Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Reverse (-)

97663 .. 100322

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G001100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCATACTGAAAACGATGACTCTAATCGGGCAGAGAAACAAGGTATATTCTTGAAGATGGATGATGTTGGGAGGTCCGTTGGAGCCAAATATGACTACTTGCTTTTTGATTTGGATGATACTCTATATCCCCTGAGCTCAGGTCTCAACTTGGCATGCCGCAAGAACATTGAAGAGTTCATGCTGCACCACTTGCAAATAGAAGAAAGTGAGGTACCAAGGATGTGCCTGGAATTGTACAGGGAATATGGGACAACCATGGCCGGTCTAAAGGCTCTTGGTTACGAATTTGACAACGATGAGTTTCATTCACACGTCCACGGCAGGCTACCCTACGATTCATTGAAGCACGATCTGGTGTTAAGGAACCTTCTGTTATCGATGCCCCAGAGAAAAATAATCTTCACTAATGCTGATAAGGCTCATGCGGCTCAAGTTCTCAACAGGCTGGGCTTGGAAGACTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAACCCTCATCACCTTGAACCAGTTGATTGCAGGACATCAGATGACCAAATGGTCCTCATCGAACGGACACCAGAGGGCAAAGCCAATTCACCAATTCTCTGCAAACCCTCTGTGGAAGCAATTGAAGCTGCCATTCGTATTGCAAATGTTGACCCGGAAAAAACTATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTCATTGTGGGAAGTTCAGTACTAGTGCCTGGTGCAGATCATGCATTAAGCAGCATCCACAACATCAAAGAAGCAATACCTGAGATATGGGAAGGGGAAGGGGGGCAACAACTAGAGCAATTTATACAGTCAACTGCTGTTGACACAGTGGTCCTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

294

Amino Acids

32.67

Weight (kDa)

4.92

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	545, 869
Acc65I	GGTACC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	2 cut(s)	160, 428
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	3 cut(s)	216, 239, 741
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	7 cut(s)	55, 173, 346, 470, 488, 512, 620
AhlI	ACTAGT	1 cut(s)	742
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	228, 748
AluBI	AGCT	2 cut(s)	138, 623
AluI	AGCT	2 cut(s)	138, 623
Alw21I	GWGCWC	2 cut(s)	140, 682
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	184, 623, 704, 771
ApoI	RAATTY	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	75, 547, 871
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	497, 576
AvaII	GGWCC	3 cut(s)	75, 547, 871
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	140, 682
BbvI	GCAGC	4 cut(s)	171, 610, 716, 783
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	230, 750
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	2 cut(s)	743, 833
BisI	GCNGC	6 cut(s)	160, 185, 429, 624, 705, 772
BlsI	GCNGC	6 cut(s)	161, 186, 430, 625, 706, 773
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	230, 650, 750
Bme18I	GGWCC	3 cut(s)	75, 547, 871
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	75, 547, 871
BmiI	GGNNCC	3 cut(s)	85, 216, 368
BmrFI	CCNGG	3 cut(s)	230, 650, 750
BmsI	GCATC	3 cut(s)	372, 483, 783
BpiI	GAAGAC	1 cut(s)	465
Bpu10I	CCTNAGC	2 cut(s)	134, 139
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	650
Bsa29I	ATCGAT	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	218, 258, 319
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	230, 750
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	218, 258, 319
BseGI	GGATG	4 cut(s)	67, 121, 228, 774
BseMII	CTCAG	3 cut(s)	125, 153, 792
BseNI	ACTGG	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	171, 610, 716, 783
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	2 cut(s)	170, 774
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	214
BshVI	ATCGAT	1 cut(s)	380
BsiHKAI	GWGCWC	2 cut(s)	140, 682
BsiSI	CCGG	2 cut(s)	264, 650
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	140, 682
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	352, 757
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	160, 428
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	3 cut(s)	126, 152, 793
BspDI	ATCGAT	1 cut(s)	380
BspLI	GGNNCC	3 cut(s)	85, 216, 368
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	218, 258, 319
BssMI	GATC	2 cut(s)	352, 757
BssT1I	CCWWGG	2 cut(s)	218, 258
Bst2UI	CCWGG	2 cut(s)	230, 750
Bst4CI	ACNGT	5 cut(s)	464, 677, 721, 849, 868
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	3 cut(s)	193, 480, 761
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	157, 326
BstDEI	CTNAG	3 cut(s)	134, 139, 801
BstDSI	CCRYGG	2 cut(s)	258, 319
BstF5I	GGATG	4 cut(s)	67, 121, 228, 774
BstKTI	GATC	2 cut(s)	355, 760
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	352, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 419, 428, 480, 620, 761
BstNI	CCWGG	2 cut(s)	230, 750
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	228, 648, 748
BstV1I	GCAGC	4 cut(s)	171, 610, 716, 783
BstV2I	GAAGAC	1 cut(s)	465
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	380
BtgI	CCRYGG	2 cut(s)	258, 319
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	67, 121, 228, 774
BtsIMutI	CAGTG	2 cut(s)	682, 873
Cac8I	GCNNGC	2 cut(s)	157, 326
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	75, 547, 871
ClaI	ATCGAT	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	215, 238, 740
CviAII	CATG	5 cut(s)	156, 181, 259, 425, 761
CviQI	GTAC	3 cut(s)	215, 238, 740
DdeI	CTNAG	3 cut(s)	134, 139, 801
DpnI	GATC	2 cut(s)	354, 759
DpnII	GATC	2 cut(s)	352, 757
DrdI	GACNNNNNNGTC	2 cut(s)	545, 869
DseDI	GACNNNNNNGTC	2 cut(s)	545, 869
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	218, 258
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	75, 547, 871
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	228, 748
EcoT14I	CCWWGG	2 cut(s)	218, 258
EcoT22I	ATGCAT	2 cut(s)	6, 766
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	218, 258
FaeI	CATG	5 cut(s)	159, 184, 262, 428, 764
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	5 cut(s)	155, 180, 258, 424, 760
FauNDI	CATATG	1 cut(s)	479
Fnu4HI	GCNGC	6 cut(s)	160, 185, 429, 624, 705, 772
FokI	GGATG	4 cut(s)	74, 128, 235, 761
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	6 cut(s)	160, 185, 429, 624, 705, 772
FspBI	CTAG	2 cut(s)	743, 833
GluI	GCNGC	6 cut(s)	160, 185, 429, 624, 705, 772
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	264, 650
Hin1II	CATG	5 cut(s)	159, 184, 262, 428, 764
HincII	GTYRAC	3 cut(s)	646, 852, 862
HindII	GTYRAC	3 cut(s)	646, 852, 862
HinfI	GANTC	2 cut(s)	20, 338
HpaII	CCGG	2 cut(s)	264, 650
HphI	GGTGA	2 cut(s)	497, 576
Hpy166II	GTNNAC	4 cut(s)	319, 646, 852, 862
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	4 cut(s)	319, 646, 852, 862
HpyAV	CCTTC	5 cut(s)	380, 464, 694, 806, 812
HpyCH4III	ACNGT	5 cut(s)	464, 677, 721, 849, 868
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	4, 187, 196, 525, 597, 638, 755, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 419, 428, 480, 620, 761
HpyF3I	CTNAG	3 cut(s)	134, 139, 801
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	159, 184, 262, 428, 764
KpnI	GGTACC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	352, 757
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	4 cut(s)	171, 610, 716, 783
LweI	GCATC	3 cut(s)	372, 483, 783
MaeI	CTAG	2 cut(s)	743, 833
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	354, 759
MboI	GATC	2 cut(s)	352, 757
MboII	GAAGA	5 cut(s)	67, 185, 215, 394, 470
MfeI	CAATTG	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	140, 682
MluCI	AATT	6 cut(s)	233, 287, 580, 588, 615, 839
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	66, 205, 510, 560, 562, 613
Mph1103I	ATGCAT	2 cut(s)	6, 766
MseI	TTAA	3 cut(s)	362, 495, 767
MspI	CCGG	2 cut(s)	264, 650
MspR9I	CCNGG	3 cut(s)	230, 650, 750
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	230, 750
MwoI	GCNNNNNNNGC	6 cut(s)	193, 419, 428, 480, 620, 761
NciI	CCSGG	1 cut(s)	650
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	2 cut(s)	352, 757
NlaIII	CATG	5 cut(s)	159, 184, 262, 428, 764
NlaIV	GGNNCC	3 cut(s)	85, 216, 368
NsiI	ATGCAT	2 cut(s)	6, 766
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	161, 186, 430, 625, 706, 773
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	228, 748
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	228, 748
PspN4I	GGNNCC	3 cut(s)	85, 216, 368
PspPI	GGNCC	3 cut(s)	75, 547, 871
RsaI	GTAC	3 cut(s)	216, 239, 741
RsaNI	GTAC	3 cut(s)	215, 238, 740
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	362, 495, 767
SatI	GCNGC	6 cut(s)	160, 185, 429, 624, 705, 772
Sau3AI	GATC	2 cut(s)	352, 757
Sau96I	GGNCC	3 cut(s)	75, 547, 871
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	230, 650, 750
SduI	GDGCHC	2 cut(s)	140, 682
SfaNI	GCATC	3 cut(s)	372, 483, 783
SinI	GGWCC	3 cut(s)	75, 547, 871
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	742
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	6 cut(s)	233, 287, 580, 588, 615, 839
SsiI	CCGC	2 cut(s)	160, 428
SspMI	CTAG	2 cut(s)	743, 833
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	228, 648, 748
StyI	CCWWGG	2 cut(s)	218, 258
TaaI	ACNGT	5 cut(s)	464, 677, 721, 849, 868
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	380, 555, 682
TasI	AATT	6 cut(s)	233, 287, 580, 588, 615, 839
TatI	WGTACW	2 cut(s)	237, 739
TauI	GCSGC	2 cut(s)	162, 431
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	3 cut(s)	362, 495, 767
Tru9I	TTAA	3 cut(s)	362, 495, 767
TscAI	CASTG	2 cut(s)	682, 873
TseI	GCWGC	4 cut(s)	184, 623, 704, 771
TspDTI	ATGAA	4 cut(s)	169, 296, 330, 704
TspGWI	ACGGA	2 cut(s)	67, 574
TspRI	CASTG	2 cut(s)	682, 873
VpaK11BI	GGWCC	3 cut(s)	75, 547, 871
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	2 cut(s)	743, 833
ZrmI	AGTACT	1 cut(s)	741
Zsp2I	ATGCAT	2 cut(s)	6, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.