Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

18135603 .. 18138847

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAATGCGGATTGGAGCGGGAGGCGACCAGAACGATCGAGAAGCTTTCTTGGAGGCTTGACTCGAAGTACCATATTCTTGAAGATGGATGTTGCTGGGAAGTCTAGTGGAGCCAAATATGAGTGCTTGCTTTTTGATTTGGATGATACTCTGTACCCCATGAGCTCTGGTCTCAACTTGGCCTGCCGGAAGAACATTGAAGAGTACATGCTGCAACACTTGCAAATTGAAGAAAGTGAGGTATCAAGGATGTGCCTGGAATTGTACAGAGAACATGGGACAACCATGGCCGGTCTAAAGGCTCTTGGTCACGAATTTGATGATGATGAGTTTCATGCATATGTCCATGGAAGACTACCCTATGATGCGTTGAAGCCTGATCTAGTGTTAAGAAACCTTCTCTTATCTATGCCACAGAGAAAAATAATCTTCACTAACGCTGACAAAGCACATGCAGCTGAAGTTCTCAGGAGGTTGTGCTTGGAAGATTATGACGATGTTATAGAGCATGCTCCAGAGGCTGCTGCCACTGATTGCACCAGAAATAATCTCAGTCCCAAGTCACCAATTCTGTGCAAACCCTCTGTTGAAGCAATTGAAGCTGCTATTCGTATAGCAAATGTTGACCCACAAAAAACTATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTTATTGTCGGGAGTTCAGAGCTAGTGCCTGGTGCAGATTATGTGCTGCGCAGCATACATAACATCCGAGAAGCAATACCTGAGATATGGGAAGGGGAAGAAGGGCAACAACTAGAGCAATTTATCCAGTCTACTGCAGTTGAAACAGTGATCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

286

Amino Acids

31.9

Weight (kDa)

5.11

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	41 - 230	2.8e-11	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	44 - 236	6.1e-07	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	749
AccBSI	CCGCTC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	830
AciI	CCGC	2 cut(s)	8, 18
AclWI	GGATC	1 cut(s)	844
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	4 cut(s)	70, 155, 206, 266
AgsI	TTSAA	7 cut(s)	82, 200, 230, 373, 590, 599, 842
AjnI	CCWGG	2 cut(s)	255, 727
AluBI	AGCT	5 cut(s)	45, 165, 458, 602, 721
AluI	AGCT	5 cut(s)	45, 165, 458, 602, 721
Alw21I	GWGCWC	2 cut(s)	167, 661
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	844
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	180, 288
ApeKI	GCWGC	8 cut(s)	211, 455, 521, 524, 602, 683, 745, 750
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	750
AsuHPI	GGTGA	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	167, 661
BbvI	GCAGC	8 cut(s)	198, 467, 508, 511, 589, 695, 732, 762
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	257, 729
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	105, 383, 722, 812
BfmI	CTRYAG	1 cut(s)	834
BisI	GCNGC	8 cut(s)	212, 456, 522, 525, 603, 684, 746, 751
BlsI	GCNGC	8 cut(s)	213, 457, 523, 526, 604, 685, 747, 752
Bme1390I	CCNGG	2 cut(s)	257, 729
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	257, 729
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	285, 346
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	257, 729
BseDI	CCNNGG	2 cut(s)	285, 346
BseGI	GGATG	4 cut(s)	94, 148, 255, 762
BseMII	CTCAG	3 cut(s)	481, 565, 771
BseNI	ACTGG	1 cut(s)	826
BseXI	GCAGC	8 cut(s)	198, 467, 508, 511, 589, 695, 732, 762
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	753
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	182, 290
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	167, 661
BsiSI	CCGG	2 cut(s)	187, 291
BslFI	GGGAC	2 cut(s)	292, 540
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	292, 540
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	182, 290
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	167, 661
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	35, 379, 849
Bsp19I	CCATGG	2 cut(s)	285, 346
BspACI	CCGC	2 cut(s)	8, 18
BspANI	GGCC	2 cut(s)	182, 290
BspCNI	CTCAG	3 cut(s)	480, 564, 772
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	1 cut(s)	844
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	285, 346
BssMI	GATC	3 cut(s)	35, 379, 849
BssT1I	CCWWGG	2 cut(s)	285, 346
Bst2UI	CCWGG	2 cut(s)	257, 729
Bst4CI	ACNGT	3 cut(s)	656, 700, 847
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	128, 184, 510
BstDEI	CTNAG	3 cut(s)	467, 551, 780
BstDSI	CCRYGG	2 cut(s)	285, 346
BstF5I	GGATG	4 cut(s)	94, 148, 255, 762
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	3 cut(s)	38, 382, 852
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	35, 379, 849
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 446, 455, 518, 599
BstNI	CCWGG	2 cut(s)	257, 729
BstNSI	RCATGY	3 cut(s)	211, 455, 512
BstSCI	CCNGG	2 cut(s)	255, 727
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	8 cut(s)	198, 467, 508, 511, 589, 695, 732, 762
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	182, 290
BtgI	CCRYGG	2 cut(s)	285, 346
BtsCI	GGATG	4 cut(s)	94, 148, 255, 762
BtsIMutI	CAGTG	3 cut(s)	528, 661, 852
Cac8I	GCNNGC	3 cut(s)	128, 184, 510
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	290
Csp6I	GTAC	4 cut(s)	69, 154, 205, 265
CviAII	CATG	8 cut(s)	160, 208, 275, 286, 335, 347, 452, 509
CviQI	GTAC	4 cut(s)	69, 154, 205, 265
DdeI	CTNAG	3 cut(s)	467, 551, 780
DpnI	GATC	3 cut(s)	37, 381, 851
DpnII	GATC	3 cut(s)	35, 379, 849
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	285, 346
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	255, 727
EcoT14I	CCWWGG	2 cut(s)	285, 346
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	285, 346
FaeI	CATG	8 cut(s)	163, 211, 278, 289, 338, 350, 455, 512
FaqI	GGGAC	2 cut(s)	292, 540
FatI	CATG	8 cut(s)	159, 207, 274, 285, 334, 346, 451, 508
FauI	CCCGC	1 cut(s)	11
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	830
Fnu4HI	GCNGC	8 cut(s)	212, 456, 522, 525, 603, 684, 746, 751
FokI	GGATG	4 cut(s)	101, 155, 262, 749
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	8 cut(s)	212, 456, 522, 525, 603, 684, 746, 751
FspBI	CTAG	4 cut(s)	105, 383, 722, 812
FspI	TGCGCA	1 cut(s)	749
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	8 cut(s)	212, 456, 522, 525, 603, 684, 746, 751
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	182, 290
HapII	CCGG	2 cut(s)	187, 291
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	8 cut(s)	163, 211, 278, 289, 338, 350, 455, 512
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	187, 291
HphI	GGTGA	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	625, 831
Hpy188I	TCNGA	2 cut(s)	718, 767
Hpy188III	TCNNGA	6 cut(s)	39, 79, 311, 469, 515, 709
Hpy8I	GTNNAC	2 cut(s)	625, 831
HpyAV	CCTTC	4 cut(s)	407, 673, 785, 794
HpyCH4III	ACNGT	3 cut(s)	656, 700, 847
HpyCH4V	TGCA	9 cut(s)	214, 223, 338, 455, 537, 576, 734, 836, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 446, 455, 518, 599
HpyF3I	CTNAG	3 cut(s)	467, 551, 780
Hsp92II	CATG	8 cut(s)	163, 211, 278, 289, 338, 350, 455, 512
HspAI	GCGC	1 cut(s)	748
Kzo9I	GATC	3 cut(s)	35, 379, 849
LmnI	GCTCC	3 cut(s)	15, 110, 517
Lsp1109I	GCAGC	8 cut(s)	198, 467, 508, 511, 589, 695, 732, 762
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	4 cut(s)	105, 383, 722, 812
MaeIII	GTNAC	2 cut(s)	308, 561
MalI	GATC	3 cut(s)	37, 381, 851
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	3 cut(s)	35, 379, 849
MboII	GAAGA	8 cut(s)	94, 202, 212, 242, 363, 421, 497, 809
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	2 cut(s)	167, 661
MluCI	AATT	6 cut(s)	225, 260, 314, 567, 594, 818
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	15, 47, 232, 465, 511, 592
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	187, 291
MspR9I	CCNGG	2 cut(s)	257, 729
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	257, 729
MwoI	GCNNNNNNNGC	5 cut(s)	220, 446, 455, 518, 599
NcoI	CCATGG	2 cut(s)	285, 346
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	35, 379, 849
NlaIII	CATG	8 cut(s)	163, 211, 278, 289, 338, 350, 455, 512
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	308, 561
NsbI	TGCGCA	1 cut(s)	749
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	3 cut(s)	211, 455, 512
PaeI	GCATGC	1 cut(s)	512
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	8 cut(s)	213, 457, 523, 526, 604, 685, 747, 752
Ple19I	CGATCG	1 cut(s)	38
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	255, 727
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	255, 727
PspN4I	GGNNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	521
PvuI	CGATCG	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	4 cut(s)	70, 155, 206, 266
RsaNI	GTAC	4 cut(s)	69, 154, 205, 265
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	8 cut(s)	212, 456, 522, 525, 603, 684, 746, 751
Sau3AI	GATC	3 cut(s)	35, 379, 849
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	257, 729
SduI	GDGCHC	2 cut(s)	167, 661
SetI	ASST	9 cut(s)	47, 167, 243, 399, 460, 476, 604, 723, 781
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	6 cut(s)	225, 260, 314, 567, 594, 818
SsiI	CCGC	2 cut(s)	8, 18
SspMI	CTAG	4 cut(s)	105, 383, 722, 812
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	255, 727
StyI	CCWWGG	2 cut(s)	285, 346
TaaI	ACNGT	3 cut(s)	656, 700, 847
TaqI	TCGA	3 cut(s)	38, 64, 661
TasI	AATT	6 cut(s)	225, 260, 314, 567, 594, 818
TatI	WGTACW	2 cut(s)	204, 264
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	3 cut(s)	535, 661, 852
TseFI	GTSAC	2 cut(s)	308, 561
TseI	GCWGC	8 cut(s)	211, 455, 521, 524, 602, 683, 745, 750
Tsp45I	GTSAC	2 cut(s)	308, 561
TspDTI	ATGAA	3 cut(s)	17, 323, 683
TspRI	CASTG	3 cut(s)	535, 661, 852
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	3 cut(s)	211, 455, 512
XmiI	GTMKAC	1 cut(s)	830
XspI	CTAG	4 cut(s)	105, 383, 722, 812
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.