Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Reverse (-)

17973358 .. 17975909

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATGTTGCTGGGAAGTCTAGCGGTGCCAAATATGAGTACTTGCTTTTTGATTTAGATGATACTCTGTACCCCATGAGCTCTGGTCTCAACTCAGCCTGCCGGAAGAATATTGAAGAGTACATGCTGCAACACTTGGATATTGAAGAAAGCGAGGTGCCAAGGATCTGCCTGGAATTGTACAGAGAACATGGGACTACCATGGCCGGTCTAAAGGCTCTTGGTCATGAATTTGATGATGATGAGTTTCATGCATATGTCCATGGAAGACTGCCTTATGATGCATTGAAGCCTGACCTAGTGCTGAGAAACCTTCTCTTATCTATGCCACAGAGAAAAATAATCTTCACTAACGCTGACAAAGCACATGCAGCTGAAGTTCGCAGCAGGTTGTGCTTGGAAGATTGTTTTGAAGGCATTATATGCTTCGAAACACTTAACCCTCCTCATCCTCAACCGGTTGATTTCATTACAGCACCAGATGATTGCACTGGAAATAATCTGAATTCCAAGTCACCTATTCTATGCAAACCCTCTGTTGAAGCAATTGAAGTTGCCATACGTATTGCAAATGTTGACCCACAAAAAACTCTTTTCTTTGATGACAGTGCTCGAAATATAGCAAGTGGGAAGGCAGCAGGACTTCATACAGTTATTGTTGGGAGTTCAGAGCTAGTGCCTGGTGCAGATTATGTGCTGCGTAGCATACATAACATCAGAGAAGCAATACCTGAGATATGGGAAGGGGAAGAAGGGCAACAACTAGAGCAATTCATCCAGTCTACTGCAGTTGAAACAGTGGTCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

271

Amino Acids

30.0

Weight (kDa)

4.74

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	26, 157
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	230, 505
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	4 cut(s)	41, 71, 122, 182
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	7 cut(s)	116, 146, 289, 413, 542, 551, 794
AjnI	CCWGG	2 cut(s)	171, 679
AluBI	AGCT	3 cut(s)	81, 374, 673
AluI	AGCT	3 cut(s)	81, 374, 673
Alw21I	GWGCWC	2 cut(s)	83, 613
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	5 cut(s)	127, 371, 384, 635, 697
ApoI	RAATTY	2 cut(s)	230, 505
AsiGI	ACCGGT	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	802
AsuHPI	GGTGA	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	802
BanI	GGYRCC	2 cut(s)	26, 157
BanII	GRGCYC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	2 cut(s)	83, 613
BbvI	GCAGC	5 cut(s)	114, 383, 396, 647, 684
BciT130I	CCWGG	2 cut(s)	173, 681
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	4 cut(s)	21, 299, 674, 764
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	128, 372, 385, 636, 698
BlsI	GCNGC	5 cut(s)	129, 373, 386, 637, 699
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	2 cut(s)	173, 681
Bme18I	GGWCC	1 cut(s)	802
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	2 cut(s)	28, 159
BmrFI	CCNGG	2 cut(s)	173, 681
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	161, 201, 262
BsaWI	WCCGGW	1 cut(s)	457
Bse118I	RCCGGY	2 cut(s)	206, 457
Bse1I	ACTGG	2 cut(s)	496, 778
BseBI	CCWGG	2 cut(s)	173, 681
BseDI	CCNNGG	3 cut(s)	161, 201, 262
BseGI	GGATG	3 cut(s)	10, 448, 774
BseMII	CTCAG	3 cut(s)	108, 296, 723
BseNI	ACTGG	2 cut(s)	496, 778
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	5 cut(s)	114, 383, 396, 647, 684
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	2 cut(s)	26, 157
BshTI	ACCGGT	1 cut(s)	457
BsiHKAI	GWGCWC	2 cut(s)	83, 613
BsiSI	CCGG	3 cut(s)	103, 207, 458
BslFI	GGGAC	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	83, 613
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	2 cut(s)	201, 262
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	3 cut(s)	107, 297, 724
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	28, 159
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	2 cut(s)	26, 157
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	206, 457
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	496, 778
BssAI	RCCGGY	2 cut(s)	206, 457
BssECI	CCNNGG	3 cut(s)	161, 201, 262
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	161, 201, 262
Bst2UI	CCWGG	2 cut(s)	173, 681
Bst4CI	ACNGT	3 cut(s)	608, 652, 799
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	393, 423
BstAUI	TGTACA	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	94, 305, 732
BstDSI	CCRYGG	2 cut(s)	201, 262
BstF5I	GGATG	3 cut(s)	10, 448, 774
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 371, 393, 423
BstNI	CCWGG	2 cut(s)	173, 681
BstNSI	RCATGY	2 cut(s)	127, 371
BstSCI	CCNGG	2 cut(s)	171, 679
BstSFI	CTRYAG	1 cut(s)	786
BstSNI	TACGTA	1 cut(s)	563
BstV1I	GCAGC	5 cut(s)	114, 383, 396, 647, 684
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	2 cut(s)	201, 262
BtsCI	GGATG	3 cut(s)	10, 448, 774
BtsIMutI	CAGTG	3 cut(s)	489, 613, 804
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	206, 457
Cfr13I	GGNCC	1 cut(s)	802
Csp6I	GTAC	4 cut(s)	40, 70, 121, 181
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	8 cut(s)	76, 124, 191, 202, 227, 251, 263, 368
CviJI	RGCY	7 cut(s)	81, 98, 206, 218, 292, 374, 673
CviKI_1	RGCY	7 cut(s)	81, 98, 206, 218, 292, 374, 673
CviQI	GTAC	4 cut(s)	40, 70, 121, 181
DdeI	CTNAG	3 cut(s)	94, 305, 732
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	81
Eco105I	TACGTA	1 cut(s)	563
Eco130I	CCWWGG	3 cut(s)	161, 201, 262
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	171, 679
EcoT14I	CCWWGG	3 cut(s)	161, 201, 262
EcoT22I	ATGCAT	2 cut(s)	256, 286
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	3 cut(s)	161, 201, 262
FaeI	CATG	8 cut(s)	79, 127, 194, 205, 230, 254, 266, 371
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	8 cut(s)	75, 123, 190, 201, 226, 250, 262, 367
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	5 cut(s)	128, 372, 385, 636, 698
FokI	GGATG	3 cut(s)	17, 435, 761
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	128, 372, 385, 636, 698
FspBI	CTAG	4 cut(s)	21, 299, 674, 764
GluI	GCNGC	5 cut(s)	128, 372, 385, 636, 698
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	3 cut(s)	103, 207, 458
Hin1II	CATG	8 cut(s)	79, 127, 194, 205, 230, 254, 266, 371
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaII	CCGG	3 cut(s)	103, 207, 458
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	2 cut(s)	577, 783
Hpy188I	TCNGA	3 cut(s)	504, 670, 719
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	577, 783
HpyAV	CCTTC	5 cut(s)	323, 407, 625, 737, 746
HpyCH4III	ACNGT	3 cut(s)	608, 652, 799
HpyCH4IV	ACGT	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 371, 393, 423
HpyF3I	CTNAG	3 cut(s)	94, 305, 732
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	8 cut(s)	79, 127, 194, 205, 230, 254, 266, 371
Kzo9I	GATC	1 cut(s)	165
Lsp1109I	GCAGC	5 cut(s)	114, 383, 396, 647, 684
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	4 cut(s)	21, 299, 674, 764
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	7 cut(s)	118, 128, 158, 279, 337, 413, 761
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	83, 613
MluCI	AATT	5 cut(s)	176, 230, 505, 546, 770
MnlI	CCTC	5 cut(s)	148, 453, 456, 462, 544
Mph1103I	ATGCAT	2 cut(s)	256, 286
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	103, 207, 458
MspR9I	CCNGG	2 cut(s)	173, 681
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	173, 681
MwoI	GCNNNNNNNGC	4 cut(s)	362, 371, 393, 423
NcoI	CCATGG	2 cut(s)	201, 262
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	8 cut(s)	79, 127, 194, 205, 230, 254, 266, 371
NlaIV	GGNNCC	2 cut(s)	28, 159
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	2 cut(s)	256, 286
NspI	RCATGY	2 cut(s)	127, 371
NspV	TTCGAA	1 cut(s)	429
PagI	TCATGA	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	5 cut(s)	129, 373, 386, 637, 699
Ppu21I	YACGTR	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	171, 679
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	171, 679
PspN4I	GGNNCC	2 cut(s)	28, 159
PspPI	GGNCC	1 cut(s)	802
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	4 cut(s)	41, 71, 122, 182
RsaNI	GTAC	4 cut(s)	40, 70, 121, 181
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	128, 372, 385, 636, 698
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	802
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	173, 681
SduI	GDGCHC	2 cut(s)	83, 613
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	786
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	255
SnaBI	TACGTA	1 cut(s)	563
Sse9I	AATT	5 cut(s)	176, 230, 505, 546, 770
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	4 cut(s)	21, 299, 674, 764
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	171, 679
StyI	CCWWGG	3 cut(s)	161, 201, 262
TaaI	ACNGT	3 cut(s)	608, 652, 799
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	2 cut(s)	429, 613
TasI	AATT	5 cut(s)	176, 230, 505, 546, 770
TatI	WGTACW	3 cut(s)	39, 120, 180
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	3 cut(s)	496, 613, 804
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	5 cut(s)	127, 371, 384, 635, 697
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	5 cut(s)	239, 243, 457, 635, 763
TspRI	CASTG	3 cut(s)	496, 613, 804
VpaK11BI	GGWCC	1 cut(s)	802
XapI	RAATTY	2 cut(s)	230, 505
XceI	RCATGY	2 cut(s)	127, 371
XmiI	GTMKAC	1 cut(s)	782
XspI	CTAG	4 cut(s)	21, 299, 674, 764
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	2 cut(s)	256, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.