RchiOBHm_Chr1g0361191

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
53198215 .. 53201363
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58610

Sequence Viewer

Length: 1254 bp
ATGGAGAGGCTCCAAGGACCCATTAATCCCTGTTTCTTTGGAGACCATTTGGATTTGCAGTGCTTAGAGCAAGGATTCACCACCACCACCACCACACATGGCTTGAGATTTGAGGAAGAAGAAGCACTGTACCTCTCAGGCTTCGAGGATAGAATGCCATTTCTTCAGATGCTACAAAGCATTGATTTCCCCCCGTGTGATTTCACTCAAAAAGAGCCAAGCTTTCAAGCACTGTTGAGATTACAGCACAAGACCGGTACAACTTGGCCTGAAATGGAAAATACCCAAAGTTCCCAAATTCACACACTTGAGGCACTTGAGAGCTGTGTAACTCAAGACAATCAACAACAGTTGTATTCACCAGCAAAATCTGAAGGAAGAGACCCTCACCAAAACCCTCTTTCAGTGTCTGGTACTCTTGAGGGTGGTGGTGGTGTGAGCTCAGATTGCAACCGAGAAATGCAGCAACTCAACTCAGCGAAAATGGGTCCTAACCAGACCCTGCAGACCCAGTTCACCAAGTCGGCTTCTTCTCCGGCCACCCGAGAGAGACGAAAGCGCAAGAGAACAAGACCAACCAAGAACAAAGAGGAAGTAGAGAGCCAGAGAATGACCCACATTGCTGTTGAGCGCAACCGCAGACGCCAAATGAATGACCATCTCAATGGTCTCAGATCCCTCATGCCCCCTTCCTACATTCAAAGGGGTGACCAAGCATCCATAGTTGGGGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGCACCTTCAGTCCCTTGAAGCCCAAAAGAGAATGAAAAGAGCTGAAGGCTTCACCACCAATGTTGACCCTAACAATAACAACTCCTTGAACTCATCTTCACCATCTTCATCATCGGCCATGGCAATGCCTTCAAATGGGATGTTCATGTCTCTCTCCCAATGCAGAATCGCGTCTACTGAGGAAGGAAACACTTGTGGGGATGATGGAGTCACAGCACAAAACAAGTCTGAGGCTGCAGAAGTAGATGTCACAGTGATCCAAACCCATGTGAACTTGAAGGTCCAGTGTCAAAAGAGGCCTGGCCAGTTGGTGAGAGCCCTTATTGCCTTGGAAGATCTCAGGCTAACAGTTTTGCACCTCAACATTACTTCTTCAGAAGACACGGTTCTTTACTCTTTCAATCTCAAGATTGAGGAGGGATGTAAGTTAGGATCAGCAGATAACATTGCCAGAGCAGTACATCAAATATTCAGCTTCATCAATGGCAGCTGA

Protein Analysis

417

Amino Acids

46.5

Weight (kDa)

5.93

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 202 - 253 2.9e-12 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 334 - 411 1.6e-10 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 935
AccII CGCG 1 cut(s) 932
AciI CCGC 1 cut(s) 637
AclWI GGATC 3 cut(s) 669, 1012, 1201
AcoI YGGCCR 3 cut(s) 537, 876, 1063
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 5 cut(s) 149, 393, 752, 825, 1119
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 4 cut(s) 131, 259, 415, 1221
AfiI CCNNNNNNNGG 2 cut(s) 726, 896
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 7 cut(s) 227, 701, 779, 850, 894, 1039, 1162
AjnI CCWGG 1 cut(s) 1060
AluBI AGCT 6 cut(s) 222, 324, 441, 803, 1236, 1251
AluI AGCT 6 cut(s) 222, 324, 441, 803, 1236, 1251
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 5 cut(s) 36, 375, 544, 674, 915
AlwI GGATC 3 cut(s) 669, 1012, 1201
AlwNI CAGNNNCTG 2 cut(s) 410, 502
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 5 cut(s) 266, 537, 876, 1058, 1063
ApeKI GCWGC 4 cut(s) 463, 760, 995, 1248
ApoI RAATTY 1 cut(s) 297
AseI ATTAAT 1 cut(s) 24
AsiGI ACCGGT 1 cut(s) 254
AspLEI GCGC 2 cut(s) 561, 633
AspS9I GGNCC 3 cut(s) 17, 488, 1042
AsuHPI GGTGA 8 cut(s) 70, 351, 380, 508, 719, 805, 852, 1084
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 3 cut(s) 17, 488, 1042
BalI TGGCCA 1 cut(s) 1065
BanII GRGCYC 2 cut(s) 443, 1081
BbsI GAAGAC 1 cut(s) 1146
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 475, 772, 982
BccI CCATC 3 cut(s) 666, 871, 959
BciT130I CCWGG 1 cut(s) 1062
BcoDI GTCTC 5 cut(s) 36, 375, 544, 674, 915
BfmI CTRYAG 2 cut(s) 503, 996
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 4 cut(s) 464, 761, 996, 1249
BlsI GCNGC 4 cut(s) 465, 762, 997, 1250
Bme1390I CCNGG 1 cut(s) 1062
Bme18I GGWCC 3 cut(s) 17, 488, 1042
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 3 cut(s) 17, 488, 1042
BmiI GGNNCC 3 cut(s) 11, 19, 489
BmrFI CCNGG 1 cut(s) 1062
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 159, 725
BmuI ACTGGG 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 1146
BpuEI CTTGAG 6 cut(s) 124, 318, 329, 338, 440, 1151
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 3 cut(s) 36, 375, 674
BsaJI CCNNGG 3 cut(s) 13, 879, 1089
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 726, 896
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 511, 1045, 1066
Bse3DI GCAATG 3 cut(s) 618, 891, 1206
BseBI CCWGG 1 cut(s) 1062
BseDI CCNNGG 3 cut(s) 13, 879, 1089
BseGI GGATG 4 cut(s) 716, 906, 967, 1187
BseLI CCNNNNNNNGG 2 cut(s) 726, 896
BseMI GCAATG 3 cut(s) 618, 891, 1206
BseMII CTCAG 7 cut(s) 150, 456, 489, 685, 930, 981, 1114
BseNI ACTGG 3 cut(s) 511, 1045, 1066
BseRI GAGGAG 1 cut(s) 1190
BseXI GCAGC 3 cut(s) 475, 772, 982
Bsh1236I CGCG 1 cut(s) 932
BshFI GGCC 5 cut(s) 268, 539, 878, 1060, 1065
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 2 cut(s) 255, 536
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 2 cut(s) 726, 896
BsmAI GTCTC 5 cut(s) 36, 375, 544, 674, 915
BsmBI CGTCTC 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 5 cut(s) 268, 539, 878, 1060, 1065
Bso31I GGTCTC 3 cut(s) 36, 375, 674
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 443, 1081
Bsp143I GATC 4 cut(s) 674, 1017, 1096, 1193
Bsp19I CCATGG 1 cut(s) 879
BspACI CCGC 1 cut(s) 637
BspANI GGCC 5 cut(s) 268, 539, 878, 1060, 1065
BspCNI CTCAG 7 cut(s) 149, 455, 488, 684, 931, 982, 1113
BspFNI CGCG 1 cut(s) 932
BspLI GGNNCC 3 cut(s) 11, 19, 489
BspMAI CTGCAG 2 cut(s) 507, 1000
BspPI GGATC 3 cut(s) 669, 1012, 1201
BspTNI GGTCTC 3 cut(s) 36, 375, 674
BsrDI GCAATG 3 cut(s) 618, 891, 1206
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 511, 1045, 1066
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 13, 879, 1089
BssMI GATC 4 cut(s) 674, 1017, 1096, 1193
BssNI GRCGYC 1 cut(s) 643
BssT1I CCWWGG 3 cut(s) 13, 879, 1089
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 6 cut(s) 129, 234, 351, 1015, 1111, 1147
Bst6I CTCTTC 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 643
BstDEI CTNAG 8 cut(s) 64, 136, 442, 475, 671, 939, 990, 1100
BstDSI CCRYGG 1 cut(s) 879
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 4 cut(s) 716, 906, 967, 1187
BstFNI CGCG 1 cut(s) 932
BstHHI GCGC 2 cut(s) 561, 633
BstKTI GATC 4 cut(s) 677, 1020, 1099, 1196
BstMAI GTCTC 5 cut(s) 36, 375, 544, 674, 915
BstMBI GATC 4 cut(s) 674, 1017, 1096, 1193
BstMWI GCNNNNNNNGC 2 cut(s) 447, 1085
BstNI CCWGG 1 cut(s) 1062
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 1060
BstSFI CTRYAG 2 cut(s) 503, 996
BstUI CGCG 1 cut(s) 932
BstV1I GCAGC 3 cut(s) 475, 772, 982
BstV2I GAAGAC 1 cut(s) 1146
BstX2I RGATCY 2 cut(s) 674, 1096
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 2 cut(s) 674, 1096
BsuRI GGCC 5 cut(s) 268, 539, 878, 1060, 1065
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 4 cut(s) 716, 906, 967, 1187
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 6 cut(s) 65, 125, 230, 411, 1020, 1052
CaiI CAGNNNCTG 2 cut(s) 410, 502
CfoI GCGC 2 cut(s) 561, 633
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 17, 488, 1042
CseI GACGC 2 cut(s) 651, 921
Csp6I GTAC 4 cut(s) 130, 258, 414, 1220
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 5 cut(s) 98, 682, 880, 907, 1028
CviQI GTAC 4 cut(s) 130, 258, 414, 1220
DdeI CTNAG 8 cut(s) 64, 136, 442, 475, 671, 939, 990, 1100
DpnI GATC 4 cut(s) 676, 1019, 1098, 1195
DpnII GATC 4 cut(s) 674, 1017, 1096, 1193
EaeI YGGCCR 3 cut(s) 537, 876, 1063
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 441
Eco130I CCWWGG 3 cut(s) 13, 879, 1089
Eco147I AGGCCT 1 cut(s) 1060
Eco24I GRGCYC 2 cut(s) 443, 1081
Eco31I GGTCTC 3 cut(s) 36, 375, 674
Eco47I GGWCC 3 cut(s) 17, 488, 1042
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 5 cut(s) 149, 393, 752, 825, 1119
Eco88I CYCGRG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 441
EcoO109I RGGNCCY 2 cut(s) 17, 488
EcoO65I GGTNACC 1 cut(s) 707
EcoRII CCWGG 1 cut(s) 1060
EcoT14I CCWWGG 3 cut(s) 13, 879, 1089
EcoT38I GRGCYC 2 cut(s) 443, 1081
ErhI CCWWGG 3 cut(s) 13, 879, 1089
Esp3I CGTCTC 1 cut(s) 544
FaeI CATG 5 cut(s) 101, 685, 883, 910, 1031
FaiI YATR 6 cut(s) 99, 683, 722, 881, 908, 1029
FaqI GGGAC 1 cut(s) 757
FatI CATG 5 cut(s) 97, 681, 879, 906, 1027
FblI GTMKAC 1 cut(s) 935
Fnu4HI GCNGC 4 cut(s) 464, 761, 996, 1249
FokI GGATG 4 cut(s) 703, 913, 974, 1194
FriOI GRGCYC 2 cut(s) 443, 1081
Fsp4HI GCNGC 4 cut(s) 464, 761, 996, 1249
GlaI GCGC 2 cut(s) 560, 632
GluI GCNGC 4 cut(s) 464, 761, 996, 1249
HaeIII GGCC 5 cut(s) 268, 539, 878, 1060, 1065
HapII CCGG 2 cut(s) 255, 536
HgaI GACGC 2 cut(s) 651, 921
HhaI GCGC 2 cut(s) 561, 633
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 5 cut(s) 101, 685, 883, 910, 1031
Hin6I GCGC 2 cut(s) 559, 631
HinP1I GCGC 2 cut(s) 559, 631
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 3 cut(s) 75, 927, 969
HpaII CCGG 2 cut(s) 255, 536
HphI GGTGA 8 cut(s) 70, 351, 380, 508, 719, 805, 852, 1084
Hpy166II GTNNAC 4 cut(s) 516, 826, 936, 1033
Hpy188I TCNGA 6 cut(s) 168, 373, 445, 674, 991, 1138
Hpy188III TCNNGA 3 cut(s) 335, 419, 1168
Hpy8I GTNNAC 4 cut(s) 516, 826, 936, 1033
HpyAV CCTTC 8 cut(s) 368, 699, 742, 776, 800, 900, 938, 1033
HpyCH4III ACNGT 6 cut(s) 129, 234, 351, 1015, 1111, 1147
HpyCH4V TGCA 8 cut(s) 58, 450, 463, 505, 734, 924, 998, 1117
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 1085
HpyF3I CTNAG 8 cut(s) 64, 136, 442, 475, 671, 939, 990, 1100
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 5 cut(s) 101, 685, 883, 910, 1031
HspAI GCGC 2 cut(s) 559, 631
Kzo9I GATC 4 cut(s) 674, 1017, 1096, 1193
LmnI GCTCC 2 cut(s) 15, 757
Lsp1109I GCAGC 3 cut(s) 475, 772, 982
LweI GCATC 2 cut(s) 159, 725
MaeIII GTNAC 4 cut(s) 328, 707, 970, 1009
MalI GATC 4 cut(s) 676, 1019, 1098, 1195
MboI GATC 4 cut(s) 674, 1017, 1096, 1193
MflI RGATCY 2 cut(s) 674, 1096
MhlI GDGCHC 2 cut(s) 443, 1081
MlsI TGGCCA 1 cut(s) 1065
MluCI AATT 2 cut(s) 297, 752
MluNI TGGCCA 1 cut(s) 1065
MlyI GAGTC 1 cut(s) 978
Mox20I TGGCCA 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 1065
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 2 cut(s) 663, 884
Msp20I TGGCCA 1 cut(s) 1065
MspA1I CMGCKG 1 cut(s) 1251
MspI CCGG 2 cut(s) 255, 536
MspR9I CCNGG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 1062
MvnI CGCG 1 cut(s) 932
MwoI GCNNNNNNNGC 2 cut(s) 447, 1085
NcoI CCATGG 1 cut(s) 879
NdeII GATC 4 cut(s) 674, 1017, 1096, 1193
NlaIII CATG 5 cut(s) 101, 685, 883, 910, 1031
NlaIV GGNNCC 3 cut(s) 11, 19, 489
NmuCI GTSAC 3 cut(s) 707, 970, 1009
PceI AGGCCT 1 cut(s) 1060
PctI GAATGC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 75, 927
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 4 cut(s) 465, 762, 997, 1250
PleI GAGTC 1 cut(s) 977
PpsI GAGTC 1 cut(s) 977
PpuMI RGGWCCY 2 cut(s) 17, 488
PshBI ATTAAT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 443
Psp5II RGGWCCY 2 cut(s) 17, 488
Psp6I CCWGG 1 cut(s) 1060
PspEI GGTNACC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 3 cut(s) 11, 19, 489
PspPI GGNCC 3 cut(s) 17, 488, 1042
PspPPI RGGWCCY 2 cut(s) 17, 488
PstI CTGCAG 2 cut(s) 507, 1000
PstNI CAGNNNCTG 2 cut(s) 410, 502
PsuI RGATCY 2 cut(s) 674, 1096
PvuII CAGCTG 1 cut(s) 1251
RsaI GTAC 4 cut(s) 131, 259, 415, 1221
RsaNI GTAC 4 cut(s) 130, 258, 414, 1220
RseI CAYNNNNRTG 2 cut(s) 663, 884
SacI GAGCTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 4 cut(s) 464, 761, 996, 1249
Sau3AI GATC 4 cut(s) 674, 1017, 1096, 1193
Sau96I GGNCC 3 cut(s) 17, 488, 1042
SchI GAGTC 1 cut(s) 978
ScrFI CCNGG 1 cut(s) 1062
SduI GDGCHC 2 cut(s) 443, 1081
SfaNI GCATC 2 cut(s) 159, 725
SfcI CTRYAG 2 cut(s) 503, 996
SinI GGWCC 3 cut(s) 17, 488, 1042
SmiMI CAYNNNNRTG 2 cut(s) 663, 884
SmlI CTYRAG 6 cut(s) 103, 308, 317, 333, 419, 1166
SmoI CTYRAG 6 cut(s) 103, 308, 317, 333, 419, 1166
Sse9I AATT 2 cut(s) 297, 752
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 1 cut(s) 637
SspI AATATT 1 cut(s) 1230
SstI GAGCTC 1 cut(s) 443
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 1 cut(s) 1060
StyI CCWWGG 3 cut(s) 13, 879, 1089
TaaI ACNGT 6 cut(s) 129, 234, 351, 1015, 1111, 1147
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 297, 752
TatI WGTACW 1 cut(s) 1219
TfiI GAWTC 2 cut(s) 75, 927
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 6 cut(s) 65, 132, 237, 411, 1020, 1052
TseFI GTSAC 3 cut(s) 707, 970, 1009
TseI GCWGC 4 cut(s) 463, 760, 995, 1248
Tsp45I GTSAC 3 cut(s) 707, 970, 1009
TspDTI ATGAA 5 cut(s) 665, 809, 858, 895, 1228
TspRI CASTG 6 cut(s) 65, 132, 237, 411, 1020, 1052
VpaK11BI GGWCC 3 cut(s) 17, 488, 1042
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.