Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

11874128 .. 11878085

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCATTTCTTCAGATGCTACAAAGCATTGATTTCCCTCCTAATTTCACTCCAAAAGAGCCAAGCTTTCAACCGTTGTTGAGACATCACCTCAACAACACCACTACAACAGCATGGCCGAAAATGGAAAGTACCAAAAATGCCCAAATTCACACACTTGGGGAACTTGAAAGCTGTGTAACTCAAGACAATCAACAACAGTTGTATTCACCAGCAAATTCTGAAGGACAAGACCCTCACCAAAACAACCCACTTTCTGGTACTGTTGAGGTTGGTGGTGGTGGTGGTGGTGTTGTGAGCTCAGATTGCAACCAAAAACTGCAACAACTCAACTCAGCAAAAATGAGTCCTATCCAGACACAGACCCACTTAACCAAAACCGCTTCTTCTCCGGCCACCCGAGAGAGACAAAAGCGTAAGAGAACAAGACCAACCAAGAACAAAGAGGAGGTAGAGAGCCAGAGAATGACCCACATTGCTGTTGAGCGCAACCGCAGATGCCAAATGAATGATCATCTCAATGTTCTCAGATCCCTCATGCCGCCTTCCTACATCCAAAGGGGTGACCAAGCTTCCATCGTTGGGGGAGCAATAGACTTTGTGAAGGAGTTGGAGCAGCACCTTCAGTCCCTTGAAGCACAAAAGAGAACGAGAAGAGCTGAAGGCTTTACCAACACCAATGTTGACCCTAACAATAACAACTCCATGACCTCATCTTCACCATCTTCATCATCAACCATGACAATGCCTTCAAATGGGATGTTCATGTCTCTCTCCCAATGCAGAATTGGGTCTACTGAGGAAGGAAACACTTGTGGGGATGATGGAGTCACCGCACAAAACAAGTCTGAGGCTGCAGAAGTAGATGTCACAGTGATCCAAACTCATGTGAACTTGAAGGTCCAGTGTCAAAAGAGGCCTGGCCAGTTGGTGAGAGCCCTTGTTGCAATTGAAGATATCAGGCTAACAGTTTTGCACCTCAACATTACTTCTTCAGAAGACGAGGTGCTTTACTCTTTCAATCTCAAGATTGAGGAGGGATGTAAGTTAGGATCAGCAGATGATATTGCTAGAGCAGTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

362

Amino Acids

39.89

Weight (kDa)

6.6

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	154 - 205	2.1e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	287 - 361	6.1e-08	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	794
AciI	CCGC	4 cut(s)	381, 493, 542, 834
AclWI	GGATC	3 cut(s)	525, 871, 1060
AcoI	YGGCCR	3 cut(s)	116, 393, 922
AcsI	RAATTY	2 cut(s)	147, 217
AcuI	CTGAAG	4 cut(s)	243, 608, 681, 978
AfaI	GTAC	3 cut(s)	133, 262, 1080
AfiI	CCNNNNNNNGG	3 cut(s)	257, 582, 755
AgsI	TTSAA	7 cut(s)	71, 170, 635, 753, 898, 953, 1021
AjnI	CCWGG	1 cut(s)	919
AluBI	AGCT	5 cut(s)	66, 174, 300, 572, 659
AluI	AGCT	5 cut(s)	66, 174, 300, 572, 659
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	3 cut(s)	76, 400, 774
AlwI	GGATC	3 cut(s)	525, 871, 1060
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	4 cut(s)	116, 393, 917, 922
ApeKI	GCWGC	2 cut(s)	616, 854
ApoI	RAATTY	2 cut(s)	147, 217
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	901
AsuHPI	GGTGA	7 cut(s)	80, 201, 230, 575, 711, 823, 943
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	901
BalI	TGGCCA	1 cut(s)	924
BanII	GRGCYC	2 cut(s)	302, 940
BbsI	GAAGAC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	628, 841
BccI	CCATC	3 cut(s)	584, 730, 818
BciT130I	CCWGG	1 cut(s)	921
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	76, 400, 774
BfaI	CTAG	1 cut(s)	1071
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	3 cut(s)	542, 617, 855
BlsI	GCNGC	3 cut(s)	543, 618, 856
Bme1390I	CCNGG	1 cut(s)	921
Bme18I	GGWCC	1 cut(s)	901
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	901
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	6, 488
BpiI	GAAGAC	1 cut(s)	1005
BpuEI	CTTGAG	2 cut(s)	168, 1010
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 582, 755
Bse1I	ACTGG	2 cut(s)	904, 925
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	921
BseGI	GGATG	4 cut(s)	552, 765, 826, 1046
BseLI	CCNNNNNNNGG	3 cut(s)	257, 582, 755
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	5 cut(s)	315, 348, 541, 789, 840
BseNI	ACTGG	2 cut(s)	904, 925
BseRI	GAGGAG	2 cut(s)	461, 1049
BseXI	GCAGC	2 cut(s)	628, 841
BshFI	GGCC	4 cut(s)	118, 395, 919, 924
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	257, 582, 755
BsmAI	GTCTC	3 cut(s)	76, 400, 774
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	4 cut(s)	118, 395, 919, 924
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	302, 940
Bsp143I	GATC	4 cut(s)	511, 530, 876, 1052
BspACI	CCGC	4 cut(s)	381, 493, 542, 834
BspANI	GGCC	4 cut(s)	118, 395, 919, 924
BspCNI	CTCAG	5 cut(s)	314, 347, 540, 790, 841
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	3 cut(s)	525, 871, 1060
BspQI	GCTCTTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	904, 925
BssMI	GATC	4 cut(s)	511, 530, 876, 1052
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	5 cut(s)	75, 201, 265, 874, 970
Bst6I	CTCTTC	1 cut(s)	649
BstDEI	CTNAG	5 cut(s)	301, 334, 527, 798, 849
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	4 cut(s)	552, 765, 826, 1046
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	4 cut(s)	514, 533, 879, 1055
BstMAI	GTCTC	3 cut(s)	76, 400, 774
BstMBI	GATC	4 cut(s)	511, 530, 876, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 944
BstNI	CCWGG	1 cut(s)	921
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	919
BstSFI	CTRYAG	1 cut(s)	855
BstV1I	GCAGC	2 cut(s)	628, 841
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	118, 395, 919, 924
BtsCI	GGATG	4 cut(s)	552, 765, 826, 1046
BtsIMutI	CAGTG	2 cut(s)	879, 911
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	901
Csp6I	GTAC	3 cut(s)	132, 261, 1079
CviAII	CATG	6 cut(s)	114, 538, 706, 739, 766, 887
CviQI	GTAC	3 cut(s)	132, 261, 1079
DdeI	CTNAG	5 cut(s)	301, 334, 527, 798, 849
DpnI	GATC	4 cut(s)	513, 532, 878, 1054
DpnII	GATC	4 cut(s)	511, 530, 876, 1052
EaeI	YGGCCR	3 cut(s)	116, 393, 922
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Ecl136II	GAGCTC	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	919
Eco24I	GRGCYC	2 cut(s)	302, 940
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	901
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	4 cut(s)	243, 608, 681, 978
Eco88I	CYCGRG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	300
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	919
EcoRV	GATATC	1 cut(s)	958
EcoT38I	GRGCYC	2 cut(s)	302, 940
FaeI	CATG	6 cut(s)	117, 541, 709, 742, 769, 890
FaiI	YATR	6 cut(s)	115, 539, 707, 740, 767, 888
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	6 cut(s)	113, 537, 705, 738, 765, 886
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	3 cut(s)	542, 617, 855
FokI	GGATG	4 cut(s)	539, 772, 833, 1053
FriOI	GRGCYC	2 cut(s)	302, 940
Fsp4HI	GCNGC	3 cut(s)	542, 617, 855
FspBI	CTAG	1 cut(s)	1071
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	3 cut(s)	542, 617, 855
HaeIII	GGCC	4 cut(s)	118, 395, 919, 924
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	6 cut(s)	117, 541, 709, 742, 769, 890
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	2 cut(s)	64, 570
HinfI	GANTC	2 cut(s)	346, 828
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	7 cut(s)	80, 201, 230, 575, 711, 823, 943
Hpy166II	GTNNAC	3 cut(s)	685, 795, 892
Hpy188I	TCNGA	6 cut(s)	15, 223, 304, 530, 850, 997
Hpy188III	TCNNGA	3 cut(s)	185, 355, 1027
Hpy8I	GTNNAC	3 cut(s)	685, 795, 892
HpyAV	CCTTC	8 cut(s)	218, 555, 598, 632, 656, 759, 797, 892
HpyCH4III	ACNGT	5 cut(s)	75, 201, 265, 874, 970
HpyCH4V	TGCA	6 cut(s)	309, 322, 783, 857, 947, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 944
HpyF3I	CTNAG	5 cut(s)	301, 334, 527, 798, 849
Hsp92II	CATG	6 cut(s)	117, 541, 709, 742, 769, 890
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	511, 530, 876, 1052
LguI	GCTCTTC	1 cut(s)	649
LmnI	GCTCC	2 cut(s)	587, 613
Lsp1109I	GCAGC	2 cut(s)	628, 841
LweI	GCATC	2 cut(s)	6, 488
MaeI	CTAG	1 cut(s)	1071
MaeIII	GTNAC	4 cut(s)	178, 563, 829, 868
MalI	GATC	4 cut(s)	513, 532, 878, 1054
MboI	GATC	4 cut(s)	511, 530, 876, 1052
MboII	GAAGA	7 cut(s)	378, 666, 708, 717, 965, 984, 1010
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	302, 940
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	5 cut(s)	43, 147, 217, 786, 948
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	2 cut(s)	355, 837
MmeI	TCCRAC	1 cut(s)	591
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	2 cut(s)	371, 1084
MslI	CAYNNNNRTG	2 cut(s)	519, 743
Msp20I	TGGCCA	1 cut(s)	924
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	921
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	2 cut(s)	306, 944
NdeII	GATC	4 cut(s)	511, 530, 876, 1052
NlaIII	CATG	6 cut(s)	117, 541, 709, 742, 769, 890
NmuCI	GTSAC	3 cut(s)	563, 829, 868
PceI	AGGCCT	1 cut(s)	919
PciSI	GCTCTTC	1 cut(s)	649
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	543, 618, 856
PleI	GAGTC	2 cut(s)	354, 836
PpsI	GAGTC	2 cut(s)	354, 836
Psp124BI	GAGCTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	919
PspPI	GGNCC	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	3 cut(s)	133, 262, 1080
RsaNI	GTAC	3 cut(s)	132, 261, 1079
RseI	CAYNNNNRTG	2 cut(s)	519, 743
SacI	GAGCTC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	649
SaqAI	TTAA	2 cut(s)	371, 1084
SatI	GCNGC	3 cut(s)	542, 617, 855
Sau3AI	GATC	4 cut(s)	511, 530, 876, 1052
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	2 cut(s)	355, 837
ScrFI	CCNGG	1 cut(s)	921
SduI	GDGCHC	2 cut(s)	302, 940
SfaNI	GCATC	2 cut(s)	6, 488
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	1 cut(s)	901
SmiMI	CAYNNNNRTG	2 cut(s)	519, 743
SmlI	CTYRAG	2 cut(s)	183, 1025
SmoI	CTYRAG	2 cut(s)	183, 1025
Sse9I	AATT	5 cut(s)	43, 147, 217, 786, 948
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	4 cut(s)	381, 493, 542, 834
SspMI	CTAG	1 cut(s)	1071
SstI	GAGCTC	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	1 cut(s)	919
TaaI	ACNGT	5 cut(s)	75, 201, 265, 874, 970
TasI	AATT	5 cut(s)	43, 147, 217, 786, 948
TatI	WGTACW	1 cut(s)	1078
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	371, 1084
Tru9I	TTAA	2 cut(s)	371, 1084
TscAI	CASTG	2 cut(s)	879, 911
TseFI	GTSAC	3 cut(s)	563, 829, 868
TseI	GCWGC	2 cut(s)	616, 854
Tsp45I	GTSAC	3 cut(s)	563, 829, 868
TspDTI	ATGAA	3 cut(s)	521, 717, 754
TspRI	CASTG	2 cut(s)	879, 911
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	901
XapI	RAATTY	2 cut(s)	147, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.