Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Reverse (-)

15303002 .. 15305646

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAAATACCCAAAGTTCCCAAATTCACACACTTGAGGCACTTGAGAGCTGTGTAACTCAAGACAATCAACAACAGTTGTATTCACCAGCAAAATCTGAAGGAAGAGACCCTCACCAAAACCCTCTTTCAGTTTCTGGTACTCTTGAGGGTGGTGGTGGTGTGAGCTCGGATTGCAACCAAGAAATGCAGCAACTCAACTCAGCGAAAATGGGTCCTAACCAGACCCTGCAGACCCAGTTCACCAAGTCGGCTTCTTCTCCGGCCACCCGAGAGAGACGAAAGCGCAAGAGAACAAGACCAATCAAGAACAAAGAGGAAGTAGAGAGCCAGAGAATGACCCACATTGCTGTTGAGCGCAACCGCAGACGCCAAATGAATGACCATCTCAATGGTCTCAGATCCCTCATGCCCCCTTCGTACATTCAAAGGGGTGACCAAGCATCCATAGTTGGGGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGCACCTTCAGTCCCTTGAAGCCCAAAAGAGAATGAAAAGAGCTGAAGGCTTCACCACCAATGTTGACCCTAACAATAACAACTCCTTGAACTCATCTTCACCATCTTCATCATCGGCCATGGCAATGCCTTCAAATGGGATGTTCATGTCTCTCTCCCAATGCAGAATCGCGTCTACTGAGGAAGGTAACACTTGTGGGGATGATGGAGTCACAGCACAAAACAAGTCTGAGGCTGCAGAAGTAGATGTCACAGTGATCCAAACCCATGTGAACTTGAAGGTCCAGTGTCAAAAGAGGCCTGGCCAGTTGGTGAGAGCCCTTATTGCCTTGGAAGACCTCAGGCTAACAGTTTTGCACCTCAACATTACTTCTTCAGAAGACAATGTTCTTTACTCTTTCAATCTCAAGATTGAGGAGGGATGTAAGTTAGGATCAGCAGATAACATTGCCAGAGCAGTACATCAAATATTCAGCTTCATCAATGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

326

Amino Acids

35.93

Weight (kDa)

7.09

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	111 - 162	2e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	243 - 320	1.2e-10	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	662
AccII	CGCG	1 cut(s)	659
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	3 cut(s)	396, 739, 928
AcoI	YGGCCR	3 cut(s)	264, 603, 790
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	4 cut(s)	120, 479, 552, 846
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	3 cut(s)	142, 422, 948
AfiI	CCNNNNNNNGG	2 cut(s)	453, 623
AgsI	TTSAA	6 cut(s)	428, 506, 577, 621, 766, 889
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	5 cut(s)	51, 168, 530, 963, 978
AluI	AGCT	5 cut(s)	51, 168, 530, 963, 978
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	4 cut(s)	102, 271, 401, 642
AlwI	GGATC	3 cut(s)	396, 739, 928
AlwNI	CAGNNNCTG	2 cut(s)	137, 229
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	4 cut(s)	264, 603, 785, 790
ApeKI	GCWGC	4 cut(s)	190, 487, 722, 975
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	288, 360
AspS9I	GGNCC	2 cut(s)	215, 769
AsuHPI	GGTGA	7 cut(s)	78, 107, 235, 446, 532, 579, 811
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	215, 769
AxyI	CCTNAGG	1 cut(s)	827
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	2 cut(s)	170, 808
BbsI	GAAGAC	2 cut(s)	828, 873
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	202, 499, 709
BccI	CCATC	3 cut(s)	393, 598, 686
BciT130I	CCWGG	1 cut(s)	789
BcoDI	GTCTC	4 cut(s)	102, 271, 401, 642
BfmI	CTRYAG	2 cut(s)	230, 723
BisI	GCNGC	4 cut(s)	191, 488, 723, 976
BlsI	GCNGC	4 cut(s)	192, 489, 724, 977
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	2 cut(s)	215, 769
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	215, 769
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	789
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	828, 873
BpuEI	CTTGAG	5 cut(s)	45, 56, 65, 167, 878
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	2 cut(s)	102, 401
BsaJI	CCNNGG	2 cut(s)	606, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 623
Bse1I	ACTGG	3 cut(s)	238, 772, 793
Bse21I	CCTNAGG	1 cut(s)	827
Bse3DI	GCAATG	3 cut(s)	345, 618, 933
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	2 cut(s)	606, 816
BseGI	GGATG	4 cut(s)	443, 633, 694, 914
BseLI	CCNNNNNNNGG	2 cut(s)	453, 623
BseMI	GCAATG	3 cut(s)	345, 618, 933
BseMII	CTCAG	5 cut(s)	216, 412, 657, 708, 841
BseNI	ACTGG	3 cut(s)	238, 772, 793
BseRI	GAGGAG	1 cut(s)	917
BseXI	GCAGC	3 cut(s)	202, 499, 709
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	4 cut(s)	266, 605, 787, 792
BsiHKAI	GWGCWC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	453, 623
BsmAI	GTCTC	4 cut(s)	102, 271, 401, 642
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	266, 605, 787, 792
Bso31I	GGTCTC	2 cut(s)	102, 401
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	170, 808
Bsp143I	GATC	3 cut(s)	401, 744, 920
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	4 cut(s)	266, 605, 787, 792
BspCNI	CTCAG	5 cut(s)	215, 411, 658, 709, 840
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	2 cut(s)	234, 727
BspPI	GGATC	3 cut(s)	396, 739, 928
BspTNI	GGTCTC	2 cut(s)	102, 401
BsrDI	GCAATG	3 cut(s)	345, 618, 933
BsrI	ACTGG	3 cut(s)	238, 772, 793
BssECI	CCNNGG	2 cut(s)	606, 816
BssMI	GATC	3 cut(s)	401, 744, 920
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	606, 816
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	3 cut(s)	78, 742, 838
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	370
BstDEI	CTNAG	5 cut(s)	202, 398, 666, 717, 827
BstDSI	CCRYGG	1 cut(s)	606
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	4 cut(s)	443, 633, 694, 914
BstFNI	CGCG	1 cut(s)	659
BstHHI	GCGC	2 cut(s)	288, 360
BstKTI	GATC	3 cut(s)	404, 747, 923
BstMAI	GTCTC	4 cut(s)	102, 271, 401, 642
BstMBI	GATC	3 cut(s)	401, 744, 920
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 812
BstNI	CCWGG	1 cut(s)	789
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	787
BstSFI	CTRYAG	2 cut(s)	230, 723
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	3 cut(s)	202, 499, 709
BstV2I	GAAGAC	2 cut(s)	828, 873
BstX2I	RGATCY	1 cut(s)	401
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	401
Bsu36I	CCTNAGG	1 cut(s)	827
BsuRI	GGCC	4 cut(s)	266, 605, 787, 792
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	4 cut(s)	443, 633, 694, 914
BtsIMutI	CAGTG	2 cut(s)	747, 779
CaiI	CAGNNNCTG	2 cut(s)	137, 229
CfoI	GCGC	2 cut(s)	288, 360
Cfr13I	GGNCC	2 cut(s)	215, 769
CseI	GACGC	2 cut(s)	378, 648
Csp6I	GTAC	3 cut(s)	141, 421, 947
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	4 cut(s)	409, 607, 634, 755
CviQI	GTAC	3 cut(s)	141, 421, 947
DdeI	CTNAG	5 cut(s)	202, 398, 666, 717, 827
DpnI	GATC	3 cut(s)	403, 746, 922
DpnII	GATC	3 cut(s)	401, 744, 920
EaeI	YGGCCR	3 cut(s)	264, 603, 790
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	606, 816
Eco147I	AGGCCT	1 cut(s)	787
Eco24I	GRGCYC	2 cut(s)	170, 808
Eco31I	GGTCTC	2 cut(s)	102, 401
Eco47I	GGWCC	2 cut(s)	215, 769
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	4 cut(s)	120, 479, 552, 846
Eco81I	CCTNAGG	1 cut(s)	827
Eco88I	CYCGRG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	787
EcoT14I	CCWWGG	2 cut(s)	606, 816
EcoT38I	GRGCYC	2 cut(s)	170, 808
ErhI	CCWWGG	2 cut(s)	606, 816
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	4 cut(s)	412, 610, 637, 758
FaiI	YATR	5 cut(s)	410, 449, 608, 635, 756
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	408, 606, 633, 754
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	4 cut(s)	191, 488, 723, 976
FokI	GGATG	4 cut(s)	430, 640, 701, 921
FriOI	GRGCYC	2 cut(s)	170, 808
Fsp4HI	GCNGC	4 cut(s)	191, 488, 723, 976
GlaI	GCGC	2 cut(s)	287, 359
GluI	GCNGC	4 cut(s)	191, 488, 723, 976
HaeIII	GGCC	4 cut(s)	266, 605, 787, 792
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	2 cut(s)	378, 648
HhaI	GCGC	2 cut(s)	288, 360
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	412, 610, 637, 758
Hin6I	GCGC	2 cut(s)	286, 358
HinP1I	GCGC	2 cut(s)	286, 358
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	2 cut(s)	654, 696
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	7 cut(s)	78, 107, 235, 446, 532, 579, 811
Hpy166II	GTNNAC	4 cut(s)	243, 553, 663, 760
Hpy188I	TCNGA	5 cut(s)	100, 172, 401, 718, 865
Hpy188III	TCNNGA	4 cut(s)	62, 146, 307, 895
Hpy8I	GTNNAC	4 cut(s)	243, 553, 663, 760
HpyAV	CCTTC	8 cut(s)	95, 426, 469, 503, 527, 627, 665, 760
HpyCH4III	ACNGT	3 cut(s)	78, 742, 838
HpyCH4V	TGCA	7 cut(s)	177, 190, 232, 461, 651, 725, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 812
HpyF3I	CTNAG	5 cut(s)	202, 398, 666, 717, 827
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	412, 610, 637, 758
HspAI	GCGC	2 cut(s)	286, 358
Kzo9I	GATC	3 cut(s)	401, 744, 920
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	3 cut(s)	202, 499, 709
LweI	GCATC	1 cut(s)	452
MaeIII	GTNAC	5 cut(s)	55, 434, 674, 697, 736
MalI	GATC	3 cut(s)	403, 746, 922
MboI	GATC	3 cut(s)	401, 744, 920
MboII	GAAGA	7 cut(s)	117, 249, 576, 585, 833, 852, 878
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	170, 808
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	2 cut(s)	24, 479
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	705
Mox20I	TGGCCA	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	792
MslI	CAYNNNNRTG	2 cut(s)	390, 611
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	789
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	2 cut(s)	174, 812
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	3 cut(s)	401, 744, 920
NlaIII	CATG	4 cut(s)	412, 610, 637, 758
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	434, 697, 736
PceI	AGGCCT	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	4 cut(s)	192, 489, 724, 977
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	787
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	215, 769
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	2 cut(s)	234, 727
PstNI	CAGNNNCTG	2 cut(s)	137, 229
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	3 cut(s)	142, 422, 948
RsaNI	GTAC	3 cut(s)	141, 421, 947
RseI	CAYNNNNRTG	2 cut(s)	390, 611
SacI	GAGCTC	1 cut(s)	170
SatI	GCNGC	4 cut(s)	191, 488, 723, 976
Sau3AI	GATC	3 cut(s)	401, 744, 920
Sau96I	GGNCC	2 cut(s)	215, 769
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	2 cut(s)	170, 808
SfaNI	GCATC	1 cut(s)	452
SfcI	CTRYAG	2 cut(s)	230, 723
SinI	GGWCC	2 cut(s)	215, 769
SmiMI	CAYNNNNRTG	2 cut(s)	390, 611
SmlI	CTYRAG	5 cut(s)	35, 44, 60, 146, 893
SmoI	CTYRAG	5 cut(s)	35, 44, 60, 146, 893
Sse9I	AATT	2 cut(s)	24, 479
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	957
SstI	GAGCTC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	1 cut(s)	787
StyI	CCWWGG	2 cut(s)	606, 816
TaaI	ACNGT	3 cut(s)	78, 742, 838
TasI	AATT	2 cut(s)	24, 479
TatI	WGTACW	1 cut(s)	946
TfiI	GAWTC	1 cut(s)	654
TscAI	CASTG	2 cut(s)	747, 779
TseFI	GTSAC	3 cut(s)	434, 697, 736
TseI	GCWGC	4 cut(s)	190, 487, 722, 975
Tsp45I	GTSAC	3 cut(s)	434, 697, 736
TspDTI	ATGAA	5 cut(s)	392, 536, 585, 622, 955
TspRI	CASTG	2 cut(s)	747, 779
VpaK11BI	GGWCC	2 cut(s)	215, 769
XapI	RAATTY	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.