Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

37393757 .. 37396213

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1291700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATGCGGCCATTGGGAGGTCCGGTGGAGCCAAATATGACTGCTTGGTTTTTGATTTGGATGATACTCTTTATCCCCTGAGCTATGGTCTCAACTTGGCATGTCGCAAGAATATTGAAGAGTTCATGCTGCAGCAATTGCAAATAGAAGAAGGTGAGGTACCAAGGATGTGCCTGGACCTATACCGGGAATATGGGACAACCATGGCTGGTCTAAAGGCTCTTGGTTACGAATTTGACAATGATGAGTTTCATGCCTATGTCCACGGTAGACTGCCCTATGATGTATTGACGCACGATCTGGTGTTAAGGAACCTTCTGTTATCAATGCCCCAGAGAAAAATAATCTTTACTAACTCAGACAGGGCGCATGCAGCTCAAGTTCTCAACAGGTTGTGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAACCCTCCTCATAATCTTTATGATGAAACAGAAGTACTTGATTGCATGAGCAGTACTCCTACTGCAGCAGATGACCTCCGTACGGTCCTCCCAAAACAGGCACTGGAGGCTAAAGCCACTGACTTGACCGTTACTAGTCTAATTGGTCCCCCCAAGTCACCAATCCTTTGCAAACCCTCCGTGAAAGCAACTGAAGCTGCTATTCGTATTGCAAATGTTGATCCAAAGAAAACAATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTCATTGTGGGGAGCTCAGTACTAGTGCCCGGTGCAGATCATGCGTTGAGTAGTATCCACAACATTAAAGAAGCATTGCCTGAGATATGGGAAGGGGAAGAAGGCCAACAACTCGAACAATTTATGCAGTCAAATACCGTTGAAACAGTAGTCCTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

299

Amino Acids

32.89

Weight (kDa)

4.77

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	5 cut(s)	162, 477, 496, 523, 756
AfiI	CCNNNNNNNGG	4 cut(s)	18, 187, 523, 538
AgsI	TTSAA	4 cut(s)	119, 416, 434, 878
AhlI	ACTAGT	2 cut(s)	575, 757
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	4 cut(s)	84, 377, 638, 750
AluI	AGCT	4 cut(s)	84, 377, 638, 750
Alw21I	GWGCWC	2 cut(s)	697, 752
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	9, 838
ApeKI	GCWGC	6 cut(s)	130, 133, 374, 506, 638, 719
ApoI	RAATTY	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	4 cut(s)	21, 178, 526, 587
AsuC2I	CCSGG	2 cut(s)	188, 765
AsuHPI	GGTGA	2 cut(s)	167, 591
AvaII	GGWCC	4 cut(s)	21, 178, 526, 587
BaeGI	GKGCMC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	752
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
Bbv12I	GWGCWC	2 cut(s)	697, 752
BbvI	GCAGC	6 cut(s)	117, 145, 386, 518, 625, 731
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	800
BcnI	CCSGG	2 cut(s)	188, 765
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	2 cut(s)	575, 757
BfaI	CTAG	3 cut(s)	576, 758, 890
BfmI	CTRYAG	2 cut(s)	131, 504
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	7 cut(s)	9, 131, 134, 375, 507, 639, 720
BlsI	GCNGC	7 cut(s)	10, 132, 135, 376, 508, 640, 721
BmcAI	AGTACT	3 cut(s)	477, 496, 756
Bme1390I	CCNGG	3 cut(s)	176, 188, 765
Bme18I	GGWCC	4 cut(s)	21, 178, 526, 587
BmgT120I	GGNCC	4 cut(s)	21, 178, 526, 587
BmiI	GGNNCC	4 cut(s)	31, 162, 314, 589
BmrFI	CCNGG	3 cut(s)	176, 188, 765
BmsI	GCATC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	2 cut(s)	188, 765
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	164, 204, 265
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 187, 523, 538
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	164, 204, 265
BseGI	GGATG	3 cut(s)	10, 67, 174
BseLI	CCNNNNNNNGG	4 cut(s)	18, 187, 523, 538
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	4 cut(s)	71, 372, 765, 807
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	6 cut(s)	117, 145, 386, 518, 625, 731
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	2 cut(s)	11, 840
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	697, 752
BsiSI	CCGG	3 cut(s)	24, 187, 765
BsiWI	CGTACG	1 cut(s)	521
BslFI	GGGAC	2 cut(s)	211, 573
BslI	CCNNNNNNNGG	4 cut(s)	18, 187, 523, 538
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	211, 573
BsnI	GGCC	2 cut(s)	11, 840
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	697, 752, 765
Bsp143I	GATC	3 cut(s)	298, 661, 772
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	11, 840
BspCNI	CTCAG	4 cut(s)	72, 371, 764, 808
BspLI	GGNNCC	4 cut(s)	31, 162, 314, 589
BspMAI	CTGCAG	2 cut(s)	135, 508
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	164, 204, 265
BssMI	GATC	3 cut(s)	298, 661, 772
BssT1I	CCWWGG	2 cut(s)	164, 204
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	7 cut(s)	269, 526, 571, 692, 736, 874, 883
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	3 cut(s)	139, 426, 776
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	4 cut(s)	80, 358, 751, 816
BstDSI	CCRYGG	2 cut(s)	204, 265
BstF5I	GGATG	3 cut(s)	10, 67, 174
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	3 cut(s)	301, 664, 775
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	298, 661, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 374, 426, 548, 635, 776
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	105, 374
BstSCI	CCNGG	3 cut(s)	174, 186, 763
BstSFI	CTRYAG	2 cut(s)	131, 504
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	6 cut(s)	117, 145, 386, 518, 625, 731
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	2 cut(s)	11, 840
BtgI	CCRYGG	2 cut(s)	204, 265
BtsCI	GGATG	3 cut(s)	10, 67, 174
BtsIMutI	CAGTG	3 cut(s)	542, 558, 697
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	544
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	4 cut(s)	21, 178, 526, 587
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	5 cut(s)	161, 476, 495, 522, 755
CviAII	CATG	7 cut(s)	102, 127, 205, 254, 371, 487, 776
CviQI	GTAC	5 cut(s)	161, 476, 495, 522, 755
DdeI	CTNAG	4 cut(s)	80, 358, 751, 816
DpnI	GATC	3 cut(s)	300, 663, 774
DpnII	GATC	3 cut(s)	298, 661, 772
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	2 cut(s)	164, 204
Eco24I	GRGCYC	1 cut(s)	752
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	4 cut(s)	21, 178, 526, 587
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	164, 204
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	2 cut(s)	164, 204
FaeI	CATG	7 cut(s)	105, 130, 208, 257, 374, 490, 779
FaqI	GGGAC	2 cut(s)	211, 573
FatI	CATG	7 cut(s)	101, 126, 204, 253, 370, 486, 775
FauNDI	CATATG	1 cut(s)	425
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	7 cut(s)	9, 131, 134, 375, 507, 639, 720
FokI	GGATG	3 cut(s)	17, 74, 181
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	7 cut(s)	9, 131, 134, 375, 507, 639, 720
FspBI	CTAG	3 cut(s)	576, 758, 890
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	7 cut(s)	9, 131, 134, 375, 507, 639, 720
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	11, 840
HapII	CCGG	3 cut(s)	24, 187, 765
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	7 cut(s)	105, 130, 208, 257, 374, 490, 779
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HpaII	CCGG	3 cut(s)	24, 187, 765
HphI	GGTGA	2 cut(s)	167, 591
Hpy166II	GTNNAC	2 cut(s)	265, 272
Hpy188I	TCNGA	1 cut(s)	361
Hpy8I	GTNNAC	2 cut(s)	265, 272
HpyAV	CCTTC	6 cut(s)	146, 326, 410, 709, 821, 830
HpyCH4III	ACNGT	7 cut(s)	269, 526, 571, 692, 736, 874, 883
HpyCH4V	TGCA	9 cut(s)	133, 142, 374, 486, 506, 612, 653, 770, 862
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 374, 426, 548, 635, 776
HpyF3I	CTNAG	4 cut(s)	80, 358, 751, 816
Hsp92II	CATG	7 cut(s)	105, 130, 208, 257, 374, 490, 779
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	298, 661, 772
LmnI	GCTCC	2 cut(s)	29, 747
Lsp1109I	GCAGC	6 cut(s)	117, 145, 386, 518, 625, 731
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	3 cut(s)	576, 758, 890
MaeIII	GTNAC	3 cut(s)	227, 571, 597
MalI	GATC	3 cut(s)	300, 663, 774
MboI	GATC	3 cut(s)	298, 661, 772
MboII	GAAGA	4 cut(s)	131, 161, 416, 845
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	3 cut(s)	697, 752, 765
MluCI	AATT	5 cut(s)	137, 233, 582, 675, 854
MnlI	CCTC	8 cut(s)	12, 151, 456, 459, 527, 539, 541, 628
MseI	TTAA	3 cut(s)	308, 441, 801
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	3 cut(s)	24, 187, 765
MspR9I	CCNGG	3 cut(s)	176, 188, 765
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	6 cut(s)	139, 374, 426, 548, 635, 776
NciI	CCSGG	2 cut(s)	188, 765
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	3 cut(s)	298, 661, 772
NlaIII	CATG	7 cut(s)	105, 130, 208, 257, 374, 490, 779
NlaIV	GGNNCC	4 cut(s)	31, 162, 314, 589
NmuCI	GTSAC	1 cut(s)	597
NspI	RCATGY	2 cut(s)	105, 374
PaeI	GCATGC	1 cut(s)	374
Pfl23II	CGTACG	1 cut(s)	521
PkrI	GCNGC	7 cut(s)	10, 132, 135, 376, 508, 640, 721
Psp124BI	GAGCTC	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspLI	CGTACG	1 cut(s)	521
PspN4I	GGNNCC	4 cut(s)	31, 162, 314, 589
PspPI	GGNCC	4 cut(s)	21, 178, 526, 587
PstI	CTGCAG	2 cut(s)	135, 508
PstNI	CAGNNNCTG	1 cut(s)	544
RsaI	GTAC	5 cut(s)	162, 477, 496, 523, 756
RsaNI	GTAC	5 cut(s)	161, 476, 495, 522, 755
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	308, 441, 801
SatI	GCNGC	7 cut(s)	9, 131, 134, 375, 507, 639, 720
Sau3AI	GATC	3 cut(s)	298, 661, 772
Sau96I	GGNCC	4 cut(s)	21, 178, 526, 587
ScaI	AGTACT	3 cut(s)	477, 496, 756
ScrFI	CCNGG	3 cut(s)	176, 188, 765
SduI	GDGCHC	3 cut(s)	697, 752, 765
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	2 cut(s)	131, 504
SinI	GGWCC	4 cut(s)	21, 178, 526, 587
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SpeI	ACTAGT	2 cut(s)	575, 757
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	5 cut(s)	137, 233, 582, 675, 854
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	3 cut(s)	576, 758, 890
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	3 cut(s)	174, 186, 763
StyI	CCWWGG	2 cut(s)	164, 204
TaaI	ACNGT	7 cut(s)	269, 526, 571, 692, 736, 874, 883
TaqI	TCGA	2 cut(s)	697, 849
TasI	AATT	5 cut(s)	137, 233, 582, 675, 854
TatI	WGTACW	3 cut(s)	475, 494, 754
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	308, 441, 801
Tru9I	TTAA	3 cut(s)	308, 441, 801
TscAI	CASTG	3 cut(s)	549, 565, 697
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	6 cut(s)	130, 133, 374, 506, 638, 719
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	4 cut(s)	115, 242, 480, 719
TspGWI	ACGGA	2 cut(s)	509, 610
TspRI	CASTG	3 cut(s)	549, 565, 697
VpaK11BI	GGWCC	4 cut(s)	21, 178, 526, 587
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	105, 374
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	3 cut(s)	576, 758, 890
ZrmI	AGTACT	3 cut(s)	477, 496, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.