Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043066.1

Orthogroup ID

OG0009803

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1271

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

atggggattatggtctttaatgcttttggaatttcagcttttagcagtgtaccgagtgtcgagctttatagggagtcgaaaatttctggttgcattgcttacaatgaagtgttgaatgcaagcgctgagaaagtgtctgaatctgtagatgataagggtatatttgagttgattctgcacatgaaattcacttgctgcaacattagaatggaacagcctggtaatggaacatatgggatcagtcaaatggaaccggcccaacagccactgatatctggacttcctgatgacattgctcttttctgcatggcaagggttccacgaaagtaccatacagtcctaaagtgtgtttcaaaaagatggcaacacttggtgggcagtgaagagtggcattcctaccgtcgaaagcataatcttgatgagacttggatctatgctttgtgccgagacaaattggagcgtctttgcctgtatgtattggatccaaagtcatcaagaaggagttggaagcttgttaatgagcttcctcctcgcaccttgaagagaaaaggcatgggttttgaagtgcttggaaagaaagtttacttgttgggtggttgcggttggtgtgaagatgctacagatgaggtctactactatgatgcttccctgaacacttggagtgaagctgctcccttatctattgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

7.53

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61350 AT3G61350
fragaria_vesca	FvH4_7g14191
malus_domestica	MD01G1058200.v1.1 MD01G1058900.v1.1
prunus_persica	Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1 Prupe.2G169600_v2.0.a1
pyrus_communis	pycom01g08780 pycom07g13570
rosa_chinensis	RchiOBHm_Chr1g0355111
rosa_laevigata	RLG00000028176
rosa_multiflora	Rmu_sc0003115.1_g000034 Rmu_sc0016725.1_g000007 Rmu_sc0043066.1_g000001
rosa_samantha	Rh1AG257400 Rh1AG257500 Rh3BG328500
rosa_wichuraiana	Rw0G011240 Rw1G022710 Rw1G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	4 cut(s)	245, 437, 476, 489
AcsI	RAATTY	3 cut(s)	30, 81, 185
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	51, 329
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	115, 354, 541, 563
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	5 cut(s)	38, 64, 511, 523, 668
AluI	AGCT	5 cut(s)	38, 64, 511, 523, 668
Alw26I	GTCTC	2 cut(s)	416, 441
AlwI	GGATC	4 cut(s)	245, 437, 476, 489
AlwNI	CAGNNNCTG	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	195, 668
ApoI	RAATTY	3 cut(s)	30, 81, 185
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	311, 344
BamHI	GGATCC	1 cut(s)	481
BbvI	GCAGC	2 cut(s)	182, 655
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	416, 441
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	144, 618
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	2 cut(s)	196, 669
BlsI	GCNGC	2 cut(s)	197, 670
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	252, 318, 483
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	604, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	253
Bse3DI	GCAATG	2 cut(s)	93, 291
BseBI	CCWGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	2 cut(s)	93, 291
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	182, 655
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	416, 441
BsmI	GAATGC	2 cut(s)	121, 391
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	237, 429, 481
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	252, 318, 483
BspPI	GGATC	4 cut(s)	245, 437, 476, 489
BsrDI	GCAATG	2 cut(s)	93, 291
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssMI	GATC	3 cut(s)	237, 429, 481
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	337, 401
Bst6I	CTCTTC	2 cut(s)	378, 536
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	240, 432, 484
BstMAI	GTCTC	2 cut(s)	416, 441
BstMBI	GATC	3 cut(s)	237, 429, 481
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	2 cut(s)	144, 618
BstV1I	GCAGC	2 cut(s)	182, 655
BstX2I	RGATCY	2 cut(s)	429, 481
BstYI	RGATCY	2 cut(s)	429, 481
BsuRI	GGCC	1 cut(s)	257
BtsI	GCAGTG	2 cut(s)	52, 385
BtsIMutI	CAGTG	3 cut(s)	52, 266, 385
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	50, 328
CviAII	CATG	3 cut(s)	181, 307, 553
CviJI	RGCY	8 cut(s)	38, 64, 217, 257, 265, 511, 523, 668
CviKI_1	RGCY	8 cut(s)	38, 64, 217, 257, 265, 511, 523, 668
CviQI	GTAC	2 cut(s)	50, 328
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	239, 431, 483
DpnII	GATC	3 cut(s)	237, 429, 481
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	378, 536
EarI	CTCTTC	2 cut(s)	378, 536
Eco32I	GATATC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	273
FaeI	CATG	3 cut(s)	184, 310, 556
FatI	CATG	3 cut(s)	180, 306, 552
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	2 cut(s)	196, 669
Fsp4HI	GCNGC	2 cut(s)	196, 669
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	196, 669
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	184, 310, 556
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	74, 140, 172
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	50, 583, 631
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	4 cut(s)	276, 284, 416, 495
Hpy8I	GTNNAC	3 cut(s)	50, 583, 631
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	2 cut(s)	337, 401
HpyCH4V	TGCA	5 cut(s)	93, 119, 178, 198, 306
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	184, 310, 556
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	237, 429, 481
LmnI	GCTCC	2 cut(s)	457, 676
LpnPI	CCDG	8 cut(s)	72, 204, 231, 261, 267, 297, 482, 662
Lsp1109I	GCAGC	2 cut(s)	182, 655
LweI	GCATC	2 cut(s)	604, 631
MaeI	CTAG	1 cut(s)	687
MalI	GATC	3 cut(s)	239, 431, 483
MboI	GATC	3 cut(s)	237, 429, 481
MboII	GAAGA	3 cut(s)	395, 553, 623
MflI	RGATCY	2 cut(s)	429, 481
MluCI	AATT	4 cut(s)	30, 81, 185, 452
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	3 cut(s)	537, 540, 619
MseI	TTAA	2 cut(s)	18, 516
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	121, 391
MvaI	CCWGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	237, 429, 481
NlaIII	CATG	3 cut(s)	184, 310, 556
NlaIV	GGNNCC	3 cut(s)	252, 318, 483
NmeAIII	GCCGAG	1 cut(s)	470
PctI	GAATGC	2 cut(s)	121, 391
PfeI	GAWTC	2 cut(s)	140, 172
PkrI	GCNGC	2 cut(s)	197, 670
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	252, 318, 483
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	429, 481
RsaI	GTAC	2 cut(s)	51, 329
RsaNI	GTAC	2 cut(s)	50, 328
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	18, 516
SatI	GCNGC	2 cut(s)	196, 669
Sau3AI	GATC	3 cut(s)	237, 429, 481
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	7 cut(s)	40, 66, 513, 525, 539, 630, 670
SfaNI	GCATC	2 cut(s)	604, 631
SfcI	CTRYAG	2 cut(s)	144, 618
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	30, 81, 185, 452
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	337, 401
TaqI	TCGA	3 cut(s)	60, 77, 403
TasI	AATT	4 cut(s)	30, 81, 185, 452
TfiI	GAWTC	2 cut(s)	140, 172
Tru1I	TTAA	2 cut(s)	18, 516
Tru9I	TTAA	2 cut(s)	18, 516
TscAI	CASTG	3 cut(s)	52, 273, 385
TseI	GCWGC	2 cut(s)	195, 668
TspDTI	ATGAA	2 cut(s)	120, 197
TspRI	CASTG	3 cut(s)	52, 273, 385
XapI	RAATTY	3 cut(s)	30, 81, 185
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.