GGATC 6 cut(s) 230, 269, 282, 548, 572, 822
AcsI RAATTY 4 cut(s) 72, 372, 544, 1036
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 2 cut(s) 122, 733
AfiI CCNNNNNNNGG 1 cut(s) 728
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 8 cut(s) 147, 334, 356, 543, 549, 983, 1023, 1036
AluBI AGCT 6 cut(s) 304, 316, 461, 822, 923, 1059
AluI AGCT 6 cut(s) 304, 316, 461, 822, 923, 1059
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 3 cut(s) 209, 234, 848
AlwI GGATC 6 cut(s) 230, 269, 282, 548, 572, 822
AlwNI CAGNNNCTG 1 cut(s) 752
ApeKI GCWGC 2 cut(s) 461, 739
ApoI RAATTY 4 cut(s) 72, 372, 544, 1036
AsiGI ACCGGT 1 cut(s) 46
AspS9I GGNCC 4 cut(s) 30, 49, 776, 798
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 4 cut(s) 30, 49, 776, 798
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 448, 751
BccI CCATC 4 cut(s) 20, 147, 647, 730
BciVI GTATCC 1 cut(s) 861
BcoDI GTCTC 3 cut(s) 209, 234, 848
BfaI CTAG 6 cut(s) 362, 480, 582, 831, 858, 1029
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 861
BisI GCNGC 3 cut(s) 158, 462, 740
BlpI GCTNAGC 1 cut(s) 959
BlsI GCNGC 3 cut(s) 159, 463, 741
Bme18I GGWCC 4 cut(s) 30, 49, 776, 798
BmgT120I GGNCC 4 cut(s) 30, 49, 776, 798
BmiI GGNNCC 6 cut(s) 31, 45, 111, 276, 799, 800
BmsI GCATC 2 cut(s) 397, 424
Bpu10I CCTNAGC 1 cut(s) 823
Bpu1102I GCTNAGC 1 cut(s) 959
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 33, 872
BseGI GGATG 3 cut(s) 514, 658, 887
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 297, 837
BseNI ACTGG 2 cut(s) 33, 872
BseXI GCAGC 2 cut(s) 448, 751
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 3 cut(s) 43, 581, 811
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 3 cut(s) 209, 234, 848
BsmFI GGGAC 3 cut(s) 43, 581, 811
BsmI GAATGC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 824
Bsp143I GATC 5 cut(s) 222, 274, 553, 577, 814
Bsp1720I GCTNAGC 1 cut(s) 959
BspACI CCGC 4 cut(s) 157, 477, 729, 795
BspCNI CTCAG 2 cut(s) 296, 836
BspLI GGNNCC 6 cut(s) 31, 45, 111, 276, 799, 800
BspPI GGATC 6 cut(s) 230, 269, 282, 548, 572, 822
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 33, 872
BssAI RCCGGY 1 cut(s) 46
BssMI GATC 5 cut(s) 222, 274, 553, 577, 814
Bst4CI ACNGT 3 cut(s) 130, 194, 967
Bst6I CTCTTC 3 cut(s) 171, 329, 926
BstC8I GCNNGC 2 cut(s) 744, 770
BstDEI CTNAG 3 cut(s) 283, 823, 959
BstF5I GGATG 3 cut(s) 514, 658, 887
BstKTI GATC 5 cut(s) 225, 277, 556, 580, 817
BstMAI GTCTC 3 cut(s) 209, 234, 848
BstMBI GATC 5 cut(s) 222, 274, 553, 577, 814
BstNSI RCATGY 1 cut(s) 746
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 448, 751
BstX2I RGATCY 2 cut(s) 222, 274
BstXI CCANNNNNNTGG 2 cut(s) 40, 564
BstYI RGATCY 2 cut(s) 222, 274
BsuI GTATCC 1 cut(s) 861
BtsCI GGATG 3 cut(s) 514, 658, 887
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 744, 770
CaiI CAGNNNCTG 1 cut(s) 752
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 4 cut(s) 30, 49, 776, 798
CseI GACGC 2 cut(s) 620, 758
Csp6I GTAC 2 cut(s) 121, 732
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 8 cut(s) 11, 100, 346, 649, 698, 735, 743, 970
CviQI GTAC 2 cut(s) 121, 732
DdeI CTNAG 3 cut(s) 283, 823, 959
DpnI GATC 5 cut(s) 224, 276, 555, 579, 816
DpnII GATC 5 cut(s) 222, 274, 553, 577, 814
DraIII CACNNNGTG 1 cut(s) 166
DrdI GACNNNNNNGTC 1 cut(s) 909
DseDI GACNNNNNNGTC 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 171, 329, 926
EarI CTCTTC 3 cut(s) 171, 329, 926
Ecl136II GAGCTC 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 824
Eco47I GGWCC 4 cut(s) 30, 49, 776, 798
Eco53kI GAGCTC 1 cut(s) 822
EcoICRI GAGCTC 1 cut(s) 822
EcoO109I RGGNCCY 1 cut(s) 798
EcoRI GAATTC 2 cut(s) 72, 1036
EcoT38I GRGCYC 1 cut(s) 824
FaeI CATG 8 cut(s) 14, 103, 349, 652, 701, 738, 746, 973
FaqI GGGAC 3 cut(s) 43, 581, 811
FatI CATG 8 cut(s) 10, 99, 345, 648, 697, 734, 742, 969
FauI CCCGC 1 cut(s) 788
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 158, 462, 740
FokI GGATG 3 cut(s) 521, 665, 874
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 3 cut(s) 158, 462, 740
FspBI CTAG 6 cut(s) 362, 480, 582, 831, 858, 1029
GluI GCNGC 3 cut(s) 158, 462, 740
HapII CCGG 1 cut(s) 47
HgaI GACGC 2 cut(s) 620, 758
Hin1II CATG 8 cut(s) 14, 103, 349, 652, 701, 738, 746, 973
HincII GTYRAC 1 cut(s) 914
HindII GTYRAC 1 cut(s) 914
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 638
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 424, 914
Hpy188I TCNGA 3 cut(s) 610, 819, 1042
Hpy188III TCNNGA 6 cut(s) 69, 77, 147, 626, 825, 877
Hpy8I GTNNAC 2 cut(s) 424, 914
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 3 cut(s) 285, 844, 995
HpyCH4III ACNGT 3 cut(s) 130, 194, 967
HpyCH4V TGCA 4 cut(s) 10, 99, 746, 989
HpyF3I CTNAG 3 cut(s) 283, 823, 959
Hsp92II CATG 8 cut(s) 14, 103, 349, 652, 701, 738, 746, 973
KflI GGGWCCC 1 cut(s) 798
Kzo9I GATC 5 cut(s) 222, 274, 553, 577, 814
LmnI GCTCC 2 cut(s) 250, 469
Lsp1109I GCAGC 2 cut(s) 448, 751
LweI GCATC 2 cut(s) 397, 424
MaeI CTAG 6 cut(s) 362, 480, 582, 831, 858, 1029
MaeIII GTNAC 1 cut(s) 688
MalI GATC 5 cut(s) 224, 276, 555, 579, 816
MboI GATC 5 cut(s) 222, 274, 553, 577, 814
MboII GAAGA 6 cut(s) 162, 188, 346, 416, 943, 1011
MflI RGATCY 2 cut(s) 222, 274
MhlI GDGCHC 1 cut(s) 824
MluCI AATT 6 cut(s) 72, 372, 544, 630, 1008, 1036
MmeI TCCRAC 6 cut(s) 76, 228, 252, 278, 575, 928
MnlI CCTC 6 cut(s) 123, 333, 412, 628, 767, 873
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 702, 968
MspA1I CMGCKG 1 cut(s) 1059
MspI CCGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 184
NdeII GATC 5 cut(s) 222, 274, 553, 577, 814
NlaIII CATG 8 cut(s) 14, 103, 349, 652, 701, 738, 746, 973
NlaIV GGNNCC 6 cut(s) 31, 45, 111, 276, 799, 800
NmeAIII GCCGAG 1 cut(s) 263
NspI RCATGY 1 cut(s) 746
PaeI GCATGC 1 cut(s) 746
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 638
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 3 cut(s) 159, 463, 741
PpuMI RGGWCCY 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 798
PspN4I GGNNCC 6 cut(s) 31, 45, 111, 276, 799, 800
PspPI GGNCC 4 cut(s) 30, 49, 776, 798
PspPPI RGGWCCY 1 cut(s) 798
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 222, 274
PvuII CAGCTG 1 cut(s) 1059
RsaI GTAC 2 cut(s) 122, 733
RsaNI GTAC 2 cut(s) 121, 732
RseI CAYNNNNRTG 2 cut(s) 702, 968
SacI GAGCTC 1 cut(s) 824
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 158, 462, 740
Sau3AI GATC 5 cut(s) 222, 274, 553, 577, 814
Sau96I GGNCC 4 cut(s) 30, 49, 776, 798
SduI GDGCHC 1 cut(s) 824
SfaNI GCATC 2 cut(s) 397, 424
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 4 cut(s) 30, 49, 776, 798
SmiMI CAYNNNNRTG 2 cut(s) 702, 968
SphI GCATGC 1 cut(s) 746
Sse9I AATT 6 cut(s) 72, 372, 544, 630, 1008, 1036
SsiI CCGC 4 cut(s) 157, 477, 729, 795
SspMI CTAG 6 cut(s) 362, 480, 582, 831, 858, 1029
SstI GAGCTC 1 cut(s) 824
TaaI ACNGT 3 cut(s) 130, 194, 967
TaqI TCGA 2 cut(s) 115, 196
TasI AATT 6 cut(s) 72, 372, 544, 630, 1008, 1036
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 461, 739
TspDTI ATGAA 2 cut(s) 593, 732
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 4 cut(s) 30, 49, 776, 798
XapI RAATTY 4 cut(s) 72, 372, 544, 1036
XceI RCATGY 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 6 cut(s) 362, 480, 582, 831, 858, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.