Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

18802247 .. 18803951

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATGTTGCTGGGAAGTCTAGTGGAGCCAAATATGAGTGCTTGCTTTTTGATTTGGATGATACTCTGTACCCCATGAGCTCTGGTCTCAACTTGGCCTGCCGGAAGAACATTGAAGAGTACATGCTGCAACACTTGCAAATTGAAGAAAGTGAGGTACCAAGGATGTGCCTGGAATTGTACAGAGAACATGGAACAACCATGGCTGGTCTAAAGGCTCTTGGTCACGAATTTGATGATGATGAGTTTCATGCATATGTCCATGGAAGACTACCCTATGATGCGTTGAAGCCTGATCTAGTGTTAAGAAACCTTCTCTTATCTATGCCACAGAGAAAAATAATCTTCACTAACGCTGACAAAGCACATGCAGCTGAAGTTCTCAGCAGGTTGTGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTCGAAACTCTTAATCCTCCTCGTCTTCAACCAGTTGATTTCATTACTGCACTAGATGACGATGTTATAGAGCGTGCTCCGGAGGCTACTGCCACTGATTGTACCAGAAATAATCTCCGTCCCAAGTCACCAATTCTGTGCAAACCCTCTGTTGAAGCAATTGAAGCTGCTATTCGTATAGCAAATGTTGACCCACAAAAAACTATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTTATTGTCGGGAGTTCAGAGCTAGTGCCTGGTGCAGATTATGTGCTGCGTAGCATACATAACATCAGAGAAGCAATACCTGAGATATGGGAAGGGGAAGAAGGGCAACAACTAGAGCAATTTATCCAGTCTACTGCAGTTGAAACAGTGATCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

284

Amino Acids

31.51

Weight (kDa)

4.73

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	821
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	5 cut(s)	71, 122, 159, 182, 529
AgsI	TTSAA	8 cut(s)	116, 146, 289, 413, 455, 581, 590, 833
AjnI	CCWGG	2 cut(s)	171, 718
AluBI	AGCT	4 cut(s)	81, 374, 593, 712
AluI	AGCT	4 cut(s)	81, 374, 593, 712
Alw21I	GWGCWC	3 cut(s)	83, 505, 652
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	835
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	5 cut(s)	127, 371, 593, 674, 736
ApoI	RAATTY	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	546
AsuII	TTCGAA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	274, 443
Bbv12I	GWGCWC	3 cut(s)	83, 505, 652
BbvI	GCAGC	5 cut(s)	114, 383, 580, 686, 723
BciT130I	CCWGG	2 cut(s)	173, 720
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	5 cut(s)	21, 299, 479, 713, 803
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	128, 372, 594, 675, 737
BlsI	GCNGC	5 cut(s)	129, 373, 595, 676, 738
Bme1390I	CCNGG	2 cut(s)	173, 720
BmiI	GGNNCC	2 cut(s)	28, 159
BmrFI	CCNGG	2 cut(s)	173, 720
BmsI	GCATC	2 cut(s)	271, 426
BpiI	GAAGAC	2 cut(s)	274, 443
Bpu14I	TTCGAA	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	161, 201, 262
BsaWI	WCCGGW	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	458, 817
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	173, 720
BseDI	CCNNGG	3 cut(s)	161, 201, 262
BseGI	GGATG	3 cut(s)	10, 64, 171
BseMII	CTCAG	2 cut(s)	397, 762
BseNI	ACTGG	2 cut(s)	458, 817
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	5 cut(s)	114, 383, 580, 686, 723
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	2 cut(s)	459, 744
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	3 cut(s)	83, 505, 652
BsiSI	CCGG	2 cut(s)	103, 506
BslFI	GGGAC	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	83, 505, 652
Bsp13I	TCCGGA	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	295, 840
Bsp19I	CCATGG	2 cut(s)	201, 262
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	396, 763
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	28, 159
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	458, 817
BssECI	CCNNGG	3 cut(s)	161, 201, 262
BssMI	GATC	2 cut(s)	295, 840
BssT1I	CCWWGG	3 cut(s)	161, 201, 262
Bst2UI	CCWGG	2 cut(s)	173, 720
Bst4CI	ACNGT	3 cut(s)	647, 691, 838
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	3 cut(s)	136, 393, 423
BstAUI	TGTACA	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	44, 100, 501
BstDEI	CTNAG	2 cut(s)	383, 771
BstDSI	CCRYGG	2 cut(s)	201, 262
BstF5I	GGATG	3 cut(s)	10, 64, 171
BstKTI	GATC	2 cut(s)	298, 843
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	295, 840
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 590
BstNI	CCWGG	2 cut(s)	173, 720
BstNSI	RCATGY	2 cut(s)	127, 371
BstSCI	CCNGG	2 cut(s)	171, 718
BstSFI	CTRYAG	1 cut(s)	825
BstV1I	GCAGC	5 cut(s)	114, 383, 580, 686, 723
BstV2I	GAAGAC	2 cut(s)	274, 443
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	2 cut(s)	201, 262
BtsCI	GGATG	3 cut(s)	10, 64, 171
BtsIMutI	CAGTG	3 cut(s)	519, 652, 843
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	44, 100, 501
Csp6I	GTAC	5 cut(s)	70, 121, 158, 181, 528
CviAII	CATG	7 cut(s)	76, 124, 191, 202, 251, 263, 368
CviQI	GTAC	5 cut(s)	70, 121, 158, 181, 528
DdeI	CTNAG	2 cut(s)	383, 771
DpnI	GATC	2 cut(s)	297, 842
DpnII	GATC	2 cut(s)	295, 840
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	161, 201, 262
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	171, 718
EcoT14I	CCWWGG	3 cut(s)	161, 201, 262
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	3 cut(s)	161, 201, 262
FaeI	CATG	7 cut(s)	79, 127, 194, 205, 254, 266, 371
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	7 cut(s)	75, 123, 190, 201, 250, 262, 367
FauNDI	CATATG	2 cut(s)	256, 422
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	5 cut(s)	128, 372, 594, 675, 737
FokI	GGATG	3 cut(s)	17, 71, 178
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	128, 372, 594, 675, 737
FspBI	CTAG	5 cut(s)	21, 299, 479, 713, 803
GluI	GCNGC	5 cut(s)	128, 372, 594, 675, 737
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	103, 506
Hin1II	CATG	7 cut(s)	79, 127, 194, 205, 254, 266, 371
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	103, 506
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	2 cut(s)	616, 822
Hpy188I	TCNGA	2 cut(s)	709, 758
Hpy188III	TCNNGA	3 cut(s)	227, 506, 700
Hpy8I	GTNNAC	2 cut(s)	616, 822
HpyAV	CCTTC	5 cut(s)	323, 407, 664, 776, 785
HpyCH4III	ACNGT	3 cut(s)	647, 691, 838
HpyCH4V	TGCA	9 cut(s)	130, 139, 254, 371, 476, 567, 725, 827, 848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 590
HpyF3I	CTNAG	2 cut(s)	383, 771
Hsp92II	CATG	7 cut(s)	79, 127, 194, 205, 254, 266, 371
Kpn2I	TCCGGA	1 cut(s)	505
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	295, 840
LmnI	GCTCC	2 cut(s)	26, 508
Lsp1109I	GCAGC	5 cut(s)	114, 383, 580, 686, 723
LweI	GCATC	2 cut(s)	271, 426
MaeI	CTAG	5 cut(s)	21, 299, 479, 713, 803
MaeIII	GTNAC	2 cut(s)	224, 552
MalI	GATC	2 cut(s)	297, 842
MboI	GATC	2 cut(s)	295, 840
MboII	GAAGA	8 cut(s)	118, 128, 158, 279, 337, 413, 443, 800
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	83, 505, 652
MluCI	AATT	6 cut(s)	141, 176, 230, 558, 585, 809
MnlI	CCTC	5 cut(s)	148, 453, 456, 502, 583
Mph1103I	ATGCAT	1 cut(s)	256
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	2 cut(s)	305, 438
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	2 cut(s)	103, 506
MspR9I	CCNGG	2 cut(s)	173, 720
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	173, 720
MwoI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 590
NcoI	CCATGG	2 cut(s)	201, 262
NdeI	CATATG	2 cut(s)	256, 422
NdeII	GATC	2 cut(s)	295, 840
NlaIII	CATG	7 cut(s)	79, 127, 194, 205, 254, 266, 371
NlaIV	GGNNCC	2 cut(s)	28, 159
NmuCI	GTSAC	2 cut(s)	224, 552
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	2 cut(s)	127, 371
NspV	TTCGAA	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	129, 373, 595, 676, 738
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	171, 718
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	171, 718
PspN4I	GGNNCC	2 cut(s)	28, 159
PstI	CTGCAG	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	5 cut(s)	71, 122, 159, 182, 529
RsaNI	GTAC	5 cut(s)	70, 121, 158, 181, 528
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	305, 438
SatI	GCNGC	5 cut(s)	128, 372, 594, 675, 737
Sau3AI	GATC	2 cut(s)	295, 840
ScrFI	CCNGG	2 cut(s)	173, 720
SduI	GDGCHC	3 cut(s)	83, 505, 652
SetI	ASST	8 cut(s)	83, 159, 315, 376, 392, 595, 714, 772
SfaNI	GCATC	2 cut(s)	271, 426
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	6 cut(s)	141, 176, 230, 558, 585, 809
SspMI	CTAG	5 cut(s)	21, 299, 479, 713, 803
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	171, 718
StyI	CCWWGG	3 cut(s)	161, 201, 262
TaaI	ACNGT	3 cut(s)	647, 691, 838
TaqI	TCGA	2 cut(s)	429, 652
TasI	AATT	6 cut(s)	141, 176, 230, 558, 585, 809
TatI	WGTACW	2 cut(s)	120, 180
Tru1I	TTAA	2 cut(s)	305, 438
Tru9I	TTAA	2 cut(s)	305, 438
TscAI	CASTG	3 cut(s)	526, 652, 843
TseFI	GTSAC	2 cut(s)	224, 552
TseI	GCWGC	5 cut(s)	127, 371, 593, 674, 736
Tsp45I	GTSAC	2 cut(s)	224, 552
TspDTI	ATGAA	3 cut(s)	239, 457, 674
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	526, 652, 843
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	2 cut(s)	127, 371
XmiI	GTMKAC	1 cut(s)	821
XspI	CTAG	5 cut(s)	21, 299, 479, 713, 803
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.