transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460 |
| fragaria_vesca | FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790 |
| malus_domestica | MD01G1089300.v1.1 MD07G1160700.v1.1 |
| prunus_persica | Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1 |
| pyrus_communis | pycom01g11350 pycom07g15680 |
| rosa_chinensis | RchiOBHm_Chr1g0361191 |
| rosa_laevigata | RLG00000027740 |
| rosa_multiflora | Rmu_sc0007111.1_g000017 |
| rosa_roxburghii | Rroxscaffold_4G00295280 |
| rosa_rugosa | Rorug01G0287400.1 |
| rosa_samantha | Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400 |
| rosa_wichuraiana | Rw1G026370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 935 |
| AccII | CGCG | 1 cut(s) | 932 |
| AciI | CCGC | 1 cut(s) | 637 |
| AclWI | GGATC | 3 cut(s) | 669, 1012, 1201 |
| AcoI | YGGCCR | 3 cut(s) | 537, 876, 1063 |
| AcsI | RAATTY | 1 cut(s) | 297 |
| AcuI | CTGAAG | 5 cut(s) | 149, 393, 752, 825, 1119 |
| AcyI | GRCGYC | 1 cut(s) | 643 |
| AfaI | GTAC | 4 cut(s) | 131, 259, 415, 1221 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 726, 896 |
| AgeI | ACCGGT | 1 cut(s) | 254 |
| AgsI | TTSAA | 7 cut(s) | 227, 701, 779, 850, 894, 1039, 1162 |
| AjnI | CCWGG | 1 cut(s) | 1060 |
| AluBI | AGCT | 6 cut(s) | 222, 324, 441, 803, 1236, 1251 |
| AluI | AGCT | 6 cut(s) | 222, 324, 441, 803, 1236, 1251 |
| Alw21I | GWGCWC | 1 cut(s) | 443 |
| Alw26I | GTCTC | 5 cut(s) | 36, 375, 544, 674, 915 |
| AlwI | GGATC | 3 cut(s) | 669, 1012, 1201 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 410, 502 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| AoxI | GGCC | 5 cut(s) | 266, 537, 876, 1058, 1063 |
| ApeKI | GCWGC | 4 cut(s) | 463, 760, 995, 1248 |
| ApoI | RAATTY | 1 cut(s) | 297 |
| AseI | ATTAAT | 1 cut(s) | 24 |
| AsiGI | ACCGGT | 1 cut(s) | 254 |
| AspLEI | GCGC | 2 cut(s) | 561, 633 |
| AspS9I | GGNCC | 3 cut(s) | 17, 488, 1042 |
| AsuHPI | GGTGA | 8 cut(s) | 70, 351, 380, 508, 719, 805, 852, 1084 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| AvaII | GGWCC | 3 cut(s) | 17, 488, 1042 |
| BalI | TGGCCA | 1 cut(s) | 1065 |
| BanII | GRGCYC | 2 cut(s) | 443, 1081 |
| BbsI | GAAGAC | 1 cut(s) | 1146 |
| Bbv12I | GWGCWC | 1 cut(s) | 443 |
| BbvI | GCAGC | 3 cut(s) | 475, 772, 982 |
| BccI | CCATC | 3 cut(s) | 666, 871, 959 |
| BciT130I | CCWGG | 1 cut(s) | 1062 |
| BcoDI | GTCTC | 5 cut(s) | 36, 375, 544, 674, 915 |
| BfmI | CTRYAG | 2 cut(s) | 503, 996 |
| BglII | AGATCT | 1 cut(s) | 1096 |
| BisI | GCNGC | 4 cut(s) | 464, 761, 996, 1249 |
| BlsI | GCNGC | 4 cut(s) | 465, 762, 997, 1250 |
| Bme1390I | CCNGG | 1 cut(s) | 1062 |
| Bme18I | GGWCC | 3 cut(s) | 17, 488, 1042 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmgT120I | GGNCC | 3 cut(s) | 17, 488, 1042 |
| BmiI | GGNNCC | 3 cut(s) | 11, 19, 489 |
| BmrFI | CCNGG | 1 cut(s) | 1062 |
| BmrI | ACTGGG | 1 cut(s) | 505 |
| BmsI | GCATC | 2 cut(s) | 159, 725 |
| BmuI | ACTGGG | 1 cut(s) | 505 |
| BpiI | GAAGAC | 1 cut(s) | 1146 |
| BpuEI | CTTGAG | 6 cut(s) | 124, 318, 329, 338, 440, 1151 |
| BsaHI | GRCGYC | 1 cut(s) | 643 |
| BsaI | GGTCTC | 3 cut(s) | 36, 375, 674 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 879, 1089 |
| BsaWI | WCCGGW | 1 cut(s) | 254 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 726, 896 |
| Bse118I | RCCGGY | 1 cut(s) | 254 |
| Bse1I | ACTGG | 3 cut(s) | 511, 1045, 1066 |
| Bse3DI | GCAATG | 3 cut(s) | 618, 891, 1206 |
| BseBI | CCWGG | 1 cut(s) | 1062 |
| BseDI | CCNNGG | 3 cut(s) | 13, 879, 1089 |
| BseGI | GGATG | 4 cut(s) | 716, 906, 967, 1187 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 726, 896 |
| BseMI | GCAATG | 3 cut(s) | 618, 891, 1206 |
| BseMII | CTCAG | 7 cut(s) | 150, 456, 489, 685, 930, 981, 1114 |
| BseNI | ACTGG | 3 cut(s) | 511, 1045, 1066 |
| BseRI | GAGGAG | 1 cut(s) | 1190 |
| BseXI | GCAGC | 3 cut(s) | 475, 772, 982 |
| Bsh1236I | CGCG | 1 cut(s) | 932 |
| BshFI | GGCC | 5 cut(s) | 268, 539, 878, 1060, 1065 |
| BshTI | ACCGGT | 1 cut(s) | 254 |
| BsiHKAI | GWGCWC | 1 cut(s) | 443 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BsiSI | CCGG | 2 cut(s) | 255, 536 |
| BslFI | GGGAC | 1 cut(s) | 757 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 726, 896 |
| BsmAI | GTCTC | 5 cut(s) | 36, 375, 544, 674, 915 |
| BsmBI | CGTCTC | 1 cut(s) | 544 |
| BsmFI | GGGAC | 1 cut(s) | 757 |
| BsmI | GAATGC | 1 cut(s) | 159 |
| BsnI | GGCC | 5 cut(s) | 268, 539, 878, 1060, 1065 |
| Bso31I | GGTCTC | 3 cut(s) | 36, 375, 674 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp1286I | GDGCHC | 2 cut(s) | 443, 1081 |
| Bsp143I | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| Bsp19I | CCATGG | 1 cut(s) | 879 |
| BspACI | CCGC | 1 cut(s) | 637 |
| BspANI | GGCC | 5 cut(s) | 268, 539, 878, 1060, 1065 |
| BspCNI | CTCAG | 7 cut(s) | 149, 455, 488, 684, 931, 982, 1113 |
| BspFNI | CGCG | 1 cut(s) | 932 |
| BspLI | GGNNCC | 3 cut(s) | 11, 19, 489 |
| BspMAI | CTGCAG | 2 cut(s) | 507, 1000 |
| BspPI | GGATC | 3 cut(s) | 669, 1012, 1201 |
| BspTNI | GGTCTC | 3 cut(s) | 36, 375, 674 |
| BsrDI | GCAATG | 3 cut(s) | 618, 891, 1206 |
| BsrFI | RCCGGY | 1 cut(s) | 254 |
| BsrI | ACTGG | 3 cut(s) | 511, 1045, 1066 |
| BssAI | RCCGGY | 1 cut(s) | 254 |
| BssECI | CCNNGG | 3 cut(s) | 13, 879, 1089 |
| BssMI | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| BssNI | GRCGYC | 1 cut(s) | 643 |
| BssT1I | CCWWGG | 3 cut(s) | 13, 879, 1089 |
| Bst2UI | CCWGG | 1 cut(s) | 1062 |
| Bst4CI | ACNGT | 6 cut(s) | 129, 234, 351, 1015, 1111, 1147 |
| Bst6I | CTCTTC | 1 cut(s) | 373 |
| BstACI | GRCGYC | 1 cut(s) | 643 |
| BstDEI | CTNAG | 8 cut(s) | 64, 136, 442, 475, 671, 939, 990, 1100 |
| BstDSI | CCRYGG | 1 cut(s) | 879 |
| BstEII | GGTNACC | 1 cut(s) | 707 |
| BstF5I | GGATG | 4 cut(s) | 716, 906, 967, 1187 |
| BstFNI | CGCG | 1 cut(s) | 932 |
| BstHHI | GCGC | 2 cut(s) | 561, 633 |
| BstKTI | GATC | 4 cut(s) | 677, 1020, 1099, 1196 |
| BstMAI | GTCTC | 5 cut(s) | 36, 375, 544, 674, 915 |
| BstMBI | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 447, 1085 |
| BstNI | CCWGG | 1 cut(s) | 1062 |
| BstPI | GGTNACC | 1 cut(s) | 707 |
| BstSCI | CCNGG | 1 cut(s) | 1060 |
| BstSFI | CTRYAG | 2 cut(s) | 503, 996 |
| BstUI | CGCG | 1 cut(s) | 932 |
| BstV1I | GCAGC | 3 cut(s) | 475, 772, 982 |
| BstV2I | GAAGAC | 1 cut(s) | 1146 |
| BstX2I | RGATCY | 2 cut(s) | 674, 1096 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 665 |
| BstYI | RGATCY | 2 cut(s) | 674, 1096 |
| BsuRI | GGCC | 5 cut(s) | 268, 539, 878, 1060, 1065 |
| BtgI | CCRYGG | 1 cut(s) | 879 |
| BtsCI | GGATG | 4 cut(s) | 716, 906, 967, 1187 |
| BtsI | GCAGTG | 1 cut(s) | 65 |
| BtsIMutI | CAGTG | 6 cut(s) | 65, 125, 230, 411, 1020, 1052 |
| CaiI | CAGNNNCTG | 2 cut(s) | 410, 502 |
| CfoI | GCGC | 2 cut(s) | 561, 633 |
| Cfr10I | RCCGGY | 1 cut(s) | 254 |
| Cfr13I | GGNCC | 3 cut(s) | 17, 488, 1042 |
| CseI | GACGC | 2 cut(s) | 651, 921 |
| Csp6I | GTAC | 4 cut(s) | 130, 258, 414, 1220 |
| CspAI | ACCGGT | 1 cut(s) | 254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 805, 840 |
| CviAII | CATG | 5 cut(s) | 98, 682, 880, 907, 1028 |
| CviQI | GTAC | 4 cut(s) | 130, 258, 414, 1220 |
| DdeI | CTNAG | 8 cut(s) | 64, 136, 442, 475, 671, 939, 990, 1100 |
| DpnI | GATC | 4 cut(s) | 676, 1019, 1098, 1195 |
| DpnII | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| EaeI | YGGCCR | 3 cut(s) | 537, 876, 1063 |
| Eam1104I | CTCTTC | 1 cut(s) | 373 |
| EarI | CTCTTC | 1 cut(s) | 373 |
| Ecl136II | GAGCTC | 1 cut(s) | 441 |
| Eco130I | CCWWGG | 3 cut(s) | 13, 879, 1089 |
| Eco147I | AGGCCT | 1 cut(s) | 1060 |
| Eco24I | GRGCYC | 2 cut(s) | 443, 1081 |
| Eco31I | GGTCTC | 3 cut(s) | 36, 375, 674 |
| Eco47I | GGWCC | 3 cut(s) | 17, 488, 1042 |
| Eco53kI | GAGCTC | 1 cut(s) | 441 |
| Eco57I | CTGAAG | 5 cut(s) | 149, 393, 752, 825, 1119 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| Eco91I | GGTNACC | 1 cut(s) | 707 |
| EcoICRI | GAGCTC | 1 cut(s) | 441 |
| EcoO109I | RGGNCCY | 2 cut(s) | 17, 488 |
| EcoO65I | GGTNACC | 1 cut(s) | 707 |
| EcoRII | CCWGG | 1 cut(s) | 1060 |
| EcoT14I | CCWWGG | 3 cut(s) | 13, 879, 1089 |
| EcoT38I | GRGCYC | 2 cut(s) | 443, 1081 |
| ErhI | CCWWGG | 3 cut(s) | 13, 879, 1089 |
| Esp3I | CGTCTC | 1 cut(s) | 544 |
| FaeI | CATG | 5 cut(s) | 101, 685, 883, 910, 1031 |
| FaiI | YATR | 6 cut(s) | 99, 683, 722, 881, 908, 1029 |
| FaqI | GGGAC | 1 cut(s) | 757 |
| FatI | CATG | 5 cut(s) | 97, 681, 879, 906, 1027 |
| FblI | GTMKAC | 1 cut(s) | 935 |
| Fnu4HI | GCNGC | 4 cut(s) | 464, 761, 996, 1249 |
| FokI | GGATG | 4 cut(s) | 703, 913, 974, 1194 |
| FriOI | GRGCYC | 2 cut(s) | 443, 1081 |
| Fsp4HI | GCNGC | 4 cut(s) | 464, 761, 996, 1249 |
| GlaI | GCGC | 2 cut(s) | 560, 632 |
| GluI | GCNGC | 4 cut(s) | 464, 761, 996, 1249 |
| HaeIII | GGCC | 5 cut(s) | 268, 539, 878, 1060, 1065 |
| HapII | CCGG | 2 cut(s) | 255, 536 |
| HgaI | GACGC | 2 cut(s) | 651, 921 |
| HhaI | GCGC | 2 cut(s) | 561, 633 |
| Hin1I | GRCGYC | 1 cut(s) | 643 |
| Hin1II | CATG | 5 cut(s) | 101, 685, 883, 910, 1031 |
| Hin6I | GCGC | 2 cut(s) | 559, 631 |
| HinP1I | GCGC | 2 cut(s) | 559, 631 |
| HincII | GTYRAC | 1 cut(s) | 826 |
| HindII | GTYRAC | 1 cut(s) | 826 |
| HindIII | AAGCTT | 1 cut(s) | 220 |
| HinfI | GANTC | 3 cut(s) | 75, 927, 969 |
| HpaII | CCGG | 2 cut(s) | 255, 536 |
| HphI | GGTGA | 8 cut(s) | 70, 351, 380, 508, 719, 805, 852, 1084 |
| Hpy166II | GTNNAC | 4 cut(s) | 516, 826, 936, 1033 |
| Hpy188I | TCNGA | 6 cut(s) | 168, 373, 445, 674, 991, 1138 |
| Hpy188III | TCNNGA | 3 cut(s) | 335, 419, 1168 |
| Hpy8I | GTNNAC | 4 cut(s) | 516, 826, 936, 1033 |
| HpyAV | CCTTC | 8 cut(s) | 368, 699, 742, 776, 800, 900, 938, 1033 |
| HpyCH4III | ACNGT | 6 cut(s) | 129, 234, 351, 1015, 1111, 1147 |
| HpyCH4V | TGCA | 8 cut(s) | 58, 450, 463, 505, 734, 924, 998, 1117 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 447, 1085 |
| HpyF3I | CTNAG | 8 cut(s) | 64, 136, 442, 475, 671, 939, 990, 1100 |
| Hsp92I | GRCGYC | 1 cut(s) | 643 |
| Hsp92II | CATG | 5 cut(s) | 101, 685, 883, 910, 1031 |
| HspAI | GCGC | 2 cut(s) | 559, 631 |
| Kzo9I | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| LmnI | GCTCC | 2 cut(s) | 15, 757 |
| Lsp1109I | GCAGC | 3 cut(s) | 475, 772, 982 |
| LweI | GCATC | 2 cut(s) | 159, 725 |
| MaeIII | GTNAC | 4 cut(s) | 328, 707, 970, 1009 |
| MalI | GATC | 4 cut(s) | 676, 1019, 1098, 1195 |
| MboI | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| MflI | RGATCY | 2 cut(s) | 674, 1096 |
| MhlI | GDGCHC | 2 cut(s) | 443, 1081 |
| MlsI | TGGCCA | 1 cut(s) | 1065 |
| MluCI | AATT | 2 cut(s) | 297, 752 |
| MluNI | TGGCCA | 1 cut(s) | 1065 |
| MlyI | GAGTC | 1 cut(s) | 978 |
| Mox20I | TGGCCA | 1 cut(s) | 1065 |
| MscI | TGGCCA | 1 cut(s) | 1065 |
| MseI | TTAA | 1 cut(s) | 24 |
| MslI | CAYNNNNRTG | 2 cut(s) | 663, 884 |
| Msp20I | TGGCCA | 1 cut(s) | 1065 |
| MspA1I | CMGCKG | 1 cut(s) | 1251 |
| MspI | CCGG | 2 cut(s) | 255, 536 |
| MspR9I | CCNGG | 1 cut(s) | 1062 |
| Mva1269I | GAATGC | 1 cut(s) | 159 |
| MvaI | CCWGG | 1 cut(s) | 1062 |
| MvnI | CGCG | 1 cut(s) | 932 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 447, 1085 |
| NcoI | CCATGG | 1 cut(s) | 879 |
| NdeII | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| NlaIII | CATG | 5 cut(s) | 101, 685, 883, 910, 1031 |
| NlaIV | GGNNCC | 3 cut(s) | 11, 19, 489 |
| NmuCI | GTSAC | 3 cut(s) | 707, 970, 1009 |
| PceI | AGGCCT | 1 cut(s) | 1060 |
| PctI | GAATGC | 1 cut(s) | 159 |
| PfeI | GAWTC | 2 cut(s) | 75, 927 |
| PinAI | ACCGGT | 1 cut(s) | 254 |
| PkrI | GCNGC | 4 cut(s) | 465, 762, 997, 1250 |
| PleI | GAGTC | 1 cut(s) | 977 |
| PpsI | GAGTC | 1 cut(s) | 977 |
| PpuMI | RGGWCCY | 2 cut(s) | 17, 488 |
| PshBI | ATTAAT | 1 cut(s) | 24 |
| Psp124BI | GAGCTC | 1 cut(s) | 443 |
| Psp5II | RGGWCCY | 2 cut(s) | 17, 488 |
| Psp6I | CCWGG | 1 cut(s) | 1060 |
| PspEI | GGTNACC | 1 cut(s) | 707 |
| PspGI | CCWGG | 1 cut(s) | 1060 |
| PspN4I | GGNNCC | 3 cut(s) | 11, 19, 489 |
| PspPI | GGNCC | 3 cut(s) | 17, 488, 1042 |
| PspPPI | RGGWCCY | 2 cut(s) | 17, 488 |
| PstI | CTGCAG | 2 cut(s) | 507, 1000 |
| PstNI | CAGNNNCTG | 2 cut(s) | 410, 502 |
| PsuI | RGATCY | 2 cut(s) | 674, 1096 |
| PvuII | CAGCTG | 1 cut(s) | 1251 |
| RsaI | GTAC | 4 cut(s) | 131, 259, 415, 1221 |
| RsaNI | GTAC | 4 cut(s) | 130, 258, 414, 1220 |
| RseI | CAYNNNNRTG | 2 cut(s) | 663, 884 |
| SacI | GAGCTC | 1 cut(s) | 443 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| SatI | GCNGC | 4 cut(s) | 464, 761, 996, 1249 |
| Sau3AI | GATC | 4 cut(s) | 674, 1017, 1096, 1193 |
| Sau96I | GGNCC | 3 cut(s) | 17, 488, 1042 |
| SchI | GAGTC | 1 cut(s) | 978 |
| ScrFI | CCNGG | 1 cut(s) | 1062 |
| SduI | GDGCHC | 2 cut(s) | 443, 1081 |
| SfaNI | GCATC | 2 cut(s) | 159, 725 |
| SfcI | CTRYAG | 2 cut(s) | 503, 996 |
| SinI | GGWCC | 3 cut(s) | 17, 488, 1042 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 663, 884 |
| SmlI | CTYRAG | 6 cut(s) | 103, 308, 317, 333, 419, 1166 |
| SmoI | CTYRAG | 6 cut(s) | 103, 308, 317, 333, 419, 1166 |
| Sse9I | AATT | 2 cut(s) | 297, 752 |
| SseBI | AGGCCT | 1 cut(s) | 1060 |
| SsiI | CCGC | 1 cut(s) | 637 |
| SspI | AATATT | 1 cut(s) | 1230 |
| SstI | GAGCTC | 1 cut(s) | 443 |
| StuI | AGGCCT | 1 cut(s) | 1060 |
| StyD4I | CCNGG | 1 cut(s) | 1060 |
| StyI | CCWWGG | 3 cut(s) | 13, 879, 1089 |
| TaaI | ACNGT | 6 cut(s) | 129, 234, 351, 1015, 1111, 1147 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TasI | AATT | 2 cut(s) | 297, 752 |
| TatI | WGTACW | 1 cut(s) | 1219 |
| TfiI | GAWTC | 2 cut(s) | 75, 927 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TscAI | CASTG | 6 cut(s) | 65, 132, 237, 411, 1020, 1052 |
| TseFI | GTSAC | 3 cut(s) | 707, 970, 1009 |
| TseI | GCWGC | 4 cut(s) | 463, 760, 995, 1248 |
| Tsp45I | GTSAC | 3 cut(s) | 707, 970, 1009 |
| TspDTI | ATGAA | 5 cut(s) | 665, 809, 858, 895, 1228 |
| TspRI | CASTG | 6 cut(s) | 65, 132, 237, 411, 1020, 1052 |
| VpaK11BI | GGWCC | 3 cut(s) | 17, 488, 1042 |
| VspI | ATTAAT | 1 cut(s) | 24 |
| XapI | RAATTY | 1 cut(s) | 297 |
| XmiI | GTMKAC | 1 cut(s) | 935 |