transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460 |
| fragaria_vesca | FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790 |
| malus_domestica | MD01G1089300.v1.1 MD07G1160700.v1.1 |
| prunus_persica | Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1 |
| pyrus_communis | pycom01g11350 pycom07g15680 |
| rosa_chinensis | RchiOBHm_Chr1g0361191 |
| rosa_laevigata | RLG00000027740 |
| rosa_multiflora | Rmu_sc0007111.1_g000017 |
| rosa_roxburghii | Rroxscaffold_4G00295280 |
| rosa_rugosa | Rorug01G0287400.1 |
| rosa_samantha | Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400 |
| rosa_wichuraiana | Rw1G026370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1055 |
| AccB1I | GGYRCC | 1 cut(s) | 974 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 920 |
| AciI | CCGC | 8 cut(s) | 571, 619, 635, 655, 981, 993, 996, 1002 |
| AclWI | GGATC | 3 cut(s) | 1060, 1152, 1249 |
| AcsI | RAATTY | 2 cut(s) | 82, 825 |
| AfaI | GTAC | 1 cut(s) | 507 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 561, 634, 920 |
| AjnI | CCWGG | 2 cut(s) | 494, 554 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 911, 943 |
| AleI | CACNNNNGTG | 1 cut(s) | 513 |
| Alw21I | GWGCWC | 1 cut(s) | 337 |
| Alw26I | GTCTC | 1 cut(s) | 483 |
| AlwI | GGATC | 3 cut(s) | 1060, 1152, 1249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 473 |
| AoxI | GGCC | 1 cut(s) | 584 |
| ApeKI | GCWGC | 7 cut(s) | 376, 470, 772, 900, 1043, 1114, 1296 |
| ApoI | RAATTY | 2 cut(s) | 82, 825 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 955 |
| AspLEI | GCGC | 1 cut(s) | 645 |
| AspS9I | GGNCC | 2 cut(s) | 20, 687 |
| AsuHPI | GGTGA | 6 cut(s) | 59, 79, 378, 731, 867, 982 |
| AvaII | GGWCC | 2 cut(s) | 20, 687 |
| AxyI | CCTNAGG | 1 cut(s) | 683 |
| BanI | GGYRCC | 1 cut(s) | 974 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| Bbv12I | GWGCWC | 1 cut(s) | 337 |
| BbvCI | CCTCAGC | 1 cut(s) | 519 |
| BbvI | GCAGC | 6 cut(s) | 363, 457, 784, 912, 1030, 1126 |
| BccI | CCATC | 4 cut(s) | 678, 922, 992, 1136 |
| BceAI | ACGGC | 1 cut(s) | 1250 |
| BciT130I | CCWGG | 2 cut(s) | 496, 556 |
| BclI | TGATCA | 2 cut(s) | 820, 964 |
| BcoDI | GTCTC | 1 cut(s) | 483 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BfmI | CTRYAG | 2 cut(s) | 898, 1044 |
| BisI | GCNGC | 9 cut(s) | 377, 471, 655, 773, 901, 996, 1044, 1115, 1297 |
| BlpI | GCTNAGC | 1 cut(s) | 466 |
| BlsI | GCNGC | 9 cut(s) | 378, 472, 656, 774, 902, 997, 1045, 1116, 1298 |
| Bme1390I | CCNGG | 2 cut(s) | 496, 556 |
| Bme18I | GGWCC | 2 cut(s) | 20, 687 |
| BmgT120I | GGNCC | 2 cut(s) | 20, 687 |
| BmiI | GGNNCC | 3 cut(s) | 22, 689, 976 |
| BmrFI | CCNGG | 2 cut(s) | 496, 556 |
| BmrI | ACTGGG | 1 cut(s) | 937 |
| BmsI | GCATC | 4 cut(s) | 168, 737, 890, 1279 |
| BmuI | ACTGGG | 1 cut(s) | 937 |
| BpmI | CTGGAG | 2 cut(s) | 158, 321 |
| Bpu10I | CCTNAGC | 1 cut(s) | 519 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 466 |
| BpuEI | CTTGAG | 3 cut(s) | 121, 365, 1199 |
| BsaI | GGTCTC | 1 cut(s) | 483 |
| BsaJI | CCNNGG | 4 cut(s) | 281, 445, 495, 555 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 561, 634, 920 |
| Bse1I | ACTGG | 2 cut(s) | 943, 1093 |
| Bse21I | CCTNAGG | 1 cut(s) | 683 |
| Bse3DI | GCAATG | 3 cut(s) | 630, 915, 1254 |
| BseBI | CCWGG | 2 cut(s) | 496, 556 |
| BseDI | CCNNGG | 4 cut(s) | 281, 445, 495, 555 |
| BseGI | GGATG | 6 cut(s) | 627, 840, 881, 914, 1018, 1128 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 561, 634, 920 |
| BseMI | GCAATG | 3 cut(s) | 630, 915, 1254 |
| BseMII | CTCAG | 6 cut(s) | 426, 480, 510, 697, 1029, 1040 |
| BseNI | ACTGG | 2 cut(s) | 943, 1093 |
| BseRI | GAGGAG | 5 cut(s) | 125, 534, 577, 862, 877 |
| BseXI | GCAGC | 6 cut(s) | 363, 457, 784, 912, 1030, 1126 |
| BseYI | CCCAGC | 4 cut(s) | 461, 473, 528, 1109 |
| BsgI | GTGCAG | 1 cut(s) | 967 |
| BshFI | GGCC | 1 cut(s) | 586 |
| BshNI | GGYRCC | 1 cut(s) | 974 |
| BsiHKAI | GWGCWC | 1 cut(s) | 337 |
| BslFI | GGGAC | 1 cut(s) | 673 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 561, 634, 920 |
| BsmAI | GTCTC | 1 cut(s) | 483 |
| BsmFI | GGGAC | 1 cut(s) | 673 |
| BsmI | GAATGC | 1 cut(s) | 168 |
| BsnI | GGCC | 1 cut(s) | 586 |
| Bso31I | GGTCTC | 1 cut(s) | 483 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp143I | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 466 |
| Bsp19I | CCATGG | 1 cut(s) | 281 |
| BspACI | CCGC | 8 cut(s) | 571, 619, 635, 655, 981, 993, 996, 1002 |
| BspANI | GGCC | 1 cut(s) | 586 |
| BspCNI | CTCAG | 6 cut(s) | 427, 479, 511, 696, 1030, 1039 |
| BspHI | TCATGA | 2 cut(s) | 930, 961 |
| BspLI | GGNNCC | 3 cut(s) | 22, 689, 976 |
| BspMAI | CTGCAG | 2 cut(s) | 902, 1048 |
| BspPI | GGATC | 3 cut(s) | 1060, 1152, 1249 |
| BspT107I | GGYRCC | 1 cut(s) | 974 |
| BspTNI | GGTCTC | 1 cut(s) | 483 |
| BsrDI | GCAATG | 3 cut(s) | 630, 915, 1254 |
| BsrI | ACTGG | 2 cut(s) | 943, 1093 |
| BssECI | CCNNGG | 4 cut(s) | 281, 445, 495, 555 |
| BssMI | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| BssT1I | CCWWGG | 2 cut(s) | 281, 445 |
| Bst2UI | CCWGG | 2 cut(s) | 496, 556 |
| Bst4CI | ACNGT | 4 cut(s) | 650, 1063, 1159, 1195 |
| Bst6I | CTCTTC | 2 cut(s) | 569, 895 |
| BstC8I | GCNNGC | 1 cut(s) | 617 |
| BstDEI | CTNAG | 8 cut(s) | 435, 466, 519, 591, 683, 1026, 1038, 1148 |
| BstDSI | CCRYGG | 1 cut(s) | 281 |
| BstEII | GGTNACC | 1 cut(s) | 719 |
| BstF5I | GGATG | 6 cut(s) | 627, 840, 881, 914, 1018, 1128 |
| BstHHI | GCGC | 1 cut(s) | 645 |
| BstKTI | GATC | 5 cut(s) | 823, 967, 1068, 1147, 1244 |
| BstMAI | GTCTC | 1 cut(s) | 483 |
| BstMBI | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 651, 867, 1001, 1133 |
| BstNI | CCWGG | 2 cut(s) | 496, 556 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstPI | GGTNACC | 1 cut(s) | 719 |
| BstSCI | CCNGG | 2 cut(s) | 494, 554 |
| BstSFI | CTRYAG | 2 cut(s) | 898, 1044 |
| BstV1I | GCAGC | 6 cut(s) | 363, 457, 784, 912, 1030, 1126 |
| BstX2I | RGATCY | 1 cut(s) | 1144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 495 |
| BstYI | RGATCY | 1 cut(s) | 1144 |
| Bsu36I | CCTNAGG | 1 cut(s) | 683 |
| BsuRI | GGCC | 1 cut(s) | 586 |
| BtgI | CCRYGG | 1 cut(s) | 281 |
| BtsCI | GGATG | 6 cut(s) | 627, 840, 881, 914, 1018, 1128 |
| BtsI | GCAGTG | 1 cut(s) | 1020 |
| BtsIMutI | CAGTG | 6 cut(s) | 90, 950, 1020, 1059, 1100, 1191 |
| Cac8I | GCNNGC | 1 cut(s) | 617 |
| CaiI | CAGNNNCTG | 1 cut(s) | 473 |
| CciI | TCATGA | 2 cut(s) | 930, 961 |
| CfoI | GCGC | 1 cut(s) | 645 |
| Cfr13I | GGNCC | 2 cut(s) | 20, 687 |
| CseI | GACGC | 1 cut(s) | 367 |
| Csp6I | GTAC | 1 cut(s) | 506 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 988, 1023 |
| CviAII | CATG | 8 cut(s) | 282, 304, 362, 694, 904, 931, 962, 1076 |
| CviQI | GTAC | 1 cut(s) | 506 |
| DdeI | CTNAG | 8 cut(s) | 435, 466, 519, 591, 683, 1026, 1038, 1148 |
| DpnI | GATC | 5 cut(s) | 822, 966, 1067, 1146, 1243 |
| DpnII | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1055 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1055 |
| Eam1104I | CTCTTC | 2 cut(s) | 569, 895 |
| EarI | CTCTTC | 2 cut(s) | 569, 895 |
| Ecl136II | GAGCTC | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 2 cut(s) | 281, 445 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco31I | GGTCTC | 1 cut(s) | 483 |
| Eco47I | GGWCC | 2 cut(s) | 20, 687 |
| Eco53kI | GAGCTC | 1 cut(s) | 335 |
| Eco81I | CCTNAGG | 1 cut(s) | 683 |
| Eco91I | GGTNACC | 1 cut(s) | 719 |
| EcoICRI | GAGCTC | 1 cut(s) | 335 |
| EcoO109I | RGGNCCY | 2 cut(s) | 20, 687 |
| EcoO65I | GGTNACC | 1 cut(s) | 719 |
| EcoRII | CCWGG | 2 cut(s) | 494, 554 |
| EcoT14I | CCWWGG | 2 cut(s) | 281, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| ErhI | CCWWGG | 2 cut(s) | 281, 445 |
| FaeI | CATG | 8 cut(s) | 285, 307, 365, 697, 907, 934, 965, 1079 |
| FaiI | YATR | 9 cut(s) | 283, 305, 363, 695, 905, 932, 963, 1052, 1077 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1116, 1148 |
| FaqI | GGGAC | 1 cut(s) | 673 |
| FatI | CATG | 8 cut(s) | 281, 303, 361, 693, 903, 930, 961, 1075 |
| FbaI | TGATCA | 2 cut(s) | 820, 964 |
| Fnu4HI | GCNGC | 9 cut(s) | 377, 471, 655, 773, 901, 996, 1044, 1115, 1297 |
| FokI | GGATG | 6 cut(s) | 634, 847, 868, 901, 1025, 1115 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| Fsp4HI | GCNGC | 9 cut(s) | 377, 471, 655, 773, 901, 996, 1044, 1115, 1297 |
| FspBI | CTAG | 1 cut(s) | 11 |
| GlaI | GCGC | 1 cut(s) | 644 |
| GluI | GCNGC | 9 cut(s) | 377, 471, 655, 773, 901, 996, 1044, 1115, 1297 |
| GsaI | CCCAGC | 4 cut(s) | 465, 477, 532, 1113 |
| GsuI | CTGGAG | 2 cut(s) | 158, 321 |
| HaeIII | GGCC | 1 cut(s) | 586 |
| HgaI | GACGC | 1 cut(s) | 367 |
| HhaI | GCGC | 1 cut(s) | 645 |
| Hin1II | CATG | 8 cut(s) | 285, 307, 365, 697, 907, 934, 965, 1079 |
| Hin6I | GCGC | 1 cut(s) | 643 |
| HinP1I | GCGC | 1 cut(s) | 643 |
| HincII | GTYRAC | 1 cut(s) | 1081 |
| HindII | GTYRAC | 1 cut(s) | 1081 |
| HindIII | AAGCTT | 3 cut(s) | 97, 148, 241 |
| HinfI | GANTC | 2 cut(s) | 122, 934 |
| HphI | GGTGA | 6 cut(s) | 59, 79, 378, 731, 867, 982 |
| Hpy166II | GTNNAC | 2 cut(s) | 508, 1081 |
| Hpy188I | TCNGA | 6 cut(s) | 330, 400, 436, 1029, 1039, 1275 |
| Hpy188III | TCNNGA | 6 cut(s) | 175, 338, 931, 962, 968, 1216 |
| Hpy8I | GTNNAC | 2 cut(s) | 508, 1081 |
| Hpy99I | CGWCG | 1 cut(s) | 654 |
| HpyAV | CCTTC | 5 cut(s) | 395, 754, 965, 1010, 1220 |
| HpyCH4III | ACNGT | 4 cut(s) | 650, 1063, 1159, 1195 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 651, 867, 1001, 1133 |
| HpyF3I | CTNAG | 8 cut(s) | 435, 466, 519, 591, 683, 1026, 1038, 1148 |
| Hsp92II | CATG | 8 cut(s) | 285, 307, 365, 697, 907, 934, 965, 1079 |
| HspAI | GCGC | 1 cut(s) | 643 |
| Ksp22I | TGATCA | 2 cut(s) | 820, 964 |
| Kzo9I | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| LmnI | GCTCC | 5 cut(s) | 70, 340, 640, 769, 875 |
| Lsp1109I | GCAGC | 6 cut(s) | 363, 457, 784, 912, 1030, 1126 |
| LweI | GCATC | 4 cut(s) | 168, 737, 890, 1279 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MaeIII | GTNAC | 5 cut(s) | 355, 719, 848, 988, 1057 |
| MalI | GATC | 5 cut(s) | 822, 966, 1067, 1146, 1243 |
| MboI | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| MboII | GAAGA | 8 cut(s) | 128, 131, 464, 586, 614, 882, 1173, 1235 |
| MfeI | CAATTG | 2 cut(s) | 65, 732 |
| MflI | RGATCY | 1 cut(s) | 1144 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MlyI | GAGTC | 1 cut(s) | 928 |
| MmeI | TCCRAC | 3 cut(s) | 270, 289, 445 |
| MroXI | GAANNNNTTC | 1 cut(s) | 955 |
| MseI | TTAA | 4 cut(s) | 27, 140, 192, 1085 |
| MslI | CAYNNNNRTG | 4 cut(s) | 513, 635, 675, 908 |
| MspA1I | CMGCKG | 4 cut(s) | 470, 619, 818, 1117 |
| MspR9I | CCNGG | 2 cut(s) | 496, 556 |
| MunI | CAATTG | 2 cut(s) | 65, 732 |
| Mva1269I | GAATGC | 1 cut(s) | 168 |
| MvaI | CCWGG | 2 cut(s) | 496, 556 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 651, 867, 1001, 1133 |
| NcoI | CCATGG | 1 cut(s) | 281 |
| NdeII | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| NlaIII | CATG | 8 cut(s) | 285, 307, 365, 697, 907, 934, 965, 1079 |
| NlaIV | GGNNCC | 3 cut(s) | 22, 689, 976 |
| NmuCI | GTSAC | 4 cut(s) | 355, 719, 988, 1057 |
| NspI | RCATGY | 1 cut(s) | 307 |
| OliI | CACNNNNGTG | 1 cut(s) | 513 |
| PagI | TCATGA | 2 cut(s) | 930, 961 |
| PctI | GAATGC | 1 cut(s) | 168 |
| PdmI | GAANNNNTTC | 1 cut(s) | 955 |
| PfeI | GAWTC | 1 cut(s) | 122 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 920 |
| PkrI | GCNGC | 9 cut(s) | 378, 472, 656, 774, 902, 997, 1045, 1116, 1298 |
| PleI | GAGTC | 1 cut(s) | 928 |
| PpsI | GAGTC | 1 cut(s) | 928 |
| PpuMI | RGGWCCY | 2 cut(s) | 20, 687 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| Psp124BI | GAGCTC | 1 cut(s) | 337 |
| Psp5II | RGGWCCY | 2 cut(s) | 20, 687 |
| Psp6I | CCWGG | 2 cut(s) | 494, 554 |
| PspEI | GGTNACC | 1 cut(s) | 719 |
| PspFI | CCCAGC | 4 cut(s) | 461, 473, 528, 1109 |
| PspGI | CCWGG | 2 cut(s) | 494, 554 |
| PspN4I | GGNNCC | 3 cut(s) | 22, 689, 976 |
| PspPI | GGNCC | 2 cut(s) | 20, 687 |
| PspPPI | RGGWCCY | 2 cut(s) | 20, 687 |
| PstI | CTGCAG | 2 cut(s) | 902, 1048 |
| PstNI | CAGNNNCTG | 1 cut(s) | 473 |
| PsuI | RGATCY | 1 cut(s) | 1144 |
| PvuII | CAGCTG | 3 cut(s) | 470, 818, 1117 |
| RsaI | GTAC | 1 cut(s) | 507 |
| RsaNI | GTAC | 1 cut(s) | 506 |
| RseI | CAYNNNNRTG | 4 cut(s) | 513, 635, 675, 908 |
| SacI | GAGCTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 4 cut(s) | 27, 140, 192, 1085 |
| SatI | GCNGC | 9 cut(s) | 377, 471, 655, 773, 901, 996, 1044, 1115, 1297 |
| Sau3AI | GATC | 5 cut(s) | 820, 964, 1065, 1144, 1241 |
| Sau96I | GGNCC | 2 cut(s) | 20, 687 |
| SchI | GAGTC | 1 cut(s) | 928 |
| ScrFI | CCNGG | 2 cut(s) | 496, 556 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SfaNI | GCATC | 4 cut(s) | 168, 737, 890, 1279 |
| SfcI | CTRYAG | 2 cut(s) | 898, 1044 |
| SinI | GGWCC | 2 cut(s) | 20, 687 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 513, 635, 675, 908 |
| SmlI | CTYRAG | 3 cut(s) | 100, 344, 1214 |
| SmoI | CTYRAG | 3 cut(s) | 100, 344, 1214 |
| SsiI | CCGC | 8 cut(s) | 571, 619, 635, 655, 981, 993, 996, 1002 |
| SspMI | CTAG | 1 cut(s) | 11 |
| SstI | GAGCTC | 1 cut(s) | 337 |
| StyD4I | CCNGG | 2 cut(s) | 494, 554 |
| StyI | CCWWGG | 2 cut(s) | 281, 445 |
| TaaI | ACNGT | 4 cut(s) | 650, 1063, 1159, 1195 |
| TauI | GCSGC | 2 cut(s) | 657, 998 |
| TfiI | GAWTC | 1 cut(s) | 122 |
| Tru1I | TTAA | 4 cut(s) | 27, 140, 192, 1085 |
| Tru9I | TTAA | 4 cut(s) | 27, 140, 192, 1085 |
| TscAI | CASTG | 6 cut(s) | 97, 950, 1027, 1066, 1100, 1198 |
| TseFI | GTSAC | 4 cut(s) | 355, 719, 988, 1057 |
| TseI | GCWGC | 7 cut(s) | 376, 470, 772, 900, 1043, 1114, 1296 |
| Tsp45I | GTSAC | 4 cut(s) | 355, 719, 988, 1057 |
| TspDTI | ATGAA | 9 cut(s) | 378, 404, 677, 770, 851, 919, 1029, 1136, 1276 |
| TspRI | CASTG | 6 cut(s) | 97, 950, 1027, 1066, 1100, 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 920 |
| VpaK11BI | GGWCC | 2 cut(s) | 20, 687 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XapI | RAATTY | 2 cut(s) | 82, 825 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 950, 1106 |
| XmnI | GAANNNNTTC | 1 cut(s) | 955 |
| XspI | CTAG | 1 cut(s) | 11 |