Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Reverse (-)

31471141 .. 31473880

Gene Structure 2740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG302600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATGTTGCTGGGAAGTCTAGTGGAGCCCAATATGAGTGCTTGCTTTTTGATTTGGATGATACTCTGTACCCCATGAGCTCTGGTCTCAACTTGGCCTGCCGGAAGAACATTGAAGAGTACATGCTGCAACACTTGCAAATTGAAGAAAGTGAGGTATCAAGGATGTGCCTGGAATTGTACAGAGAACATGGGACAACCATGGCCGGTCTAAAGGCTCTTGGTCACGAATTTGATGATGATGAGTTTCATGCATATGTACATGGAAGACTACCCTATGATGCGTTGAAGCCTGATCTAGTGTTAAGAAACCTTCTCTTATGTATGCCACAGAGAAAAATAATCTTCACTAACGCTGACAAAGCACATGCAGCTGAAGTTCTCAGCAGGTTGTGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAACCCTCCTCGTCTTCAACCAGTTGATTTCATTACTGTACCAGATGATGATGTTATAGAGCATGCTCCAGAGGCTACTGCCACTGATCGCACCGGAAATAAGTCACCAATTCTGTGCAAACCCTCTGTTGGAGCAATTGAAGCTGCTATTCGTATAGCAAATGTTGACCCACAAAAAACTATTTTCTTTGATGACAGTGCTCGAAACATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTTATTGTAAGAGCTGTGCAACTAAACAAACTACTACAAATAAAGGAACCATTTAAAAGGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

248

Amino Acids

27.71

Weight (kDa)

5.28

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	5 cut(s)	71, 122, 182, 261, 477
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	7 cut(s)	116, 146, 289, 413, 431, 455, 578
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	4 cut(s)	81, 374, 581, 692
AluI	AGCT	4 cut(s)	81, 374, 581, 692
Alw21I	GWGCWC	2 cut(s)	83, 640
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	96, 204
ApeKI	GCWGC	4 cut(s)	127, 371, 581, 662
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	534
BanII	GRGCYC	2 cut(s)	31, 83
BbsI	GAAGAC	2 cut(s)	274, 443
Bbv12I	GWGCWC	2 cut(s)	83, 640
BbvI	GCAGC	4 cut(s)	114, 383, 568, 674
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	21, 299
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	128, 372, 582, 663
BlsI	GCNGC	4 cut(s)	129, 373, 583, 664
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	28, 726
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	271, 426
BpiI	GAAGAC	2 cut(s)	274, 443
BpmI	CTGGAG	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	10, 64, 171
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	4 cut(s)	114, 383, 568, 674
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	2 cut(s)	98, 206
BsiHKAI	GWGCWC	2 cut(s)	83, 640
BsiSI	CCGG	3 cut(s)	103, 207, 531
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	98, 206
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	31, 83, 640
Bsp1407I	TGTACA	2 cut(s)	180, 259
Bsp143I	GATC	2 cut(s)	295, 523
Bsp19I	CCATGG	1 cut(s)	201
BspANI	GGCC	2 cut(s)	98, 206
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	28, 726
BspMI	ACCTGC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	2 cut(s)	180, 259
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	295, 523
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	475, 635, 679
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	3 cut(s)	136, 393, 423
BstAUI	TGTACA	2 cut(s)	180, 259
BstC8I	GCNNGC	3 cut(s)	44, 100, 501
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	10, 64, 171
BstKTI	GATC	2 cut(s)	298, 526
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	295, 523
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 578
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	3 cut(s)	127, 371, 503
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	114, 383, 568, 674
BstV2I	GAAGAC	2 cut(s)	274, 443
BsuRI	GGCC	2 cut(s)	98, 206
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	10, 64, 171
BtsIMutI	CAGTG	2 cut(s)	519, 640
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	44, 100, 501
Cfr10I	RCCGGY	1 cut(s)	206
Csp6I	GTAC	5 cut(s)	70, 121, 181, 260, 476
CviAII	CATG	8 cut(s)	76, 124, 191, 202, 251, 263, 368, 500
CviQI	GTAC	5 cut(s)	70, 121, 181, 260, 476
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	297, 525
DpnII	GATC	2 cut(s)	295, 523
DraI	TTTAAA	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	31, 83
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	31, 83
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	8 cut(s)	79, 127, 194, 205, 254, 266, 371, 503
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	8 cut(s)	75, 123, 190, 201, 250, 262, 367, 499
FauNDI	CATATG	2 cut(s)	256, 422
Fnu4HI	GCNGC	4 cut(s)	128, 372, 582, 663
FokI	GGATG	3 cut(s)	17, 71, 178
FriOI	GRGCYC	2 cut(s)	31, 83
Fsp4HI	GCNGC	4 cut(s)	128, 372, 582, 663
FspBI	CTAG	2 cut(s)	21, 299
GluI	GCNGC	4 cut(s)	128, 372, 582, 663
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	98, 206
HapII	CCGG	3 cut(s)	103, 207, 531
Hin1II	CATG	8 cut(s)	79, 127, 194, 205, 254, 266, 371, 503
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HpaII	CCGG	3 cut(s)	103, 207, 531
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188III	TCNNGA	2 cut(s)	227, 506
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	3 cut(s)	323, 407, 652
HpyCH4III	ACNGT	3 cut(s)	475, 635, 679
HpyCH4V	TGCA	6 cut(s)	130, 139, 254, 371, 555, 697
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 578
HpyF3I	CTNAG	1 cut(s)	383
Hsp92II	CATG	8 cut(s)	79, 127, 194, 205, 254, 266, 371, 503
Kzo9I	GATC	2 cut(s)	295, 523
LmnI	GCTCC	3 cut(s)	26, 508, 569
Lsp1109I	GCAGC	4 cut(s)	114, 383, 568, 674
LweI	GCATC	2 cut(s)	271, 426
MaeI	CTAG	2 cut(s)	21, 299
MaeIII	GTNAC	2 cut(s)	224, 540
MalI	GATC	2 cut(s)	297, 525
MboI	GATC	2 cut(s)	295, 523
MboII	GAAGA	7 cut(s)	118, 128, 158, 279, 337, 413, 443
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	3 cut(s)	31, 83, 640
MluCI	AATT	5 cut(s)	141, 176, 230, 546, 573
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	5 cut(s)	148, 453, 456, 502, 571
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	3 cut(s)	305, 438, 732
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	103, 207, 531
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	136, 362, 371, 393, 423, 509, 578
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	2 cut(s)	256, 422
NdeII	GATC	2 cut(s)	295, 523
NlaIII	CATG	8 cut(s)	79, 127, 194, 205, 254, 266, 371, 503
NlaIV	GGNNCC	2 cut(s)	28, 726
NmuCI	GTSAC	2 cut(s)	224, 540
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	3 cut(s)	127, 371, 503
PaeI	GCATGC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	129, 373, 583, 664
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	28, 726
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	5 cut(s)	71, 122, 182, 261, 477
RsaNI	GTAC	5 cut(s)	70, 121, 181, 260, 476
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	305, 438, 732
SatI	GCNGC	4 cut(s)	128, 372, 582, 663
Sau3AI	GATC	2 cut(s)	295, 523
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	31, 83, 640
SetI	ASST	7 cut(s)	83, 159, 315, 376, 392, 583, 694
SfaNI	GCATC	2 cut(s)	271, 426
SmiMI	CAYNNNNRTG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	5 cut(s)	141, 176, 230, 546, 573
SspMI	CTAG	2 cut(s)	21, 299
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	475, 635, 679
TaqI	TCGA	1 cut(s)	640
TasI	AATT	5 cut(s)	141, 176, 230, 546, 573
TatI	WGTACW	3 cut(s)	120, 180, 259
Tru1I	TTAA	3 cut(s)	305, 438, 732
Tru9I	TTAA	3 cut(s)	305, 438, 732
TscAI	CASTG	2 cut(s)	526, 640
TseFI	GTSAC	2 cut(s)	224, 540
TseI	GCWGC	4 cut(s)	127, 371, 581, 662
Tsp45I	GTSAC	2 cut(s)	224, 540
TspDTI	ATGAA	3 cut(s)	239, 457, 662
TspRI	CASTG	2 cut(s)	526, 640
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	3 cut(s)	127, 371, 503
XspI	CTAG	2 cut(s)	21, 299
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.