Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003385

Physical Location & Seq

Genomic Coordinates Forward (+)

620691 .. 623000

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGTGGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAGACACTACTATGGAAGAGAAGATACCATTTCTGCAAATGCTTCAATGCATAGAACACCCTTTTACAACAACAGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTGTCTCACCCTTGAAACAAACATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGATCCAAGAACAGAAAACGGAGCAGTAACGGTCAAAGAAAAAAGAAAACGGAAACGTACAAGAGCTCCAAAGAACAAAGACGAAGTTGAAAACCAAAGGATGACTCACATTGCCGTCGAACGTAATCGAAGACGACAAATGAACGAACACTTAAACTCTCTCCGATCTCTCATGCCTCCTTCGTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGAACTAGAGCAACTCTTGCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAACTCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCTATTTCTAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGACAGAAGTGGAGGCTACGGTGATACAGAACCATGTGAGCTTAAAAGTTCGGTGTAAGAGAGGAAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACATCTCACTATCTCTTCTTCCTTTGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAGATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTCGAGCAAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

315

Amino Acids

35.31

Weight (kDa)

5.97

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	113 - 164	3e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46810 AT2G46810 AT2G46810 AT2G46810 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT3G61950 AT4G01460 AT4G01460
fragaria_vesca	FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g13190 FvH4_7g17790 FvH4_7g17790 FvH4_7g17790
malus_domestica	MD01G1089300.v1.1 MD07G1160700.v1.1
prunus_persica	Prupe.2G198800_v2.0.a1 Prupe.2G198800_v2.0.a1
pyrus_communis	pycom01g11350 pycom07g15680
rosa_chinensis	RchiOBHm_Chr1g0361191
rosa_laevigata	RLG00000027740
rosa_multiflora	Rmu_sc0007111.1_g000017
rosa_roxburghii	Rroxscaffold_4G00295280
rosa_rugosa	Rorug01G0287400.1
rosa_samantha	Rh1AG298300 Rh1BG262200 Rh1CG279600 Rh1DG292400
rosa_wichuraiana	Rw1G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	5 cut(s)	154, 209, 239, 252, 868
AcyI	GRCGYC	2 cut(s)	557, 620
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	6 cut(s)	98, 197, 332, 434, 761, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	7 cut(s)	183, 308, 449, 515, 702, 746, 772
AluI	AGCT	7 cut(s)	183, 308, 449, 515, 702, 746, 772
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	191, 582, 757
AlwI	GGATC	5 cut(s)	154, 209, 239, 252, 868
AsuC2I	CCSGG	2 cut(s)	219, 236
AsuHPI	GGTGA	5 cut(s)	35, 181, 452, 694, 926
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	2 cut(s)	39, 379
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	3 cut(s)	524, 832, 839
BceAI	ACGGC	4 cut(s)	341, 570, 654, 869
BcnI	CCSGG	2 cut(s)	219, 236
BcoDI	GTCTC	3 cut(s)	191, 582, 757
BfaI	CTAG	4 cut(s)	170, 488, 509, 606
BglII	AGATCT	2 cut(s)	735, 894
Bme1390I	CCNGG	2 cut(s)	219, 236
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	219, 236
BpiI	GAAGAC	2 cut(s)	39, 379
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	2 cut(s)	219, 236
BsaHI	GRCGYC	2 cut(s)	557, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	348, 535
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	218, 236
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	3 cut(s)	191, 582, 757
BsmBI	CGTCTC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
BspACI	CCGC	1 cut(s)	651
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	5 cut(s)	154, 209, 239, 252, 868
BsrDI	GCAATG	1 cut(s)	351
BssMI	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
BssNI	GRCGYC	2 cut(s)	557, 620
Bst4CI	ACNGT	3 cut(s)	274, 682, 914
Bst6I	CTCTTC	3 cut(s)	63, 601, 802
BstACI	GRCGYC	2 cut(s)	557, 620
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	586, 774
BstDEI	CTNAG	3 cut(s)	516, 935, 945
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	348, 535
BstKTI	GATC	7 cut(s)	162, 217, 247, 410, 738, 863, 897
BstMAI	GTCTC	3 cut(s)	191, 582, 757
BstMBI	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNSI	RCATGY	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	217, 234
BstV2I	GAAGAC	2 cut(s)	39, 379
BstX2I	RGATCY	5 cut(s)	159, 214, 244, 735, 894
BstYI	RGATCY	5 cut(s)	159, 214, 244, 735, 894
BtsCI	GGATG	2 cut(s)	348, 535
Cac8I	GCNNGC	2 cut(s)	586, 774
CseI	GACGC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	4 cut(s)	415, 585, 695, 922
CviJI	RGCY	9 cut(s)	183, 308, 449, 515, 677, 702, 746, 772, 884
CviKI_1	RGCY	9 cut(s)	183, 308, 449, 515, 677, 702, 746, 772, 884
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	3 cut(s)	516, 935, 945
DpnI	GATC	7 cut(s)	161, 216, 246, 409, 737, 862, 896
DpnII	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
Eam1104I	CTCTTC	3 cut(s)	63, 601, 802
EarI	CTCTTC	3 cut(s)	63, 601, 802
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	4 cut(s)	418, 588, 698, 925
FaiI	YATR	6 cut(s)	65, 104, 416, 586, 696, 923
FatI	CATG	4 cut(s)	414, 584, 694, 921
FblI	GTMKAC	1 cut(s)	614
FokI	GGATG	2 cut(s)	355, 542
FriOI	GRGCYC	1 cut(s)	310
FspBI	CTAG	4 cut(s)	170, 488, 509, 606
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	2 cut(s)	218, 236
HgaI	GACGC	1 cut(s)	546
Hin1I	GRCGYC	2 cut(s)	557, 620
Hin1II	CATG	4 cut(s)	418, 588, 698, 925
HindIII	AAGCTT	2 cut(s)	447, 770
HinfI	GANTC	4 cut(s)	173, 346, 645, 778
HpaII	CCGG	2 cut(s)	218, 236
HphI	GGTGA	5 cut(s)	35, 181, 452, 694, 926
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	5 cut(s)	48, 55, 407, 625, 894
Hpy188III	TCNNGA	4 cut(s)	157, 509, 754, 835
Hpy8I	GTNNAC	1 cut(s)	615
Hpy99I	CGWCG	4 cut(s)	362, 562, 622, 625
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	3 cut(s)	274, 682, 914
HpyCH4IV	ACGT	3 cut(s)	298, 364, 620
HpyCH4V	TGCA	5 cut(s)	88, 102, 502, 584, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	3 cut(s)	516, 935, 945
HpySE526I	ACGT	3 cut(s)	298, 364, 620
Hsp92I	GRCGYC	2 cut(s)	557, 620
Hsp92II	CATG	4 cut(s)	418, 588, 698, 925
Kzo9I	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
LmnI	GCTCC	2 cut(s)	263, 313
LpnPI	CCDG	3 cut(s)	170, 231, 249
MaeI	CTAG	4 cut(s)	170, 488, 509, 606
MaeII	ACGT	3 cut(s)	298, 364, 620
MaeIII	GTNAC	2 cut(s)	268, 440
MalI	GATC	7 cut(s)	161, 216, 246, 409, 737, 862, 896
MboI	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
MflI	RGATCY	5 cut(s)	159, 214, 244, 735, 894
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	26, 38, 854
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	4 cut(s)	429, 455, 667, 716
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	3 cut(s)	395, 704, 740
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	218, 236
MspR9I	CCNGG	2 cut(s)	219, 236
MwoI	GCNNNNNNNGC	1 cut(s)	499
NciI	CCSGG	2 cut(s)	219, 236
NdeII	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
NlaIII	CATG	4 cut(s)	418, 588, 698, 925
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	173, 645, 778
PflFI	GACNNNGTC	1 cut(s)	812
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	5 cut(s)	159, 214, 244, 735, 894
PsyI	GACNNNGTC	1 cut(s)	812
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	3 cut(s)	395, 704, 740
Sau3AI	GATC	7 cut(s)	159, 214, 244, 407, 735, 860, 894
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	219, 236
SduI	GDGCHC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SphI	GCATGC	1 cut(s)	588
Sse9I	AATT	3 cut(s)	26, 38, 854
SsiI	CCGC	1 cut(s)	651
SspMI	CTAG	4 cut(s)	170, 488, 509, 606
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	217, 234
TaaI	ACNGT	3 cut(s)	274, 682, 914
TaiI	ACGT	3 cut(s)	301, 367, 623
TaqI	TCGA	6 cut(s)	360, 370, 452, 755, 900, 940
TasI	AATT	3 cut(s)	26, 38, 854
TfiI	GAWTC	3 cut(s)	173, 645, 778
Tru1I	TTAA	3 cut(s)	395, 704, 740
Tru9I	TTAA	3 cut(s)	395, 704, 740
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	5 cut(s)	398, 466, 555, 558, 878
TspGWI	ACGGA	2 cut(s)	276, 307
Tth111I	GACNNNGTC	1 cut(s)	812
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	4 cut(s)	170, 488, 509, 606
ZraI	GACGTC	1 cut(s)	621
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.