Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

12286859 .. 12288684

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGTGTTGCAGCAGTTCTTTGGTGAGCATTTGGATTTTCCGTTCGAGCAAAGTTTGAATTTCACCACAGAAAGCTTGAGATTTGAGGAGGAAGAAGAATCCCACAACCACCACCTCTCATTGCCAAGCTTGGATGACAGAATGCCATTTCTCCAGATGCTACAAAGTGTTGATTCCTCCACCACCACCACCACACCTTATTTTCCATTGAAGGAGCCAAGCTTTCAAGCACTTTTGAAACTCCAACACTTCAAAAAACCATGGGAGTTGGACAAAAATTACATGCCTGAAATGGAAACCCCAATTCAGAAAGCTCTGGAGCTTGAGAGCTGTGTGACCCATGAAATGGTTGAGCTGCAACATTCACCTGTTAAATCAGAAGGGAAAGACTCTCATCTCCACCATTCTATTTCTGAGTGCAACCAAGGGGAAGAAAAACCCAGCTCAGTTGCTGGGTCTCCACCACCACCGACCTGGATTCGGGTACAAAATGGTGCTGAGAAAACCCAGCAACCCAAATTTACTCCGGCCACCAGGGAGAGGAGAAAGCGGAAGAGAACAAGGCCAACCAAGAACAAGGAAGAAGTGGAGAGCCAGCGGATGACCCACATTGCGGTGGAGCGCAACCGCCGCCGCCAGATGAATGACCATCTCAATGTCCTCAGGTCCCTCATGCCCACCTCCTACATTCAAAGGGGTGACCAAGCATCAATTGTTGGGGGTGCAATAGATTTCGTGAAGGAATTGGAGCAGCTACTTCATTCCCTTGAAGCCCAAAAGAGAATGAGAAAAGCAGCTGATCAAATTCAAGGGATGAGCAATAATGGTGACAACAACAGCTCTTTCAGCTCCTCATCAGCATCCTCCTCTTCTCCCTGCAGCATGGCAATGCCATCCAATGGAATGTTCATGACTCTCTCCCAATGCAGAATTGGGTCTCATGATCAAGAAAGCACCACTGCCACCGCCGCCCCCGCCACCTTCGACGATGAAGGCACTGCTCAGAACAAGTCTGAGGCTGCAGACATAGATGTCACTGTGATCCAATCCCATGTCAACTTAAAAGTGAAGTGCCAAAGGAGAGCTGGACAGCTGATGAAAGCCATTGTTGCACTGGAAGATCGTCGGCTAACTGTTTTGCACCTCAACATTACATCATCACAAGACACTGTTCTTTACTCTTTCAATCTCGAGATAGAAGAAGGTTGTAATTTAGGATCAGCAGATGAAATTGCAAAAGCAGTACATCAAATATTCAGCTTCATCAATGGCAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

427

Amino Acids

47.97

Weight (kDa)

5.96

Isoelectric Point (pI)

64.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	199 - 250	1.3e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	343 - 419	7e-08	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1031
AccB7I	CCANNNNNTGG	2 cut(s)	346, 899
AciI	CCGC	9 cut(s)	550, 598, 614, 628, 631, 634, 966, 969, 975
AclWI	GGATC	2 cut(s)	1036, 1225
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	3 cut(s)	58, 518, 804
AfaI	GTAC	2 cut(s)	486, 1245
AfiI	CCNNNNNNNGG	5 cut(s)	346, 480, 540, 613, 899
AgsI	TTSAA	9 cut(s)	58, 211, 227, 238, 253, 692, 770, 809, 1186
AjnI	CCWGG	2 cut(s)	473, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	890, 922
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw26I	GTCTC	2 cut(s)	462, 942
AlwI	GGATC	2 cut(s)	1036, 1225
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	1190
AoxI	GGCC	2 cut(s)	528, 563
ApeKI	GCWGC	7 cut(s)	10, 355, 751, 794, 879, 1019, 1272
ApoI	RAATTY	3 cut(s)	58, 518, 804
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	666
AsuHPI	GGTGA	5 cut(s)	35, 55, 357, 710, 839
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	1 cut(s)	666
AxyI	CCTNAGG	1 cut(s)	662
BbvI	GCAGC	6 cut(s)	22, 342, 763, 806, 891, 1006
BccI	CCATC	2 cut(s)	657, 901
BciT130I	CCWGG	2 cut(s)	475, 535
BclI	TGATCA	2 cut(s)	799, 943
BcoDI	GTCTC	2 cut(s)	462, 942
BfmI	CTRYAG	2 cut(s)	877, 1020
Bme1390I	CCNGG	2 cut(s)	475, 535
Bme18I	GGWCC	1 cut(s)	666
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	2 cut(s)	216, 668
BmrFI	CCNGG	2 cut(s)	475, 535
BmsI	GCATC	3 cut(s)	147, 716, 869
BpmI	CTGGAG	2 cut(s)	137, 338
BpuEI	CTTGAG	2 cut(s)	97, 344
BsaI	GGTCTC	2 cut(s)	462, 942
BsaJI	CCNNGG	3 cut(s)	260, 424, 534
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 480, 540, 613, 899
Bse1I	ACTGG	1 cut(s)	1119
Bse21I	CCTNAGG	1 cut(s)	662
Bse3DI	GCAATG	3 cut(s)	119, 609, 894
BseBI	CCWGG	2 cut(s)	475, 535
BseDI	CCNNGG	3 cut(s)	260, 424, 534
BseGI	GGATG	5 cut(s)	139, 606, 819, 860, 893
BseLI	CCNNNNNNNGG	5 cut(s)	346, 480, 540, 613, 899
BseMI	GCAATG	3 cut(s)	119, 609, 894
BseMII	CTCAG	6 cut(s)	405, 459, 489, 676, 1005, 1016
BseNI	ACTGG	1 cut(s)	1119
BseRI	GAGGAG	4 cut(s)	101, 556, 841, 856
BseXI	GCAGC	6 cut(s)	22, 342, 763, 806, 891, 1006
BseYI	CCCAGC	3 cut(s)	440, 452, 507
BshFI	GGCC	2 cut(s)	530, 565
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	5 cut(s)	346, 480, 540, 613, 899
BsmAI	GTCTC	2 cut(s)	462, 942
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	530, 565
Bso31I	GGTCTC	2 cut(s)	462, 942
BsoBI	CYCGRG	1 cut(s)	1190
Bsp143I	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	9 cut(s)	550, 598, 614, 628, 631, 634, 966, 969, 975
BspANI	GGCC	2 cut(s)	530, 565
BspCNI	CTCAG	6 cut(s)	406, 458, 490, 675, 1006, 1015
BspHI	TCATGA	2 cut(s)	909, 940
BspLI	GGNNCC	2 cut(s)	216, 668
BspMAI	CTGCAG	2 cut(s)	881, 1024
BspPI	GGATC	2 cut(s)	1036, 1225
BspTNI	GGTCTC	2 cut(s)	462, 942
BsrDI	GCAATG	3 cut(s)	119, 609, 894
BsrI	ACTGG	1 cut(s)	1119
BssECI	CCNNGG	3 cut(s)	260, 424, 534
BssMI	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
BssT1I	CCWWGG	2 cut(s)	260, 424
Bst2UI	CCWGG	2 cut(s)	475, 535
Bst4CI	ACNGT	3 cut(s)	1039, 1135, 1171
Bst6I	CTCTTC	2 cut(s)	548, 874
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	6 cut(s)	414, 445, 498, 662, 1002, 1014
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	5 cut(s)	139, 606, 819, 860, 893
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	5 cut(s)	802, 946, 1044, 1123, 1220
BstMAI	GTCTC	2 cut(s)	462, 942
BstMBI	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
BstMWI	GCNNNNNNNGC	5 cut(s)	630, 846, 968, 974, 1109
BstNI	CCWGG	2 cut(s)	475, 535
BstNSI	RCATGY	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	473, 533
BstSFI	CTRYAG	2 cut(s)	877, 1020
BstV1I	GCAGC	6 cut(s)	22, 342, 763, 806, 891, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	530, 565
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	139, 606, 819, 860, 893
BtsI	GCAGTG	2 cut(s)	957, 996
BtsIMutI	CAGTG	5 cut(s)	957, 996, 1035, 1112, 1167
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	2 cut(s)	909, 940
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	485, 1244
CviAII	CATG	8 cut(s)	261, 283, 341, 673, 883, 910, 941, 1052
CviQI	GTAC	2 cut(s)	485, 1244
DdeI	CTNAG	6 cut(s)	414, 445, 498, 662, 1002, 1014
DpnI	GATC	5 cut(s)	801, 945, 1043, 1122, 1219
DpnII	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	548, 874
EarI	CTCTTC	2 cut(s)	548, 874
Eco130I	CCWWGG	2 cut(s)	260, 424
Eco31I	GGTCTC	2 cut(s)	462, 942
Eco47I	GGWCC	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	1190
Eco91I	GGTNACC	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	666
EcoO65I	GGTNACC	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	473, 533
EcoT14I	CCWWGG	2 cut(s)	260, 424
ErhI	CCWWGG	2 cut(s)	260, 424
FaeI	CATG	8 cut(s)	264, 286, 344, 676, 886, 913, 944, 1055
FaiI	YATR	9 cut(s)	262, 284, 342, 674, 884, 911, 942, 1028, 1053
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	8 cut(s)	260, 282, 340, 672, 882, 909, 940, 1051
FauI	CCCGC	1 cut(s)	982
FbaI	TGATCA	2 cut(s)	799, 943
FokI	GGATG	5 cut(s)	146, 613, 826, 847, 880
GlaI	GCGC	1 cut(s)	623
GsaI	CCCAGC	3 cut(s)	444, 456, 511
GsuI	CTGGAG	2 cut(s)	137, 338
HaeIII	GGCC	2 cut(s)	530, 565
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	8 cut(s)	264, 286, 344, 676, 886, 913, 944, 1055
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	3 cut(s)	73, 127, 220
HinfI	GANTC	5 cut(s)	98, 173, 389, 478, 913
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	5 cut(s)	35, 55, 357, 710, 839
Hpy166II	GTNNAC	1 cut(s)	1057
Hpy188I	TCNGA	5 cut(s)	309, 379, 415, 1005, 1015
Hpy188III	TCNNGA	8 cut(s)	154, 317, 736, 910, 941, 947, 1190, 1192
Hpy8I	GTNNAC	1 cut(s)	1057
Hpy99I	CGWCG	2 cut(s)	989, 1128
HpyAV	CCTTC	6 cut(s)	205, 374, 733, 986, 991, 1196
HpyCH4III	ACNGT	3 cut(s)	1039, 1135, 1171
HpyF10VI	GCNNNNNNNGC	5 cut(s)	630, 846, 968, 974, 1109
HpyF3I	CTNAG	6 cut(s)	414, 445, 498, 662, 1002, 1014
Hsp92II	CATG	8 cut(s)	264, 286, 344, 676, 886, 913, 944, 1055
HspAI	GCGC	1 cut(s)	622
Ksp22I	TGATCA	2 cut(s)	799, 943
Kzo9I	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
LmnI	GCTCC	5 cut(s)	214, 319, 619, 748, 854
Lsp1109I	GCAGC	6 cut(s)	22, 342, 763, 806, 891, 1006
LweI	GCATC	3 cut(s)	147, 716, 869
MaeIII	GTNAC	4 cut(s)	334, 698, 827, 1033
MalI	GATC	5 cut(s)	801, 945, 1043, 1122, 1219
MboI	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
MboII	GAAGA	8 cut(s)	104, 107, 443, 565, 593, 861, 1130, 1211
MfeI	CAATTG	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	383, 907
MmeI	TCCRAC	2 cut(s)	249, 268
MseI	TTAA	2 cut(s)	372, 1061
MslI	CAYNNNNRTG	3 cut(s)	614, 654, 887
MspA1I	CMGCKG	3 cut(s)	598, 797, 1093
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	475, 535
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	475, 535
MwoI	GCNNNNNNNGC	5 cut(s)	630, 846, 968, 974, 1109
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
NlaIII	CATG	8 cut(s)	264, 286, 344, 676, 886, 913, 944, 1055
NlaIV	GGNNCC	2 cut(s)	216, 668
NmuCI	GTSAC	4 cut(s)	334, 698, 827, 1033
NspI	RCATGY	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	1190
PagI	TCATGA	2 cut(s)	909, 940
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	98, 173, 478
PflMI	CCANNNNNTGG	2 cut(s)	346, 899
PleI	GAGTC	2 cut(s)	383, 907
PpsI	GAGTC	2 cut(s)	383, 907
PpuMI	RGGWCCY	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	473, 533
PspEI	GGTNACC	1 cut(s)	698
PspFI	CCCAGC	3 cut(s)	440, 452, 507
PspGI	CCWGG	2 cut(s)	473, 533
PspN4I	GGNNCC	2 cut(s)	216, 668
PspPI	GGNCC	1 cut(s)	666
PspPPI	RGGWCCY	1 cut(s)	666
PstI	CTGCAG	2 cut(s)	881, 1024
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	797, 1093
RsaI	GTAC	2 cut(s)	486, 1245
RsaNI	GTAC	2 cut(s)	485, 1244
RseI	CAYNNNNRTG	3 cut(s)	614, 654, 887
SaqAI	TTAA	2 cut(s)	372, 1061
Sau3AI	GATC	5 cut(s)	799, 943, 1041, 1120, 1217
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	2 cut(s)	383, 907
ScrFI	CCNGG	2 cut(s)	475, 535
SfaNI	GCATC	3 cut(s)	147, 716, 869
SfcI	CTRYAG	2 cut(s)	877, 1020
Sfr274I	CTCGAG	1 cut(s)	1190
SinI	GGWCC	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	1190
SmiMI	CAYNNNNRTG	3 cut(s)	614, 654, 887
SmlI	CTYRAG	3 cut(s)	76, 323, 1190
SmoI	CTYRAG	3 cut(s)	76, 323, 1190
SsiI	CCGC	9 cut(s)	550, 598, 614, 628, 631, 634, 966, 969, 975
SspI	AATATT	1 cut(s)	1254
StyD4I	CCNGG	2 cut(s)	473, 533
StyI	CCWWGG	2 cut(s)	260, 424
TaaI	ACNGT	3 cut(s)	1039, 1135, 1171
TaqI	TCGA	3 cut(s)	45, 984, 1191
TatI	WGTACW	1 cut(s)	1243
TauI	GCSGC	3 cut(s)	633, 636, 971
TfiI	GAWTC	3 cut(s)	98, 173, 478
Tru1I	TTAA	2 cut(s)	372, 1061
Tru9I	TTAA	2 cut(s)	372, 1061
TscAI	CASTG	5 cut(s)	964, 1003, 1042, 1119, 1174
TseFI	GTSAC	4 cut(s)	334, 698, 827, 1033
TseI	GCWGC	7 cut(s)	10, 355, 751, 794, 879, 1019, 1272
Tsp45I	GTSAC	4 cut(s)	334, 698, 827, 1033
TspDTI	ATGAA	8 cut(s)	357, 656, 749, 898, 1005, 1112, 1242, 1252
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	5 cut(s)	964, 1003, 1042, 1119, 1174
Van91I	CCANNNNNTGG	2 cut(s)	346, 899
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	3 cut(s)	58, 518, 804
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	4 cut(s)	471, 929, 1082, 1111
XhoI	CTCGAG	1 cut(s)	1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.