Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

18489121 .. 18491762

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCGGATTGGAGCGGGAGCGACCAGAACGATCGAGAAGCTTTCTTGGAGGCTTGACTCGAAGTTCGATTGTCGGTGCAAGGAGAAGGGTACCATATTCTTGAAGATGGATGTTGCTGGGAAGTCTAGTGGAGCCAAATATGAGTGCTTGCTTTTTGATTTGGATGATACTCTGTACCCCATGAGCTCTGGTCTCAACTTGGCCTGCCGGAAGAACATTGAAGAGTACATGCTGCAACACTTGCAAATTGAAGAAAGTGAGGTATCAAGGATGTGCCTGGAATTGTACAGAGAACATGGGACAACCATGGCCGGTCTAAAGGCTCTTGGTCACGAATTTGATGATGATGAGTTTCATGCATATGTCCATGGAAGACTACCCTATGATGCGTTGAAGCCTGATCTAGTGTTAAGAAACCTTCTCTTATCTATGCCACAGAGAAAAATAATCTTCACTAACGCTGACAAAGCACATGCAGCTGAAGTTCTCAGGAGGTTGTGCTTGGAAGATTATGACGATGTTATAGAGCATGCTCCAGAGGCTGCTGCCACTGATTGCACCAGAAATAATCTCAGTCCCAAGTCACCAATTCTGTGCAAACCCTCTGTTGAAGCAATTGAAGCTGCTATTCGTATAGCAAATGTTGACCCACAAAAAACTATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTTATTGTCGGGAGTTCAGAGCTAGTGCCTGGTGCAGATTATGTGCTGCGCAGCATACATAACATCCGAGAAGCAATACCTGAGATATGGGAAGGGGAAGAAGGGCAACAACTAGAGCAATTTATCCAGTCTACTGCAGTTGAAACAGTGATCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

293

Amino Acids

32.72

Weight (kDa)

5.2

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	48 - 237	3e-11	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	51 - 243	6.5e-07	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	770
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	2 cut(s)	4, 14
AclWI	GGATC	1 cut(s)	865
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	4 cut(s)	91, 176, 227, 287
AgsI	TTSAA	7 cut(s)	103, 221, 251, 394, 611, 620, 863
AjnI	CCWGG	2 cut(s)	276, 748
AluBI	AGCT	5 cut(s)	40, 186, 479, 623, 742
AluI	AGCT	5 cut(s)	40, 186, 479, 623, 742
Alw21I	GWGCWC	2 cut(s)	188, 682
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	201, 309
ApeKI	GCWGC	8 cut(s)	232, 476, 542, 545, 623, 704, 766, 771
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	771
AsuHPI	GGTGA	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	2 cut(s)	188, 682
BbvI	GCAGC	8 cut(s)	219, 488, 529, 532, 610, 716, 753, 783
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	278, 750
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	4 cut(s)	126, 404, 743, 833
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	8 cut(s)	233, 477, 543, 546, 624, 705, 767, 772
BlsI	GCNGC	8 cut(s)	234, 478, 544, 547, 625, 706, 768, 773
Bme1390I	CCNGG	2 cut(s)	278, 750
BmiI	GGNNCC	2 cut(s)	91, 133
BmrFI	CCNGG	2 cut(s)	278, 750
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	306, 367
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	278, 750
BseDI	CCNNGG	2 cut(s)	306, 367
BseGI	GGATG	4 cut(s)	115, 169, 276, 783
BseMII	CTCAG	3 cut(s)	502, 586, 792
BseNI	ACTGG	1 cut(s)	847
BseXI	GCAGC	8 cut(s)	219, 488, 529, 532, 610, 716, 753, 783
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	774
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	203, 311
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	188, 682
BsiSI	CCGG	2 cut(s)	208, 312
BslFI	GGGAC	2 cut(s)	313, 561
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	313, 561
BsnI	GGCC	2 cut(s)	203, 311
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	188, 682
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	30, 400, 870
Bsp19I	CCATGG	2 cut(s)	306, 367
BspACI	CCGC	2 cut(s)	4, 14
BspANI	GGCC	2 cut(s)	203, 311
BspCNI	CTCAG	3 cut(s)	501, 585, 793
BspLI	GGNNCC	2 cut(s)	91, 133
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	847
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	306, 367
BssMI	GATC	3 cut(s)	30, 400, 870
BssT1I	CCWWGG	2 cut(s)	306, 367
Bst2UI	CCWGG	2 cut(s)	278, 750
Bst4CI	ACNGT	3 cut(s)	677, 721, 868
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	149, 205, 531
BstDEI	CTNAG	3 cut(s)	488, 572, 801
BstDSI	CCRYGG	2 cut(s)	306, 367
BstF5I	GGATG	4 cut(s)	115, 169, 276, 783
BstHHI	GCGC	1 cut(s)	771
BstKTI	GATC	3 cut(s)	33, 403, 873
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	30, 400, 870
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	241, 467, 476, 539, 620
BstNI	CCWGG	2 cut(s)	278, 750
BstNSI	RCATGY	3 cut(s)	232, 476, 533
BstSCI	CCNGG	2 cut(s)	276, 748
BstSFI	CTRYAG	1 cut(s)	855
BstV1I	GCAGC	8 cut(s)	219, 488, 529, 532, 610, 716, 753, 783
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	203, 311
BtgI	CCRYGG	2 cut(s)	306, 367
BtsCI	GGATG	4 cut(s)	115, 169, 276, 783
BtsIMutI	CAGTG	3 cut(s)	549, 682, 873
Cac8I	GCNNGC	3 cut(s)	149, 205, 531
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	90, 175, 226, 286
CviAII	CATG	8 cut(s)	181, 229, 296, 307, 356, 368, 473, 530
CviQI	GTAC	4 cut(s)	90, 175, 226, 286
DdeI	CTNAG	3 cut(s)	488, 572, 801
DpnI	GATC	3 cut(s)	32, 402, 872
DpnII	GATC	3 cut(s)	30, 400, 870
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	306, 367
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	276, 748
EcoT14I	CCWWGG	2 cut(s)	306, 367
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	2 cut(s)	306, 367
FaeI	CATG	8 cut(s)	184, 232, 299, 310, 359, 371, 476, 533
FaqI	GGGAC	2 cut(s)	313, 561
FatI	CATG	8 cut(s)	180, 228, 295, 306, 355, 367, 472, 529
FauI	CCCGC	1 cut(s)	7
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	8 cut(s)	233, 477, 543, 546, 624, 705, 767, 772
FokI	GGATG	4 cut(s)	122, 176, 283, 770
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	8 cut(s)	233, 477, 543, 546, 624, 705, 767, 772
FspBI	CTAG	4 cut(s)	126, 404, 743, 833
FspI	TGCGCA	1 cut(s)	770
GlaI	GCGC	1 cut(s)	770
GluI	GCNGC	8 cut(s)	233, 477, 543, 546, 624, 705, 767, 772
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	203, 311
HapII	CCGG	2 cut(s)	208, 312
HhaI	GCGC	1 cut(s)	771
Hin1II	CATG	8 cut(s)	184, 232, 299, 310, 359, 371, 476, 533
Hin6I	GCGC	1 cut(s)	769
HinP1I	GCGC	1 cut(s)	769
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	208, 312
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	2 cut(s)	646, 852
Hpy188I	TCNGA	2 cut(s)	739, 788
Hpy188III	TCNNGA	6 cut(s)	34, 100, 332, 490, 536, 730
Hpy8I	GTNNAC	2 cut(s)	646, 852
HpyAV	CCTTC	5 cut(s)	79, 428, 694, 806, 815
HpyCH4III	ACNGT	3 cut(s)	677, 721, 868
HpyF10VI	GCNNNNNNNGC	5 cut(s)	241, 467, 476, 539, 620
HpyF3I	CTNAG	3 cut(s)	488, 572, 801
Hsp92II	CATG	8 cut(s)	184, 232, 299, 310, 359, 371, 476, 533
HspAI	GCGC	1 cut(s)	769
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	30, 400, 870
LmnI	GCTCC	4 cut(s)	11, 17, 131, 538
Lsp1109I	GCAGC	8 cut(s)	219, 488, 529, 532, 610, 716, 753, 783
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	4 cut(s)	126, 404, 743, 833
MaeIII	GTNAC	2 cut(s)	329, 582
MalI	GATC	3 cut(s)	32, 402, 872
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	30, 400, 870
MboII	GAAGA	8 cut(s)	115, 223, 233, 263, 384, 442, 518, 830
MfeI	CAATTG	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	188, 682
MluCI	AATT	6 cut(s)	246, 281, 335, 588, 615, 839
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	42, 253, 486, 532, 613
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	2 cut(s)	208, 312
MspR9I	CCNGG	2 cut(s)	278, 750
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	278, 750
MwoI	GCNNNNNNNGC	5 cut(s)	241, 467, 476, 539, 620
NcoI	CCATGG	2 cut(s)	306, 367
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	30, 400, 870
NlaIII	CATG	8 cut(s)	184, 232, 299, 310, 359, 371, 476, 533
NlaIV	GGNNCC	2 cut(s)	91, 133
NmuCI	GTSAC	2 cut(s)	329, 582
NsbI	TGCGCA	1 cut(s)	770
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	3 cut(s)	232, 476, 533
PaeI	GCATGC	1 cut(s)	533
PkrI	GCNGC	8 cut(s)	234, 478, 544, 547, 625, 706, 768, 773
Ple19I	CGATCG	1 cut(s)	33
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	276, 748
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	276, 748
PspN4I	GGNNCC	2 cut(s)	91, 133
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	542
PvuI	CGATCG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	4 cut(s)	91, 176, 227, 287
RsaNI	GTAC	4 cut(s)	90, 175, 226, 286
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	8 cut(s)	233, 477, 543, 546, 624, 705, 767, 772
Sau3AI	GATC	3 cut(s)	30, 400, 870
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	278, 750
SduI	GDGCHC	2 cut(s)	188, 682
SetI	ASST	9 cut(s)	42, 188, 264, 420, 481, 497, 625, 744, 802
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	855
SmiMI	CAYNNNNRTG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	6 cut(s)	246, 281, 335, 588, 615, 839
SsiI	CCGC	2 cut(s)	4, 14
SspMI	CTAG	4 cut(s)	126, 404, 743, 833
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	276, 748
StyI	CCWWGG	2 cut(s)	306, 367
TaaI	ACNGT	3 cut(s)	677, 721, 868
TaqI	TCGA	4 cut(s)	33, 59, 66, 682
TasI	AATT	6 cut(s)	246, 281, 335, 588, 615, 839
TatI	WGTACW	2 cut(s)	225, 285
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	3 cut(s)	556, 682, 873
TseFI	GTSAC	2 cut(s)	329, 582
TseI	GCWGC	8 cut(s)	232, 476, 542, 545, 623, 704, 766, 771
Tsp45I	GTSAC	2 cut(s)	329, 582
TspDTI	ATGAA	2 cut(s)	344, 704
TspRI	CASTG	3 cut(s)	556, 682, 873
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	3 cut(s)	232, 476, 533
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	4 cut(s)	126, 404, 743, 833
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.