Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Reverse (-)

22975328 .. 22976603

Gene Structure 1276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTTAACCAACTCGGAATCGAAGAGAGTGAAGTTCCAAAGTTGTGTTTGGATCTTTACAAAGAATATGGAACCACCATGGCTGGTCTCAAGGTTATGGGTTACGAATTCGACAACGATGAATTCCATGAATATGTCCATGGAAGACTTCCCTACGAGAAACTAAAACCTGATCCACTCCTCCGTAACCTTCTCCTCTCTATGCCTCACCGTAAAATCATCTTTACTAACGCAGACAAAGCTCACGCAACACGAGCTCTCAACAGATTGGGTCTTGAGGACTGCTTTGAAGGAATCATTTGCTTCGAAACACTAAACCCTTCTTCTGATTCAAACACTCAAATCCTCTGTAAACCCTCTGTTGAAGCATTTGAAGCTGCAATTCGCATTGCAGACATTGTTGATCCACGCAAAACGATATTCTTCGATGACAGTATTCGTAACATCGCTAGTGCTAAAGCAACAGGGCTAAAAACCGTGTTTGTGGGGGAATCAGTGCTAGTTCCAGGTGCTGACTATGCACTAAGCAGCATTCATAACATAAAGGAAGCAATACCTGATTTATGGGAAGACAACAAAGATGAGAAGCTCGAGCCAATTGTTCAGCAAGCCGCGGTTGCAACCATGGTCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

212

Amino Acids

23.68

Weight (kDa)

4.92

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	70 - 155	4.9e-10	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	73 - 162	3e-07	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	614
AciI	CCGC	2 cut(s)	612, 614
AclWI	GGATC	3 cut(s)	60, 167, 398
AcsI	RAATTY	2 cut(s)	107, 122
AgsI	TTSAA	4 cut(s)	290, 333, 365, 374
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	242, 257, 377, 589
AluI	AGCT	4 cut(s)	242, 257, 377, 589
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	60, 167, 398
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	377, 528
ApoI	RAATTY	2 cut(s)	107, 122
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	151, 576
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	364, 540
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	450, 500
BisI	GCNGC	3 cut(s)	378, 529, 612
BlsI	GCNGC	3 cut(s)	379, 530, 613
Bme1390I	CCNGG	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	151, 576
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	74, 296
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	78, 139, 612, 624
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	78, 139, 612, 624
BseMI	GCAATG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	170, 185
BseXI	GCAGC	2 cut(s)	364, 540
Bsh1236I	CGCG	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	531
Bso31I	GGTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	52, 172, 403
Bsp19I	CCATGG	3 cut(s)	78, 139, 624
BspACI	CCGC	2 cut(s)	612, 614
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	3 cut(s)	60, 167, 398
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	4 cut(s)	78, 139, 612, 624
BssMI	GATC	3 cut(s)	52, 172, 403
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	3 cut(s)	78, 139, 624
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	212, 434, 478
Bst6I	CTCTTC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	524, 636
BstDSI	CCRYGG	4 cut(s)	78, 139, 612, 624
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	3 cut(s)	55, 175, 406
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	52, 172, 403
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 254, 374, 518, 617
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	2 cut(s)	364, 540
BstV2I	GAAGAC	2 cut(s)	151, 576
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtgI	CCRYGG	4 cut(s)	78, 139, 612, 624
BtgZI	GCGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr42I	CCGCGG	1 cut(s)	615
CviAII	CATG	4 cut(s)	79, 128, 140, 625
CviJI	RGCY	8 cut(s)	83, 242, 257, 377, 469, 589, 595, 611
CviKI_1	RGCY	8 cut(s)	83, 242, 257, 377, 469, 589, 595, 611
DdeI	CTNAG	2 cut(s)	524, 636
DpnI	GATC	3 cut(s)	54, 174, 405
DpnII	GATC	3 cut(s)	52, 172, 403
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	78, 139, 624
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	107, 122
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	3 cut(s)	78, 139, 624
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	3 cut(s)	78, 139, 624
FaeI	CATG	4 cut(s)	82, 131, 143, 628
FatI	CATG	4 cut(s)	78, 127, 139, 624
Fnu4HI	GCNGC	3 cut(s)	378, 529, 612
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	3 cut(s)	378, 529, 612
FspBI	CTAG	2 cut(s)	450, 500
GluI	GCNGC	3 cut(s)	378, 529, 612
Hin1II	CATG	4 cut(s)	82, 131, 143, 628
HinfI	GANTC	4 cut(s)	18, 294, 329, 491
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	17, 328
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	200, 284, 330
HpyCH4III	ACNGT	3 cut(s)	212, 434, 478
HpyCH4V	TGCA	4 cut(s)	380, 392, 521, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 254, 374, 518, 617
HpyF3I	CTNAG	2 cut(s)	524, 636
Hsp92II	CATG	4 cut(s)	82, 131, 143, 628
KspI	CCGCGG	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	52, 172, 403
LpnPI	CCDG	6 cut(s)	69, 183, 450, 492, 519, 570
Lsp1109I	GCAGC	2 cut(s)	364, 540
MaeI	CTAG	2 cut(s)	450, 500
MaeIII	GTNAC	3 cut(s)	101, 185, 440
MalI	GATC	3 cut(s)	54, 174, 405
MboI	GATC	3 cut(s)	52, 172, 403
MboII	GAAGA	5 cut(s)	35, 156, 315, 415, 581
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	4 cut(s)	107, 122, 381, 597
MnlI	CCTC	6 cut(s)	191, 206, 216, 271, 356, 367
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	5 cut(s)	239, 254, 374, 518, 617
NcoI	CCATGG	3 cut(s)	78, 139, 624
NdeII	GATC	3 cut(s)	52, 172, 403
NlaIII	CATG	4 cut(s)	82, 131, 143, 628
NlaIV	GGNNCC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	590
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	18, 294, 329, 491
PkrI	GCNGC	3 cut(s)	379, 530, 613
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	3 cut(s)	378, 529, 612
Sau3AI	GATC	3 cut(s)	52, 172, 403
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	9 cut(s)	96, 172, 192, 244, 259, 379, 511, 559, 591
Sfr274I	CTCGAG	1 cut(s)	590
Sfr303I	CCGCGG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	89, 275, 590
SmoI	CTYRAG	3 cut(s)	89, 275, 590
Sse9I	AATT	4 cut(s)	107, 122, 381, 597
SsiI	CCGC	2 cut(s)	612, 614
SspMI	CTAG	2 cut(s)	450, 500
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	3 cut(s)	78, 139, 624
TaaI	ACNGT	3 cut(s)	212, 434, 478
TaqI	TCGA	5 cut(s)	21, 111, 306, 426, 591
TasI	AATT	4 cut(s)	107, 122, 381, 597
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	4 cut(s)	18, 294, 329, 491
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	377, 528
TspDTI	ATGAA	3 cut(s)	135, 144, 524
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	501
XapI	RAATTY	2 cut(s)	107, 122
XhoI	CTCGAG	1 cut(s)	590
XspI	CTAG	2 cut(s)	450, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.