Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

15008847 .. 15012260

Gene Structure 3414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAAGAGGCTCCAAGGACCTATAAATCCCTGTTTCTTTGGAGACCATTTGGATTTGCAGTGCATAGACCCAGGATTCACCACCACCACCACCACACATGGCTTGAGATTTGAGGAAGAAGAGGAAGCACAATACCTCTCAGGGTTGGAAGATAGAATGCCATTTCTTCAGATGCTACAAAACATTGATTTCCCTCCTTGTGATTTCTCTCCAAAAGAGCCAAGCTTTCAAGCACTGTTGAGACTGCAGCTCCTCAACAAGGCCACCACAGCAGTATGGCCTGAAATGGGATATACCCAAAATGCCCAAATTCACACACTTGAAGCACTTGAGAGCTGTGTGACTCAAGACAATCAACAACAGTTGTATTCACCAGCAAAATCTGAAGGACAAAACCCTCACCAAAACAACACACTTTCAGTTTCTGGTACTCTTGAGGGTGGTGGTGGTGCGAGCTCAGATTGCAACCAAGAACTGCAACAACTCAACTCGGCAAAAATGACTCCTAACCAGACACAGTTCACCAAATCGGCTTCTACTCCGGCCACCCGAGAGAGACGAAAGCGCAAGAGAACAAGACCAACCAAGAACAAAGAAGAGGTAGAGAGCCAGAGAATGACCCACATTGCTGTTGAGCGAAACCGCAGACGCCAAATGAATGACCATCTCAATGTTCTCAGATCCCTCATGCCCCCTTCCTACATACAAAGGGGTGACCAAGCTTCCATCGTTGGGGGAGCAATAGACTTTGTGAAGGAATTGGAGCAGCACCTTCAGTCCCTTGAAGCACAAAAGAGAATGAGAAGAGCTGAAGGCTTTACCACCACCAATGTTGACCCTAACAATAACAACTCAATGACATCATCTTCGCCATCTTCATCATCAGCCATGACAATGCCTTCAAATGGGATGTTCATGTCTCTCTCCCAATGCAGAATCGGGTCGACTGAGGAAGGAAACACTCGTGGGGATGATGGAGTTACCGCACAAAACAAGTCTGAGGCTGCAGAAGTAGATGTCACAGTGATCCAAACCCATGTGAACTTGAAGGTTCAGTGTCAAAAGAGGCCTGGCCAGTTGGTGAGAGCCCTTGTTGCCTTTGAAGATATCAGGCTAACAGTTTTGCACCTCAACATTACTTCTTCAGAAGACAAGGTTCTTTACTCTTTCAATCTCAAGATTGAGGAGGGATGCAAGTTAGGATCAGCAGATGACATTGCTAGAGCAGTACATCAAATATTCAGCTTCATCAATGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

421

Amino Acids

46.84

Weight (kDa)

6.1

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	204 - 255	2.1e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	337 - 414	3.8e-10	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	2 cut(s)	643, 984
AclWI	GGATC	3 cut(s)	675, 1021, 1210
AcoI	YGGCCR	2 cut(s)	543, 1072
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	5 cut(s)	152, 405, 758, 831, 1128
AcyI	GRCGYC	1 cut(s)	649
AfaI	GTAC	2 cut(s)	430, 1230
AfiI	CCNNNNNNNGG	4 cut(s)	259, 287, 732, 905
AgsI	TTSAA	7 cut(s)	230, 323, 785, 903, 1048, 1103, 1171
AjnI	CCWGG	2 cut(s)	70, 1069
AluBI	AGCT	8 cut(s)	225, 250, 336, 456, 722, 809, 1245, 1260
AluI	AGCT	8 cut(s)	225, 250, 336, 456, 722, 809, 1245, 1260
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	4 cut(s)	36, 235, 550, 924
AlwI	GGATC	3 cut(s)	675, 1021, 1210
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	549
AoxI	GGCC	5 cut(s)	261, 278, 543, 1067, 1072
ApeKI	GCWGC	4 cut(s)	247, 766, 1004, 1257
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	850, 882
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	6 cut(s)	70, 363, 392, 514, 725, 1093
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	1074
BanII	GRGCYC	2 cut(s)	458, 1090
BauI	CACGAG	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	1155
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	259, 778, 991
BccI	CCATC	4 cut(s)	672, 734, 880, 968
BciT130I	CCWGG	2 cut(s)	72, 1071
BcoDI	GTCTC	4 cut(s)	36, 235, 550, 924
BfaI	CTAG	1 cut(s)	1221
BfmI	CTRYAG	2 cut(s)	245, 1005
BisI	GCNGC	4 cut(s)	248, 767, 1005, 1258
BlsI	GCNGC	4 cut(s)	249, 768, 1006, 1259
Bme1390I	CCNGG	2 cut(s)	72, 1071
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	72, 1071
BmsI	GCATC	2 cut(s)	162, 1181
BpiI	GAAGAC	1 cut(s)	1155
BpuEI	CTTGAG	5 cut(s)	124, 330, 350, 455, 1160
BsaHI	GRCGYC	1 cut(s)	649
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	13, 70
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 287, 732, 905
Bse1I	ACTGG	1 cut(s)	1075
Bse3DI	GCAATG	2 cut(s)	624, 1215
BseBI	CCWGG	2 cut(s)	72, 1071
BseDI	CCNNGG	2 cut(s)	13, 70
BseGI	GGATG	3 cut(s)	915, 976, 1196
BseLI	CCNNNNNNNGG	4 cut(s)	259, 287, 732, 905
BseMI	GCAATG	2 cut(s)	624, 1215
BseMII	CTCAG	5 cut(s)	153, 471, 691, 939, 990
BseNI	ACTGG	1 cut(s)	1075
BseRI	GAGGAG	2 cut(s)	242, 1199
BseXI	GCAGC	3 cut(s)	259, 778, 991
BshFI	GGCC	5 cut(s)	263, 280, 545, 1069, 1074
BsiHKAI	GWGCWC	1 cut(s)	458
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	4 cut(s)	259, 287, 732, 905
BsmAI	GTCTC	4 cut(s)	36, 235, 550, 924
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	5 cut(s)	263, 280, 545, 1069, 1074
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	2 cut(s)	458, 1090
Bsp143I	GATC	3 cut(s)	680, 1026, 1202
BspACI	CCGC	2 cut(s)	643, 984
BspANI	GGCC	5 cut(s)	263, 280, 545, 1069, 1074
BspCNI	CTCAG	5 cut(s)	152, 470, 690, 940, 991
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	2 cut(s)	249, 1009
BspPI	GGATC	3 cut(s)	675, 1021, 1210
BspQI	GCTCTTC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	624, 1215
BsrI	ACTGG	1 cut(s)	1075
BssECI	CCNNGG	2 cut(s)	13, 70
BssMI	GATC	3 cut(s)	680, 1026, 1202
BssNI	GRCGYC	1 cut(s)	649
BssSI	CACGAG	1 cut(s)	963
BssT1I	CCWWGG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	963
Bst2UI	CCWGG	2 cut(s)	72, 1071
Bst4CI	ACNGT	5 cut(s)	237, 363, 519, 1024, 1120
Bst6I	CTCTTC	3 cut(s)	114, 591, 799
BstACI	GRCGYC	1 cut(s)	649
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	5 cut(s)	139, 457, 677, 948, 999
BstEII	GGTNACC	1 cut(s)	713
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	915, 976, 1196
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	3 cut(s)	683, 1029, 1205
BstMAI	GTCTC	4 cut(s)	36, 235, 550, 924
BstMBI	GATC	3 cut(s)	680, 1026, 1202
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 462, 1094
BstNI	CCWGG	2 cut(s)	72, 1071
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	70, 1069
BstSFI	CTRYAG	2 cut(s)	245, 1005
BstV1I	GCAGC	3 cut(s)	259, 778, 991
BstV2I	GAAGAC	1 cut(s)	1155
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	5 cut(s)	263, 280, 545, 1069, 1074
BtsCI	GGATG	3 cut(s)	915, 976, 1196
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	4 cut(s)	65, 233, 1029, 1061
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	429, 1229
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	5 cut(s)	98, 688, 889, 916, 1037
CviQI	GTAC	2 cut(s)	429, 1229
DdeI	CTNAG	5 cut(s)	139, 457, 677, 948, 999
DpnI	GATC	3 cut(s)	682, 1028, 1204
DpnII	GATC	3 cut(s)	680, 1026, 1202
EaeI	YGGCCR	2 cut(s)	543, 1072
Eam1104I	CTCTTC	3 cut(s)	114, 591, 799
EarI	CTCTTC	3 cut(s)	114, 591, 799
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	1069
Eco24I	GRGCYC	2 cut(s)	458, 1090
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	1108
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	5 cut(s)	152, 405, 758, 831, 1128
Eco88I	CYCGRG	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	70, 1069
EcoRV	GATATC	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	2 cut(s)	458, 1090
ErhI	CCWWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	5 cut(s)	101, 691, 892, 919, 1040
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	5 cut(s)	97, 687, 888, 915, 1036
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	4 cut(s)	248, 767, 1005, 1258
FokI	GGATG	3 cut(s)	922, 983, 1203
FriOI	GRGCYC	2 cut(s)	458, 1090
Fsp4HI	GCNGC	4 cut(s)	248, 767, 1005, 1258
FspBI	CTAG	1 cut(s)	1221
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	248, 767, 1005, 1258
HaeIII	GGCC	5 cut(s)	263, 280, 545, 1069, 1074
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	649
Hin1II	CATG	5 cut(s)	101, 691, 892, 919, 1040
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	2 cut(s)	835, 945
HindII	GTYRAC	2 cut(s)	835, 945
HindIII	AAGCTT	2 cut(s)	223, 720
HinfI	GANTC	4 cut(s)	75, 343, 502, 936
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	6 cut(s)	70, 363, 392, 514, 725, 1093
Hpy166II	GTNNAC	4 cut(s)	522, 835, 945, 1042
Hpy188I	TCNGA	6 cut(s)	171, 385, 460, 680, 1000, 1147
Hpy188III	TCNNGA	3 cut(s)	347, 434, 1177
Hpy8I	GTNNAC	4 cut(s)	522, 835, 945, 1042
HpyAV	CCTTC	8 cut(s)	380, 705, 748, 782, 806, 909, 947, 1042
HpyCH4III	ACNGT	5 cut(s)	237, 363, 519, 1024, 1120
HpyCH4V	TGCA	9 cut(s)	58, 63, 247, 465, 478, 933, 1007, 1126, 1194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 462, 1094
HpyF3I	CTNAG	5 cut(s)	139, 457, 677, 948, 999
Hsp92I	GRCGYC	1 cut(s)	649
Hsp92II	CATG	5 cut(s)	101, 691, 892, 919, 1040
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	680, 1026, 1202
LguI	GCTCTTC	1 cut(s)	799
LmnI	GCTCC	4 cut(s)	15, 255, 737, 763
Lsp1109I	GCAGC	3 cut(s)	259, 778, 991
LweI	GCATC	2 cut(s)	162, 1181
MaeI	CTAG	1 cut(s)	1221
MaeIII	GTNAC	4 cut(s)	340, 713, 979, 1018
MalI	GATC	3 cut(s)	682, 1028, 1204
MboI	GATC	3 cut(s)	680, 1026, 1202
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	2 cut(s)	458, 1090
MlsI	TGGCCA	1 cut(s)	1074
MluCI	AATT	2 cut(s)	309, 758
MluNI	TGGCCA	1 cut(s)	1074
MlyI	GAGTC	2 cut(s)	337, 496
MmeI	TCCRAC	1 cut(s)	126
Mox20I	TGGCCA	1 cut(s)	1074
MscI	TGGCCA	1 cut(s)	1074
MslI	CAYNNNNRTG	2 cut(s)	669, 893
Msp20I	TGGCCA	1 cut(s)	1074
MspA1I	CMGCKG	1 cut(s)	1260
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	72, 1071
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	72, 1071
MwoI	GCNNNNNNNGC	3 cut(s)	269, 462, 1094
NdeII	GATC	3 cut(s)	680, 1026, 1202
NlaIII	CATG	5 cut(s)	101, 691, 892, 919, 1040
NlaIV	GGNNCC	1 cut(s)	11
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	3 cut(s)	340, 713, 1018
PceI	AGGCCT	1 cut(s)	1069
PciSI	GCTCTTC	1 cut(s)	799
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	75, 936
PkrI	GCNGC	4 cut(s)	249, 768, 1006, 1259
PleI	GAGTC	2 cut(s)	337, 496
PpsI	GAGTC	2 cut(s)	337, 496
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	70, 1069
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	70, 1069
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PstI	CTGCAG	2 cut(s)	249, 1009
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	1260
RsaI	GTAC	2 cut(s)	430, 1230
RsaNI	GTAC	2 cut(s)	429, 1229
RseI	CAYNNNNRTG	2 cut(s)	669, 893
SacI	GAGCTC	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	799
SatI	GCNGC	4 cut(s)	248, 767, 1005, 1258
Sau3AI	GATC	3 cut(s)	680, 1026, 1202
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	2 cut(s)	337, 496
ScrFI	CCNGG	2 cut(s)	72, 1071
SduI	GDGCHC	2 cut(s)	458, 1090
SfaNI	GCATC	2 cut(s)	162, 1181
SfcI	CTRYAG	2 cut(s)	245, 1005
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	669, 893
SmlI	CTYRAG	5 cut(s)	103, 329, 345, 434, 1175
SmoI	CTYRAG	5 cut(s)	103, 329, 345, 434, 1175
Sse9I	AATT	2 cut(s)	309, 758
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	2 cut(s)	643, 984
SspI	AATATT	1 cut(s)	1239
SspMI	CTAG	1 cut(s)	1221
SstI	GAGCTC	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	2 cut(s)	70, 1069
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	5 cut(s)	237, 363, 519, 1024, 1120
TaqI	TCGA	1 cut(s)	944
TasI	AATT	2 cut(s)	309, 758
TatI	WGTACW	1 cut(s)	1228
TfiI	GAWTC	2 cut(s)	75, 936
TscAI	CASTG	4 cut(s)	65, 240, 1029, 1061
TseFI	GTSAC	3 cut(s)	340, 713, 1018
TseI	GCWGC	4 cut(s)	247, 766, 1004, 1257
Tsp45I	GTSAC	3 cut(s)	340, 713, 1018
TspDTI	ATGAA	5 cut(s)	17, 671, 867, 904, 1237
TspRI	CASTG	4 cut(s)	65, 240, 1029, 1061
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	944
XspI	CTAG	1 cut(s)	1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.