Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

20784919 .. 20786267

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATGCTGCTATTGGGAGGTCCGGTGGAGCCAAATATGACTGCTTGCTTTTTGATTTGGATGATACTCTTTATCCCCTGAGCTCAGGCCTCAACTTGGCATGTCGCAAGAATATTGAAGAGTTCATGCTGCAGCAATTGCAAATAGAAGAAGGTGAGGTACCAAGGATGTGCCTGGACCTATACCGGGAATACGGGACAACCATGGCTGGTCTAAAGGCTCTTGGTTACGAATTTGACAACGATGAGTTTCATGCCTATGTCCACGGTAGACTGCCCTATGGCGTATTGACGCACGATCTGGTGTTAAGGAACCTTCTGTTATCAATGCCCCAGAGAAAAATAATCTTTACTAACGCAGACAGGGCGCATGCAGCTCAAGTTCTCAACAGGTTGGGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAACCCTCCTCATAATCTTGATGATGAAGCAGAAGAAGTACTTAATTGCATGAGCAGTACTCCTACTGCAGCAGATGACCTCCGTACGGTCTTCCCAAAACAGGCACTGGAGGCTAGAGCCACTGACTTGACCGTTACTAGTCTAATCGGTCCCCCCAAGTCACCAATCCCTTGCAAACCCTCTGTGAAAGCAACTGAAGCTGCTATTCGTATTGCAAATGTTGATCCAAAGAAAACAGTAAGATCGATCATTCAATGCTTTCTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

237

Amino Acids

26.19

Weight (kDa)

4.98

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	4 cut(s)	162, 480, 499, 526
AfiI	CCNNNNNNNGG	4 cut(s)	97, 187, 526, 541
AgsI	TTSAA	4 cut(s)	119, 416, 434, 695
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	4 cut(s)	84, 377, 641, 708
AluI	AGCT	4 cut(s)	84, 377, 641, 708
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	659
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	6 cut(s)	8, 130, 133, 374, 509, 641
ApoI	RAATTY	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	21, 178, 590
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	167, 594
AvaII	GGWCC	3 cut(s)	21, 178, 590
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
BbsI	GAAGAC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	5 cut(s)	117, 145, 386, 521, 628
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	188
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	3 cut(s)	555, 579, 709
BfmI	CTRYAG	2 cut(s)	131, 507
BisI	GCNGC	6 cut(s)	9, 131, 134, 375, 510, 642
BlsI	GCNGC	6 cut(s)	10, 132, 135, 376, 511, 643
BmcAI	AGTACT	2 cut(s)	480, 499
Bme1390I	CCNGG	2 cut(s)	176, 188
Bme18I	GGWCC	3 cut(s)	21, 178, 590
BmgT120I	GGNCC	3 cut(s)	21, 178, 590
BmiI	GGNNCC	4 cut(s)	31, 162, 314, 592
BmrFI	CCNGG	2 cut(s)	176, 188
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpmI	CTGGAG	1 cut(s)	569
Bpu10I	CCTNAGC	2 cut(s)	80, 85
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	164, 204, 265
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 187, 526, 541
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	686
BseDI	CCNNGG	3 cut(s)	164, 204, 265
BseGI	GGATG	3 cut(s)	10, 67, 174
BseLI	CCNNNNNNNGG	4 cut(s)	97, 187, 526, 541
BseMII	CTCAG	2 cut(s)	71, 99
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	117, 145, 386, 521, 628
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	24, 187
BsiWI	CGTACG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	211, 576
BslI	CCNNNNNNNGG	4 cut(s)	97, 187, 526, 541
BsmFI	GGGAC	2 cut(s)	211, 576
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	298, 664, 683, 687
Bsp19I	CCATGG	1 cut(s)	204
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	72, 98
BspDI	ATCGAT	1 cut(s)	686
BspLI	GGNNCC	4 cut(s)	31, 162, 314, 592
BspMAI	CTGCAG	2 cut(s)	135, 511
BspPI	GGATC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	3 cut(s)	164, 204, 265
BssMI	GATC	4 cut(s)	298, 664, 683, 687
BssT1I	CCWWGG	2 cut(s)	164, 204
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	4 cut(s)	269, 529, 574, 679
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	139, 426
BstC8I	GCNNGC	2 cut(s)	47, 372
BstDEI	CTNAG	3 cut(s)	80, 85, 704
BstDSI	CCRYGG	2 cut(s)	204, 265
BstF5I	GGATG	3 cut(s)	10, 67, 174
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	301, 667, 686, 690
BstMBI	GATC	4 cut(s)	298, 664, 683, 687
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 365, 374, 426, 551, 638, 705
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	105, 374
BstSCI	CCNGG	2 cut(s)	174, 186
BstSFI	CTRYAG	2 cut(s)	131, 507
BstV1I	GCAGC	5 cut(s)	117, 145, 386, 521, 628
BstV2I	GAAGAC	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	90
BsuTUI	ATCGAT	1 cut(s)	686
BtgI	CCRYGG	2 cut(s)	204, 265
BtsCI	GGATG	3 cut(s)	10, 67, 174
BtsIMutI	CAGTG	2 cut(s)	545, 561
Cac8I	GCNNGC	2 cut(s)	47, 372
CaiI	CAGNNNCTG	1 cut(s)	547
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	21, 178, 590
ClaI	ATCGAT	1 cut(s)	686
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	4 cut(s)	161, 479, 498, 525
CviAII	CATG	6 cut(s)	102, 127, 205, 254, 371, 490
CviQI	GTAC	4 cut(s)	161, 479, 498, 525
DdeI	CTNAG	3 cut(s)	80, 85, 704
DpnI	GATC	4 cut(s)	300, 666, 685, 689
DpnII	GATC	4 cut(s)	298, 664, 683, 687
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	164, 204
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	3 cut(s)	21, 178, 590
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	164, 204
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	164, 204
FaeI	CATG	6 cut(s)	105, 130, 208, 257, 374, 493
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	2 cut(s)	211, 576
FatI	CATG	6 cut(s)	101, 126, 204, 253, 370, 489
FauNDI	CATATG	1 cut(s)	425
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	6 cut(s)	9, 131, 134, 375, 510, 642
FokI	GGATG	3 cut(s)	17, 74, 181
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	6 cut(s)	9, 131, 134, 375, 510, 642
FspBI	CTAG	3 cut(s)	555, 579, 709
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	6 cut(s)	9, 131, 134, 375, 510, 642
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	24, 187
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	105, 130, 208, 257, 374, 493
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	24, 187
HphI	GGTGA	2 cut(s)	167, 594
Hpy166II	GTNNAC	2 cut(s)	265, 272
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	2 cut(s)	265, 272
HpyAV	CCTTC	3 cut(s)	146, 326, 410
HpyCH4III	ACNGT	4 cut(s)	269, 529, 574, 679
HpyCH4V	TGCA	7 cut(s)	133, 142, 374, 489, 509, 615, 656
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 365, 374, 426, 551, 638, 705
HpyF3I	CTNAG	3 cut(s)	80, 85, 704
Hsp92II	CATG	6 cut(s)	105, 130, 208, 257, 374, 493
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	4 cut(s)	298, 664, 683, 687
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	5 cut(s)	117, 145, 386, 521, 628
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	3 cut(s)	555, 579, 709
MaeIII	GTNAC	3 cut(s)	227, 574, 600
MalI	GATC	4 cut(s)	300, 666, 685, 689
MboI	GATC	4 cut(s)	298, 664, 683, 687
MboII	GAAGA	5 cut(s)	131, 161, 416, 485, 523
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	137, 233, 484
MnlI	CCTC	8 cut(s)	12, 101, 151, 456, 459, 530, 544, 631
MseI	TTAA	3 cut(s)	308, 441, 483
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	2 cut(s)	24, 187
MspR9I	CCNGG	2 cut(s)	176, 188
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	7 cut(s)	139, 365, 374, 426, 551, 638, 705
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	4 cut(s)	298, 664, 683, 687
NlaIII	CATG	6 cut(s)	105, 130, 208, 257, 374, 493
NlaIV	GGNNCC	4 cut(s)	31, 162, 314, 592
NmuCI	GTSAC	1 cut(s)	600
NspI	RCATGY	2 cut(s)	105, 374
PaeI	GCATGC	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	90
Pfl23II	CGTACG	1 cut(s)	524
PkrI	GCNGC	6 cut(s)	10, 132, 135, 376, 511, 643
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspLI	CGTACG	1 cut(s)	524
PspN4I	GGNNCC	4 cut(s)	31, 162, 314, 592
PspPI	GGNCC	3 cut(s)	21, 178, 590
PstI	CTGCAG	2 cut(s)	135, 511
PstNI	CAGNNNCTG	1 cut(s)	547
RsaI	GTAC	4 cut(s)	162, 480, 499, 526
RsaNI	GTAC	4 cut(s)	161, 479, 498, 525
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	308, 441, 483
SatI	GCNGC	6 cut(s)	9, 131, 134, 375, 510, 642
Sau3AI	GATC	4 cut(s)	298, 664, 683, 687
Sau96I	GGNCC	3 cut(s)	21, 178, 590
ScaI	AGTACT	2 cut(s)	480, 499
ScrFI	CCNGG	2 cut(s)	176, 188
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	2 cut(s)	131, 507
SinI	GGWCC	3 cut(s)	21, 178, 590
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	578
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	3 cut(s)	137, 233, 484
SseBI	AGGCCT	1 cut(s)	90
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	3 cut(s)	555, 579, 709
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	174, 186
StyI	CCWWGG	2 cut(s)	164, 204
TaaI	ACNGT	4 cut(s)	269, 529, 574, 679
TaqI	TCGA	1 cut(s)	686
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	3 cut(s)	137, 233, 484
TatI	WGTACW	2 cut(s)	478, 497
Tru1I	TTAA	3 cut(s)	308, 441, 483
Tru9I	TTAA	3 cut(s)	308, 441, 483
TscAI	CASTG	2 cut(s)	552, 568
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	6 cut(s)	8, 130, 133, 374, 509, 641
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	3 cut(s)	115, 242, 480
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	552, 568
VpaK11BI	GGWCC	3 cut(s)	21, 178, 590
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	105, 374
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	3 cut(s)	555, 579, 709
ZrmI	AGTACT	2 cut(s)	480, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.