Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

22939388 .. 22941508

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61950.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAAGGTTTCAAGGACACATCAACCCCTGTTTCTTCGATCGAAAACCGGATGTGAGAAGCCTCGAGGTTCAAGGATTTGCAGAGGCTCAAAGCTTTGCTTTCAAAGAAAAAGAGGAAGAAAGCTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGTTTTTTTCAATCAAAGAGCCAAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTGGGAACTCGAAAGATATCTTTCACTTGAGGATTCACAATTTCATTCACCGGTCCAATCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGAAATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCACATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCTCAAGAAATGACTAGAGAAAAGAGAAAGAGGAGGAAAACAAAACCAAGTAAAAACAATGAAGAGATTGAGAATCAAAGAATAAACCACATTGCTGTTGAACGAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGGAGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCGAATCGCAAAAGAGAACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCACTTAATCATCTCTCAGGCATTTCGTCGAACGACCTGTGGACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCGAAGCTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAACTTCTCAAAGGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCACTACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGATGAGTGCGACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGGATTTTCGATATTCCGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

358

Amino Acids

41.03

Weight (kDa)

6.29

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	125 - 175	9.9e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AatII	GACGTC	1 cut(s)	568
AbsI	CCTCGAGG	1 cut(s)	65
AciI	CCGC	2 cut(s)	313, 1040
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	565
AdeI	CACNNNGTG	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	319, 997
AgeI	ACCGGT	1 cut(s)	292
AhdI	GACNNNNNGTC	1 cut(s)	1018
AluBI	AGCT	6 cut(s)	96, 126, 338, 638, 833, 922
AluI	AGCT	6 cut(s)	96, 126, 338, 638, 833, 922
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	4 cut(s)	225, 299, 624, 966
Alw44I	GTGCAC	1 cut(s)	411
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	2 cut(s)	65, 677
AoxI	GGCC	1 cut(s)	597
ApaI	GGGCCC	1 cut(s)	601
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	157, 448
ApoI	RAATTY	1 cut(s)	354
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	4 cut(s)	295, 597, 598, 673
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	282, 393
AvaI	CYCGRG	2 cut(s)	65, 677
AvaII	GGWCC	2 cut(s)	295, 673
BaeGI	GKGCMC	2 cut(s)	415, 601
BanII	GRGCYC	1 cut(s)	601
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbsI	GAAGAC	2 cut(s)	174, 568
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	144, 435
BccI	CCATC	1 cut(s)	991
BceAI	ACGGC	1 cut(s)	1053
BciVI	GTATCC	1 cut(s)	827
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	4 cut(s)	225, 299, 624, 966
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	2 cut(s)	149, 834
BfuI	GTATCC	1 cut(s)	827
BisI	GCNGC	3 cut(s)	158, 449, 1041
BlsI	GCNGC	3 cut(s)	159, 450, 1042
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	295, 673
BmeRI	GACNNNNNGTC	1 cut(s)	1018
BmeT110I	CYCGRG	2 cut(s)	65, 677
BmgT120I	GGNCC	4 cut(s)	295, 597, 598, 673
BmiI	GGNNCC	3 cut(s)	240, 328, 599
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	174, 568
BpuEI	CTTGAG	4 cut(s)	218, 290, 438, 977
BpuMI	CCSGG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	565
BsaI	GGTCTC	2 cut(s)	299, 624
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	2 cut(s)	49, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 997
Bse118I	RCCGGY	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	58, 618
BseLI	CCNNNNNNNGG	2 cut(s)	319, 997
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	294, 421, 780
BseRI	GAGGAG	3 cut(s)	496, 642, 666
BseSI	GKGCMC	2 cut(s)	415, 601
BseXI	GCAGC	2 cut(s)	144, 435
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	599
BshTI	ACCGGT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	2 cut(s)	65, 677
BsiSI	CCGG	3 cut(s)	50, 293, 595
BslI	CCNNNNNNNGG	2 cut(s)	319, 997
BsmAI	GTCTC	4 cut(s)	225, 299, 624, 966
BsmBI	CGTCTC	1 cut(s)	966
BsnI	GGCC	1 cut(s)	599
Bso31I	GGTCTC	2 cut(s)	299, 624
BsoBI	CYCGRG	2 cut(s)	65, 677
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	415, 601
Bsp143I	GATC	2 cut(s)	40, 805
BspACI	CCGC	2 cut(s)	313, 1040
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	295, 420, 779
BspLI	GGNNCC	3 cut(s)	240, 328, 599
BspTNI	GGTCTC	2 cut(s)	299, 624
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	40, 805
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	5 cut(s)	139, 219, 734, 838, 934
Bst6I	CTCTTC	2 cut(s)	228, 507
BstACI	GRCGYC	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	667
BstDEI	CTNAG	4 cut(s)	303, 407, 766, 1015
BstF5I	GGATG	2 cut(s)	58, 618
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	43, 808
BstMAI	GTCTC	4 cut(s)	225, 299, 624, 966
BstMBI	GATC	2 cut(s)	40, 805
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	149, 834
BstSLI	GKGCMC	2 cut(s)	415, 601
BstV1I	GCAGC	2 cut(s)	144, 435
BstV2I	GAAGAC	2 cut(s)	174, 568
BsuI	GTATCC	1 cut(s)	827
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	58, 618
BtsIMutI	CAGTG	4 cut(s)	415, 739, 843, 930
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	4 cut(s)	295, 597, 598, 673
CseI	GACGC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	3 cut(s)	319, 376, 851
DdeI	CTNAG	4 cut(s)	303, 407, 766, 1015
DpnI	GATC	2 cut(s)	42, 807
DpnII	GATC	2 cut(s)	40, 805
DraIII	CACNNNGTG	1 cut(s)	410
DrdI	GACNNNNNNGTC	1 cut(s)	217
DriI	GACNNNNNGTC	1 cut(s)	1018
DseDI	GACNNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	228, 507
Eam1105I	GACNNNNNGTC	1 cut(s)	1018
EarI	CTCTTC	2 cut(s)	228, 507
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	2 cut(s)	299, 624
Eco32I	GATATC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	295, 673
Eco88I	CYCGRG	2 cut(s)	65, 677
EcoO109I	RGGNCCY	2 cut(s)	598, 673
EcoRV	GATATC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	966
FaeI	CATG	3 cut(s)	322, 379, 854
FaiI	YATR	7 cut(s)	320, 377, 582, 644, 689, 852, 908
FalI	AAGNNNNNCTT	4 cut(s)	85, 117, 876, 908
FatI	CATG	3 cut(s)	318, 375, 850
Fnu4HI	GCNGC	3 cut(s)	158, 449, 1041
FokI	GGATG	2 cut(s)	65, 605
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	158, 449, 1041
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	3 cut(s)	158, 449, 1041
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	3 cut(s)	50, 293, 595
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	322, 379, 854
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	4 cut(s)	94, 124, 636, 920
HinfI	GANTC	5 cut(s)	275, 523, 701, 903, 1019
HpaII	CCGG	3 cut(s)	50, 293, 595
HphI	GGTGA	2 cut(s)	282, 393
Hpy166II	GTNNAC	2 cut(s)	413, 792
Hpy188I	TCNGA	4 cut(s)	210, 304, 1053, 1068
Hpy188III	TCNNGA	5 cut(s)	420, 455, 698, 800, 994
Hpy8I	GTNNAC	2 cut(s)	413, 792
Hpy99I	CGWCG	2 cut(s)	781, 1031
HpyAV	CCTTC	6 cut(s)	317, 396, 611, 621, 664, 994
HpyCH4III	ACNGT	5 cut(s)	139, 219, 734, 838, 934
HpyCH4IV	ACGT	2 cut(s)	565, 666
HpyCH4V	TGCA	3 cut(s)	83, 160, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	4 cut(s)	303, 407, 766, 1015
HpySE526I	ACGT	2 cut(s)	565, 666
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	3 cut(s)	322, 379, 854
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	40, 805
LmnI	GCTCC	3 cut(s)	238, 326, 653
LpnPI	CCDG	6 cut(s)	43, 63, 306, 608, 753, 800
Lsp1109I	GCAGC	2 cut(s)	144, 435
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	565, 666
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	2 cut(s)	42, 807
MboI	GATC	2 cut(s)	40, 805
MhlI	GDGCHC	2 cut(s)	415, 601
MluCI	AATT	3 cut(s)	281, 354, 1071
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	756, 861, 924
MspI	CCGG	3 cut(s)	50, 293, 595
MspR9I	CCNGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	2 cut(s)	40, 805
NlaIII	CATG	3 cut(s)	322, 379, 854
NlaIV	GGNNCC	3 cut(s)	240, 328, 599
PaeR7I	CTCGAG	2 cut(s)	65, 677
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	4 cut(s)	275, 523, 701, 903
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	159, 450, 1042
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
Ppu21I	YACGTR	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	673
Psp5II	RGGWCCY	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	240, 328, 599
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	4 cut(s)	295, 597, 598, 673
PspPPI	RGGWCCY	1 cut(s)	673
PspXI	VCTCGAGB	2 cut(s)	65, 677
PstNI	CAGNNNCTG	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	756, 861, 924
SatI	GCNGC	3 cut(s)	158, 449, 1041
Sau3AI	GATC	2 cut(s)	40, 805
Sau96I	GGNCC	4 cut(s)	295, 597, 598, 673
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	415, 601
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	149, 834
Sfr274I	CTCGAG	2 cut(s)	65, 677
SinI	GGWCC	2 cut(s)	295, 673
SlaI	CTCGAG	2 cut(s)	65, 677
SmlI	CTYRAG	6 cut(s)	65, 233, 269, 453, 677, 992
SmoI	CTYRAG	6 cut(s)	65, 233, 269, 453, 677, 992
Sse9I	AATT	3 cut(s)	281, 354, 1071
SsiI	CCGC	2 cut(s)	313, 1040
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	5 cut(s)	139, 219, 734, 838, 934
TaiI	ACGT	2 cut(s)	568, 669
TaqI	TCGA	9 cut(s)	39, 43, 66, 252, 678, 699, 779, 828, 1059
TasI	AATT	3 cut(s)	281, 354, 1071
TauI	GCSGC	1 cut(s)	1043
TfiI	GAWTC	4 cut(s)	275, 523, 701, 903
Tru1I	TTAA	3 cut(s)	756, 861, 924
Tru9I	TTAA	3 cut(s)	756, 861, 924
TscAI	CASTG	4 cut(s)	415, 739, 843, 937
TseI	GCWGC	2 cut(s)	157, 448
TspDTI	ATGAA	6 cut(s)	275, 307, 525, 587, 929, 1037
TspRI	CASTG	4 cut(s)	415, 739, 843, 937
VneI	GTGCAC	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	295, 673
XapI	RAATTY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XhoI	CTCGAG	2 cut(s)	65, 677
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.