MD07G1160700.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
23493425 .. 23496630
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1160700.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGAGAGGCTAGTTCAAGGACCCATTAATCCCTGTCAGTCCTTTGGTGAGCATTTGGATTTTCAATTGGAGCAAAGTTTGAATTTCACCACTGAAAGCTTGAGATTTGAGGAGGAAGAAGAATCCCACCACCACCTCTTAATGCCAAGCTTGGAGGACAGAATGCCATTTCTCCAGATGCTACAAAGTGTTAATTCCTCCACCACCACCACTACACCTTATTTTCCATTGAAAGAGCCAAGCTTTCAAACACTTTTGAAACTCCAACACTTCAAAAAGCCATGGGAGTTGGACAAAACTTACATGCCTGAAATGGAAACCACAATTCAGAGAGCTCCAGAGCTTGAGAGCTGTGTGACGCATGAAATGGTTGAGCTGCAACATTCACCTGTGAAATCAGAAGGGAAAAACTTTCATCTCCAACACTCAATTTCTGAGTGCAACCAAGGGGAAGAAAAGCCCAGCTCAGCTGCTGGGTCTCCACCCCCACCTACCTGGGTTCAGGTACACAATGGTGCTGAGGAAACCCAGCAACCCAAATCTCCTCCTGCCACCAGGGAGAGGAGAAAGCGGAAGAGAACAAGGCCAACTAAGAACAAGGAAGAAGTGGAGAGCCAGCGGATGACCCACATTGCGGTGGAGCGCAACCGTCGCCGCCAGATGAATGACCATCTCAATGTCCTCAGGTCCCTCATGCCCACTTCCTACATTCAAAGGGGTGACCAAGCATCAATTGTGGGGGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGCTACTTCATTCCCTTGAAGCCCAAAAAGGAAATAGAAAAACAGCTGATCAAATTCAAGGGATGAACAATAATGGTAACAACAACAGCTCTTTCAGCTCCTCACCAGCATCCTCCTCTTCTCCCTGCAGCATGGCAATGCCATCCAATGGAATGTTCATGACTCTATCCCAGTGCAGAATTGGTTCTCATGATCAAGAAGGCACCACCGCCATCGTCACCGCCGCCACCGCCTTTGAGGATGAAGGCACTGCTCAGAAAAAGTCTGAGGCTGCAGACATAGATGTCACTGTGATCCAATCTCATGTCAACTTAAAAGTCCAGTGCCAAAGGAGAGCTGGGCAGCTGATGAAAGCCATCCTTGCATTTGAGGATCTTAGGCTAACTGTTTTGCACCTCAACATTACATCTTCACAAGACACTGTTCTTTACTCTTTCAATCTCAAGATAGAAGAAGGTTGTAATTTAGGATCAGCAGATGACATTGCAAGAGCCGTGCATCAGATATTCAGCTTCATCAATGGCAGCAGTTGA

Protein Analysis

435

Amino Acids

48.76

Weight (kDa)

5.96

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 206 - 257 1.3e-12 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 351 - 427 8.9e-10 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1055
AccB1I GGYRCC 1 cut(s) 974
AccB7I CCANNNNNTGG 1 cut(s) 920
AciI CCGC 8 cut(s) 571, 619, 635, 655, 981, 993, 996, 1002
AclWI GGATC 3 cut(s) 1060, 1152, 1249
AcsI RAATTY 2 cut(s) 82, 825
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 3 cut(s) 561, 634, 920
AjnI CCWGG 2 cut(s) 494, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AleI CACNNNNGTG 1 cut(s) 513
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 3 cut(s) 1060, 1152, 1249
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 7 cut(s) 376, 470, 772, 900, 1043, 1114, 1296
ApoI RAATTY 2 cut(s) 82, 825
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 955
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 20, 687
AsuHPI GGTGA 6 cut(s) 59, 79, 378, 731, 867, 982
AvaII GGWCC 2 cut(s) 20, 687
AxyI CCTNAGG 1 cut(s) 683
BanI GGYRCC 1 cut(s) 974
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 6 cut(s) 363, 457, 784, 912, 1030, 1126
BccI CCATC 4 cut(s) 678, 922, 992, 1136
BceAI ACGGC 1 cut(s) 1250
BciT130I CCWGG 2 cut(s) 496, 556
BclI TGATCA 2 cut(s) 820, 964
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 2 cut(s) 898, 1044
BisI GCNGC 9 cut(s) 377, 471, 655, 773, 901, 996, 1044, 1115, 1297
BlpI GCTNAGC 1 cut(s) 466
BlsI GCNGC 9 cut(s) 378, 472, 656, 774, 902, 997, 1045, 1116, 1298
Bme1390I CCNGG 2 cut(s) 496, 556
Bme18I GGWCC 2 cut(s) 20, 687
BmgT120I GGNCC 2 cut(s) 20, 687
BmiI GGNNCC 3 cut(s) 22, 689, 976
BmrFI CCNGG 2 cut(s) 496, 556
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 4 cut(s) 168, 737, 890, 1279
BmuI ACTGGG 1 cut(s) 937
BpmI CTGGAG 2 cut(s) 158, 321
Bpu10I CCTNAGC 1 cut(s) 519
Bpu1102I GCTNAGC 1 cut(s) 466
BpuEI CTTGAG 3 cut(s) 121, 365, 1199
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 281, 445, 495, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 561, 634, 920
Bse1I ACTGG 2 cut(s) 943, 1093
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 3 cut(s) 630, 915, 1254
BseBI CCWGG 2 cut(s) 496, 556
BseDI CCNNGG 4 cut(s) 281, 445, 495, 555
BseGI GGATG 6 cut(s) 627, 840, 881, 914, 1018, 1128
BseLI CCNNNNNNNGG 3 cut(s) 561, 634, 920
BseMI GCAATG 3 cut(s) 630, 915, 1254
BseMII CTCAG 6 cut(s) 426, 480, 510, 697, 1029, 1040
BseNI ACTGG 2 cut(s) 943, 1093
BseRI GAGGAG 5 cut(s) 125, 534, 577, 862, 877
BseXI GCAGC 6 cut(s) 363, 457, 784, 912, 1030, 1126
BseYI CCCAGC 4 cut(s) 461, 473, 528, 1109
BsgI GTGCAG 1 cut(s) 967
BshFI GGCC 1 cut(s) 586
BshNI GGYRCC 1 cut(s) 974
BsiHKAI GWGCWC 1 cut(s) 337
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 561, 634, 920
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 1 cut(s) 586
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 820, 964, 1065, 1144, 1241
Bsp1720I GCTNAGC 1 cut(s) 466
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 8 cut(s) 571, 619, 635, 655, 981, 993, 996, 1002
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 6 cut(s) 427, 479, 511, 696, 1030, 1039
BspHI TCATGA 2 cut(s) 930, 961
BspLI GGNNCC 3 cut(s) 22, 689, 976
BspMAI CTGCAG 2 cut(s) 902, 1048
BspPI GGATC 3 cut(s) 1060, 1152, 1249
BspT107I GGYRCC 1 cut(s) 974
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 3 cut(s) 630, 915, 1254
BsrI ACTGG 2 cut(s) 943, 1093
BssECI CCNNGG 4 cut(s) 281, 445, 495, 555
BssMI GATC 5 cut(s) 820, 964, 1065, 1144, 1241
BssT1I CCWWGG 2 cut(s) 281, 445
Bst2UI CCWGG 2 cut(s) 496, 556
Bst4CI ACNGT 4 cut(s) 650, 1063, 1159, 1195
Bst6I CTCTTC 2 cut(s) 569, 895
BstC8I GCNNGC 1 cut(s) 617
BstDEI CTNAG 8 cut(s) 435, 466, 519, 591, 683, 1026, 1038, 1148
BstDSI CCRYGG 1 cut(s) 281
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 6 cut(s) 627, 840, 881, 914, 1018, 1128
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 5 cut(s) 823, 967, 1068, 1147, 1244
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 5 cut(s) 820, 964, 1065, 1144, 1241
BstMWI GCNNNNNNNGC 4 cut(s) 651, 867, 1001, 1133
BstNI CCWGG 2 cut(s) 496, 556
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 494, 554
BstSFI CTRYAG 2 cut(s) 898, 1044
BstV1I GCAGC 6 cut(s) 363, 457, 784, 912, 1030, 1126
BstX2I RGATCY 1 cut(s) 1144
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 1 cut(s) 1144
Bsu36I CCTNAGG 1 cut(s) 683
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 6 cut(s) 627, 840, 881, 914, 1018, 1128
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 6 cut(s) 90, 950, 1020, 1059, 1100, 1191
Cac8I GCNNGC 1 cut(s) 617
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 2 cut(s) 930, 961
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 20, 687
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 506
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 8 cut(s) 282, 304, 362, 694, 904, 931, 962, 1076
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 8 cut(s) 435, 466, 519, 591, 683, 1026, 1038, 1148
DpnI GATC 5 cut(s) 822, 966, 1067, 1146, 1243
DpnII GATC 5 cut(s) 820, 964, 1065, 1144, 1241
DrdI GACNNNNNNGTC 1 cut(s) 1055
DseDI GACNNNNNNGTC 1 cut(s) 1055
Eam1104I CTCTTC 2 cut(s) 569, 895
EarI CTCTTC 2 cut(s) 569, 895
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 281, 445
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 20, 687
Eco53kI GAGCTC 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 683
Eco91I GGTNACC 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 335
EcoO109I RGGNCCY 2 cut(s) 20, 687
EcoO65I GGTNACC 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 494, 554
EcoT14I CCWWGG 2 cut(s) 281, 445
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 281, 445
FaeI CATG 8 cut(s) 285, 307, 365, 697, 907, 934, 965, 1079
FaiI YATR 9 cut(s) 283, 305, 363, 695, 905, 932, 963, 1052, 1077
FalI AAGNNNNNCTT 2 cut(s) 1116, 1148
FaqI GGGAC 1 cut(s) 673
FatI CATG 8 cut(s) 281, 303, 361, 693, 903, 930, 961, 1075
FbaI TGATCA 2 cut(s) 820, 964
Fnu4HI GCNGC 9 cut(s) 377, 471, 655, 773, 901, 996, 1044, 1115, 1297
FokI GGATG 6 cut(s) 634, 847, 868, 901, 1025, 1115
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 9 cut(s) 377, 471, 655, 773, 901, 996, 1044, 1115, 1297
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 644
GluI GCNGC 9 cut(s) 377, 471, 655, 773, 901, 996, 1044, 1115, 1297
GsaI CCCAGC 4 cut(s) 465, 477, 532, 1113
GsuI CTGGAG 2 cut(s) 158, 321
HaeIII GGCC 1 cut(s) 586
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 645
Hin1II CATG 8 cut(s) 285, 307, 365, 697, 907, 934, 965, 1079
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 3 cut(s) 97, 148, 241
HinfI GANTC 2 cut(s) 122, 934
HphI GGTGA 6 cut(s) 59, 79, 378, 731, 867, 982
Hpy166II GTNNAC 2 cut(s) 508, 1081
Hpy188I TCNGA 6 cut(s) 330, 400, 436, 1029, 1039, 1275
Hpy188III TCNNGA 6 cut(s) 175, 338, 931, 962, 968, 1216
Hpy8I GTNNAC 2 cut(s) 508, 1081
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 5 cut(s) 395, 754, 965, 1010, 1220
HpyCH4III ACNGT 4 cut(s) 650, 1063, 1159, 1195
HpyF10VI GCNNNNNNNGC 4 cut(s) 651, 867, 1001, 1133
HpyF3I CTNAG 8 cut(s) 435, 466, 519, 591, 683, 1026, 1038, 1148
Hsp92II CATG 8 cut(s) 285, 307, 365, 697, 907, 934, 965, 1079
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 2 cut(s) 820, 964
Kzo9I GATC 5 cut(s) 820, 964, 1065, 1144, 1241
LmnI GCTCC 5 cut(s) 70, 340, 640, 769, 875
Lsp1109I GCAGC 6 cut(s) 363, 457, 784, 912, 1030, 1126
LweI GCATC 4 cut(s) 168, 737, 890, 1279
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 5 cut(s) 355, 719, 848, 988, 1057
MalI GATC 5 cut(s) 822, 966, 1067, 1146, 1243
MboI GATC 5 cut(s) 820, 964, 1065, 1144, 1241
MboII GAAGA 8 cut(s) 128, 131, 464, 586, 614, 882, 1173, 1235
MfeI CAATTG 2 cut(s) 65, 732
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 1 cut(s) 337
MlyI GAGTC 1 cut(s) 928
MmeI TCCRAC 3 cut(s) 270, 289, 445
MroXI GAANNNNTTC 1 cut(s) 955
MseI TTAA 4 cut(s) 27, 140, 192, 1085
MslI CAYNNNNRTG 4 cut(s) 513, 635, 675, 908
MspA1I CMGCKG 4 cut(s) 470, 619, 818, 1117
MspR9I CCNGG 2 cut(s) 496, 556
MunI CAATTG 2 cut(s) 65, 732
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 2 cut(s) 496, 556
MwoI GCNNNNNNNGC 4 cut(s) 651, 867, 1001, 1133
NcoI CCATGG 1 cut(s) 281
NdeII GATC 5 cut(s) 820, 964, 1065, 1144, 1241
NlaIII CATG 8 cut(s) 285, 307, 365, 697, 907, 934, 965, 1079
NlaIV GGNNCC 3 cut(s) 22, 689, 976
NmuCI GTSAC 4 cut(s) 355, 719, 988, 1057
NspI RCATGY 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 513
PagI TCATGA 2 cut(s) 930, 961
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 9 cut(s) 378, 472, 656, 774, 902, 997, 1045, 1116, 1298
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PpuMI RGGWCCY 2 cut(s) 20, 687
PshBI ATTAAT 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 337
Psp5II RGGWCCY 2 cut(s) 20, 687
Psp6I CCWGG 2 cut(s) 494, 554
PspEI GGTNACC 1 cut(s) 719
PspFI CCCAGC 4 cut(s) 461, 473, 528, 1109
PspGI CCWGG 2 cut(s) 494, 554
PspN4I GGNNCC 3 cut(s) 22, 689, 976
PspPI GGNCC 2 cut(s) 20, 687
PspPPI RGGWCCY 2 cut(s) 20, 687
PstI CTGCAG 2 cut(s) 902, 1048
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 3 cut(s) 470, 818, 1117
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 4 cut(s) 513, 635, 675, 908
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 4 cut(s) 27, 140, 192, 1085
SatI GCNGC 9 cut(s) 377, 471, 655, 773, 901, 996, 1044, 1115, 1297
Sau3AI GATC 5 cut(s) 820, 964, 1065, 1144, 1241
Sau96I GGNCC 2 cut(s) 20, 687
SchI GAGTC 1 cut(s) 928
ScrFI CCNGG 2 cut(s) 496, 556
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 4 cut(s) 168, 737, 890, 1279
SfcI CTRYAG 2 cut(s) 898, 1044
SinI GGWCC 2 cut(s) 20, 687
SmiMI CAYNNNNRTG 4 cut(s) 513, 635, 675, 908
SmlI CTYRAG 3 cut(s) 100, 344, 1214
SmoI CTYRAG 3 cut(s) 100, 344, 1214
SsiI CCGC 8 cut(s) 571, 619, 635, 655, 981, 993, 996, 1002
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 494, 554
StyI CCWWGG 2 cut(s) 281, 445
TaaI ACNGT 4 cut(s) 650, 1063, 1159, 1195
TauI GCSGC 2 cut(s) 657, 998
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 4 cut(s) 27, 140, 192, 1085
Tru9I TTAA 4 cut(s) 27, 140, 192, 1085
TscAI CASTG 6 cut(s) 97, 950, 1027, 1066, 1100, 1198
TseFI GTSAC 4 cut(s) 355, 719, 988, 1057
TseI GCWGC 7 cut(s) 376, 470, 772, 900, 1043, 1114, 1296
Tsp45I GTSAC 4 cut(s) 355, 719, 988, 1057
TspDTI ATGAA 9 cut(s) 378, 404, 677, 770, 851, 919, 1029, 1136, 1276
TspRI CASTG 6 cut(s) 97, 950, 1027, 1066, 1100, 1198
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 2 cut(s) 20, 687
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 2 cut(s) 82, 825
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 2 cut(s) 950, 1106
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.