Rmu_sc0004711.1_g000016

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004711.1
Physical Location & Seq
Forward (+)
64669 .. 69971
5303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004711.1_g000016.1.cds

Sequence Viewer

Length: 1260 bp
atggtagtcgtcgtgtacgtggtggtgaaagagaaatatgccttggcactaagtaatgtattggtaaatacgttattcgtcgtggggttgtgttcattgtggttagtaaaccgggacagagttcttgtccataccggaggcaactacctgggcgacagagtggtccgattattggagccatgtccaacatgcaacaaaagagagtttgtcgatggtacggtctcgctgcccacatgcaggtggtacgcgatcgatcaaatcctatgttggtgcagaaaaattccgttgaggagtttgactcaccaattaatgcggactggagcgggagctgacctgagaacaatcgagaagcttccctcgagcgttgacctggagtttgaccgttggttcgaggagaaggggggtaccatattcttgaagatggatgttgctgggaagtctagtggagcccaatatgagtgcttgctttttgatttggatgatactctgtaccccatgagctctggtctcaacttggcctgccggaagaacattgaagagtacatgctgcaaaacttgcaaattgaagaaagtgaggtatcaaggatgtgcctggaattgtacagagaacatgggacaaccatggccggtctaaaggctcttggtcacgaatttgatgatgatgagtttcatgcatatgtacatggaagactaccctatgatgcgttgaagcctgatctagtgttaagaaaccttctcttatctatgccacagagaaaaataatcttcactaacgctgacaaagcacatgcagctgaagttctcagcaggttgtgcttggaagattgttttgaaggcatcatatgctttgaaactcttaaccctcctcgtcttcaaccagttgatttcattactgtaccagatgatgatgttatagagcatgctccagaggctactgccactgatcgcaccggaaataagtcaccaattctgtgcaaaccctctgttgaagcaattgaagctgctattcgtatagcaaatgttgacccacaaaaaactattttctttgatgacagtgctcgaaacatagcaagtgggaaggcagcaggacttcatacagttattgtcgggagttcagagctagtgcctggtgcagattatgtgctgcgtagcatacataacatcagagaagcaatacctgagatatgggaaggggaagaagggcaacaactagagcaatttatccagtctactgcagttgaaacagtgatccttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

46.89

Weight (kDa)

5.0

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 228
AasI GACNNNNNNGTC 1 cut(s) 161
Acc36I ACCTGC 2 cut(s) 228, 798
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 1229
AccII CGCG 1 cut(s) 248
AciI CCGC 2 cut(s) 313, 323
AclWI GGATC 1 cut(s) 1243
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 2 cut(s) 279, 650
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 9 cut(s) 17, 217, 245, 406, 491, 542, 602, 681, 897
AfiI CCNNNNNNNGG 2 cut(s) 172, 237
AjnI CCWGG 4 cut(s) 147, 369, 591, 1126
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 6 cut(s) 329, 352, 501, 794, 1001, 1120
AluI AGCT 6 cut(s) 329, 352, 501, 794, 1001, 1120
Alw21I GWGCWC 2 cut(s) 503, 1060
Alw26I GTCTC 2 cut(s) 226, 512
AlwI GGATC 1 cut(s) 1243
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 2 cut(s) 516, 624
ApeKI GCWGC 6 cut(s) 226, 547, 791, 1001, 1082, 1144
ApoI RAATTY 2 cut(s) 279, 650
ArsI GACNNNNNNTTYG 4 cut(s) 359, 371, 391, 403
AseI ATTAAT 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 37, 293, 954
AvaI CYCGRG 1 cut(s) 358
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 2 cut(s) 451, 503
BbsI GAAGAC 2 cut(s) 694, 863
Bbv12I GWGCWC 2 cut(s) 503, 1060
BbvI GCAGC 6 cut(s) 213, 534, 803, 988, 1094, 1131
BccI CCATC 2 cut(s) 206, 415
BciT130I CCWGG 4 cut(s) 149, 371, 593, 1128
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 226, 512
BfaI CTAG 4 cut(s) 441, 719, 1121, 1211
BfmI CTRYAG 1 cut(s) 1233
BfuAI ACCTGC 2 cut(s) 228, 798
BisI GCNGC 6 cut(s) 227, 548, 792, 1002, 1083, 1145
BlsI GCNGC 6 cut(s) 228, 549, 793, 1003, 1084, 1146
Bme1390I CCNGG 5 cut(s) 113, 149, 371, 593, 1128
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 177, 406, 448
BmrFI CCNGG 5 cut(s) 113, 149, 371, 593, 1128
BmsI GCATC 2 cut(s) 691, 846
BpiI GAAGAC 2 cut(s) 694, 863
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 3 cut(s) 339, 392, 909
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 2 cut(s) 226, 512
BsaJI CCNNGG 3 cut(s) 42, 148, 621
BsaWI WCCGGW 2 cut(s) 134, 950
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 237
Bse118I RCCGGY 1 cut(s) 626
Bse1I ACTGG 3 cut(s) 322, 878, 1225
BseBI CCWGG 4 cut(s) 149, 371, 593, 1128
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 42, 148, 621
BseGI GGATG 3 cut(s) 430, 484, 591
BseLI CCNNNNNNNGG 2 cut(s) 172, 237
BseMII CTCAG 3 cut(s) 326, 817, 1170
BseNI ACTGG 3 cut(s) 322, 878, 1225
BseRI GAGGAG 3 cut(s) 304, 407, 855
BseXI GCAGC 6 cut(s) 213, 534, 803, 988, 1094, 1131
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 292, 1152
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 518, 626
BshNI GGYRCC 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 2 cut(s) 503, 1060
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 5 cut(s) 112, 135, 523, 627, 951
BslFI GGGAC 2 cut(s) 128, 628
BslI CCNNNNNNNGG 2 cut(s) 172, 237
BsmAI GTCTC 2 cut(s) 226, 512
BsmFI GGGAC 2 cut(s) 128, 628
BsnI GGCC 2 cut(s) 518, 626
Bso31I GGTCTC 2 cut(s) 226, 512
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 451, 503, 1060
Bsp1407I TGTACA 2 cut(s) 600, 679
Bsp143I GATC 5 cut(s) 249, 253, 715, 943, 1248
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 2 cut(s) 313, 323
BspANI GGCC 2 cut(s) 518, 626
BspCNI CTCAG 3 cut(s) 327, 816, 1171
BspDI ATCGAT 1 cut(s) 252
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 177, 406, 448
BspMAI CTGCAG 1 cut(s) 1237
BspMI ACCTGC 2 cut(s) 228, 798
BspPI GGATC 1 cut(s) 1243
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 2 cut(s) 226, 512
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 626
BsrGI TGTACA 2 cut(s) 600, 679
BsrI ACTGG 3 cut(s) 322, 878, 1225
BssAI RCCGGY 1 cut(s) 626
BssECI CCNNGG 3 cut(s) 42, 148, 621
BssMI GATC 5 cut(s) 249, 253, 715, 943, 1248
BssT1I CCWWGG 2 cut(s) 42, 621
Bst2UI CCWGG 4 cut(s) 149, 371, 593, 1128
Bst4CI ACNGT 6 cut(s) 220, 383, 895, 1055, 1099, 1246
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 3 cut(s) 556, 813, 843
BstAUI TGTACA 2 cut(s) 600, 679
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 464, 520, 921
BstDEI CTNAG 4 cut(s) 50, 335, 803, 1179
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 3 cut(s) 430, 484, 591
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 5 cut(s) 252, 256, 718, 946, 1251
BstMAI GTCTC 2 cut(s) 226, 512
BstMBI GATC 5 cut(s) 249, 253, 715, 943, 1248
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 7 cut(s) 556, 782, 791, 813, 843, 929, 998
BstNI CCWGG 4 cut(s) 149, 371, 593, 1128
BstNSI RCATGY 5 cut(s) 192, 237, 547, 791, 923
BstSCI CCNGG 5 cut(s) 111, 147, 369, 591, 1126
BstSFI CTRYAG 1 cut(s) 1233
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 6 cut(s) 213, 534, 803, 988, 1094, 1131
BstV2I GAAGAC 2 cut(s) 694, 863
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 2 cut(s) 518, 626
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 3 cut(s) 430, 484, 591
BtsIMutI CAGTG 3 cut(s) 939, 1060, 1251
BveI ACCTGC 2 cut(s) 228, 798
Cac8I GCNNGC 3 cut(s) 464, 520, 921
Cfr10I RCCGGY 1 cut(s) 626
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 9 cut(s) 16, 216, 244, 405, 490, 541, 601, 680, 896
CviQI GTAC 9 cut(s) 16, 216, 244, 405, 490, 541, 601, 680, 896
DdeI CTNAG 4 cut(s) 50, 335, 803, 1179
DpnI GATC 5 cut(s) 251, 255, 717, 945, 1250
DpnII GATC 5 cut(s) 249, 253, 715, 943, 1248
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 42, 621
Eco24I GRGCYC 2 cut(s) 451, 503
Eco31I GGTCTC 2 cut(s) 226, 512
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 501
EcoRII CCWGG 4 cut(s) 147, 369, 591, 1126
EcoT14I CCWWGG 2 cut(s) 42, 621
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 451, 503
ErhI CCWWGG 2 cut(s) 42, 621
FaqI GGGAC 2 cut(s) 128, 628
FauI CCCGC 1 cut(s) 316
FauNDI CATATG 2 cut(s) 676, 842
FblI GTMKAC 1 cut(s) 1229
Fnu4HI GCNGC 6 cut(s) 227, 548, 792, 1002, 1083, 1145
FokI GGATG 3 cut(s) 437, 491, 598
FriOI GRGCYC 2 cut(s) 451, 503
Fsp4HI GCNGC 6 cut(s) 227, 548, 792, 1002, 1083, 1145
FspBI CTAG 4 cut(s) 441, 719, 1121, 1211
GluI GCNGC 6 cut(s) 227, 548, 792, 1002, 1083, 1145
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 3 cut(s) 339, 392, 909
HaeIII GGCC 2 cut(s) 518, 626
HapII CCGG 5 cut(s) 112, 135, 523, 627, 951
HincII GTYRAC 2 cut(s) 367, 1024
HindII GTYRAC 2 cut(s) 367, 1024
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 298
HpaII CCGG 5 cut(s) 112, 135, 523, 627, 951
HphI GGTGA 3 cut(s) 37, 293, 954
Hpy166II GTNNAC 5 cut(s) 16, 109, 367, 1024, 1230
Hpy188I TCNGA 3 cut(s) 167, 1117, 1166
Hpy188III TCNNGA 5 cut(s) 346, 415, 647, 926, 1108
Hpy8I GTNNAC 5 cut(s) 16, 109, 367, 1024, 1230
Hpy99I CGWCG 2 cut(s) 14, 83
HpyAV CCTTC 6 cut(s) 391, 743, 827, 1072, 1184, 1193
HpyCH4III ACNGT 6 cut(s) 220, 383, 895, 1055, 1099, 1246
HpyCH4IV ACGT 2 cut(s) 18, 71
HpyF10VI GCNNNNNNNGC 7 cut(s) 556, 782, 791, 813, 843, 929, 998
HpyF3I CTNAG 4 cut(s) 50, 335, 803, 1179
HpySE526I ACGT 2 cut(s) 18, 71
KpnI GGTACC 1 cut(s) 408
Kzo9I GATC 5 cut(s) 249, 253, 715, 943, 1248
LmnI GCTCC 5 cut(s) 175, 320, 326, 446, 928
Lsp1109I GCAGC 6 cut(s) 213, 534, 803, 988, 1094, 1131
LweI GCATC 2 cut(s) 691, 846
MaeI CTAG 4 cut(s) 441, 719, 1121, 1211
MaeII ACGT 2 cut(s) 18, 71
MaeIII GTNAC 2 cut(s) 644, 960
MalI GATC 5 cut(s) 251, 255, 717, 945, 1250
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 249, 253, 715, 943, 1248
MboII GAAGA 9 cut(s) 430, 538, 548, 578, 699, 757, 833, 863, 1208
MfeI CAATTG 1 cut(s) 993
MhlI GDGCHC 3 cut(s) 451, 503, 1060
MluCI AATT 8 cut(s) 279, 305, 561, 596, 650, 966, 993, 1217
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 9 cut(s) 131, 282, 367, 385, 568, 873, 876, 922, 991
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 3 cut(s) 308, 725, 858
MslI CAYNNNNRTG 2 cut(s) 238, 675
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 5 cut(s) 112, 135, 523, 627, 951
MspR9I CCNGG 5 cut(s) 113, 149, 371, 593, 1128
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 4 cut(s) 149, 371, 593, 1128
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 7 cut(s) 556, 782, 791, 813, 843, 929, 998
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 621
NdeI CATATG 2 cut(s) 676, 842
NdeII GATC 5 cut(s) 249, 253, 715, 943, 1248
NlaIV GGNNCC 3 cut(s) 177, 406, 448
NmuCI GTSAC 2 cut(s) 644, 960
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 5 cut(s) 192, 237, 547, 791, 923
PaeI GCATGC 1 cut(s) 923
PaeR7I CTCGAG 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PkrI GCNGC 6 cut(s) 228, 549, 793, 1003, 1084, 1146
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 503
Psp6I CCWGG 4 cut(s) 147, 369, 591, 1126
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 4 cut(s) 147, 369, 591, 1126
PspN4I GGNNCC 3 cut(s) 177, 406, 448
PspPI GGNCC 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 358
PstI CTGCAG 1 cut(s) 1237
PvuI CGATCG 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 9 cut(s) 17, 217, 245, 406, 491, 542, 602, 681, 897
RsaNI GTAC 9 cut(s) 16, 216, 244, 405, 490, 541, 601, 680, 896
RseI CAYNNNNRTG 2 cut(s) 238, 675
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 3 cut(s) 308, 725, 858
SatI GCNGC 6 cut(s) 227, 548, 792, 1002, 1083, 1145
Sau3AI GATC 5 cut(s) 249, 253, 715, 943, 1248
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 5 cut(s) 113, 149, 371, 593, 1128
SduI GDGCHC 3 cut(s) 451, 503, 1060
SfaNI GCATC 2 cut(s) 691, 846
SfcI CTRYAG 1 cut(s) 1233
Sfr274I CTCGAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 358
SmiMI CAYNNNNRTG 2 cut(s) 238, 675
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
SphI GCATGC 1 cut(s) 923
Sse9I AATT 8 cut(s) 279, 305, 561, 596, 650, 966, 993, 1217
SsiI CCGC 2 cut(s) 313, 323
SspMI CTAG 4 cut(s) 441, 719, 1121, 1211
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 5 cut(s) 111, 147, 369, 591, 1126
StyI CCWWGG 2 cut(s) 42, 621
TaaI ACNGT 6 cut(s) 220, 383, 895, 1055, 1099, 1246
TaiI ACGT 2 cut(s) 21, 74
TaqI TCGA 6 cut(s) 210, 252, 345, 359, 390, 1060
TasI AATT 8 cut(s) 279, 305, 561, 596, 650, 966, 993, 1217
TatI WGTACW 3 cut(s) 540, 600, 679
Tru1I TTAA 3 cut(s) 308, 725, 858
Tru9I TTAA 3 cut(s) 308, 725, 858
TscAI CASTG 3 cut(s) 946, 1060, 1251
TseFI GTSAC 2 cut(s) 644, 960
TseI GCWGC 6 cut(s) 226, 547, 791, 1001, 1082, 1144
Tsp45I GTSAC 2 cut(s) 644, 960
TspDTI ATGAA 4 cut(s) 84, 659, 877, 1082
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 946, 1060, 1251
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 2 cut(s) 279, 650
XceI RCATGY 5 cut(s) 192, 237, 547, 791, 923
XhoI CTCGAG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 1229
XspI CTAG 4 cut(s) 441, 719, 1121, 1211
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.