Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001272.1

Orthogroup ID

OG0010391

Physical Location & Seq

Genomic Coordinates Forward (+)

54901 .. 60047

Gene Structure 5147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001272.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgcggactggagcgggagctgacctgagaacaatcgagaaggttccctcgagtgttgacctggagtttgaccgttggctcgaggagaaggggggtaccatattcttgaagatggatgttgctgggaagtctagtggagcccaatatgagtgcttgctttttgatttggatgatactctgtaccccatgagctctggtctcaacttggcctgccggaagaacattgaagagtacatgctgcaaaacttgcaaattgaagaaagtgaggtatcaaggatgtgcctggaattgtacagagaacatgggacaaccatggccggtctaaaggctcttggtcacgaatttgatgatgatgagtttcatgcatatgtacatggaagactaccctatgatgcgttgaagcctgatctagtgttaagaaaccttctcttatctatgccacagagaaaaataatcttcactaacgctgacaaagcacatgcagctgaagttctcagcaggttgtgcttggaagattgttttgaaggcatcatatgctttgaaactcttaaccctcctcgtcttcgaccagttgatttcattactgtaccagatgatgatgttatagagcatgctccagaggctactgccactgatcgcaccggaaataagtcaccaattctgtgcaaaccctctgttgaagcaattgaagctgctattcgtatagcaaatgttgacccacaaaaaactattttctttgatgacagtgctcgaaacatagcaagtgggaaggcagcaggacttcatacagttattgtcgggagttcagagctagtgcctggtgcagattatgtgctgcgtagcatacataacatcagagaagcaatacctgagatatgggaaggggaagaagggcaacaactagagcaatttatccagtctactgcagttgaaacagtgatccttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

316

Amino Acids

35.12

Weight (kDa)

4.69

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62040
fragaria_vesca	FvH4_1g26080 FvH4_1g26080
malus_domestica	MD09G1291700.v1.1
prunus_persica	Prupe.3G001100_v2.0.a1 Prupe.3G001100_v2.0.a1
pyrus_communis	pycom09g19960
rosa_chinensis	RchiOBHm_Chr3g0485571
rosa_laevigata	RLG00000023143
rosa_multiflora	Rmu_sc0001272.1_g000011 Rmu_sc0004711.1_g000016 Rmu_sc0011240.1_g000009
rosa_roxburghii	Rroxscaffold_6G00396610 Rroxscaffold_6G00396910
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268500 Rh3BG304300 Rh3CG302600 Rh3DG299200
rosa_wichuraiana	Rw3G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	920
AciI	CCGC	2 cut(s)	4, 14
AclWI	GGATC	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	6 cut(s)	97, 182, 233, 293, 372, 588
AgsI	TTSAA	9 cut(s)	109, 227, 257, 400, 524, 542, 680, 689, 932
AjnI	CCWGG	3 cut(s)	60, 282, 817
AluBI	AGCT	5 cut(s)	20, 192, 485, 692, 811
AluI	AGCT	5 cut(s)	20, 192, 485, 692, 811
Alw21I	GWGCWC	2 cut(s)	194, 751
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	934
Ama87I	CYCGRG	2 cut(s)	49, 80
AoxI	GGCC	2 cut(s)	207, 315
ApeKI	GCWGC	5 cut(s)	238, 482, 692, 773, 835
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp718I	GGTACC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	645
AvaI	CYCGRG	2 cut(s)	49, 80
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	142, 194
BbsI	GAAGAC	2 cut(s)	385, 554
Bbv12I	GWGCWC	2 cut(s)	194, 751
BbvI	GCAGC	5 cut(s)	225, 494, 679, 785, 822
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	3 cut(s)	62, 284, 819
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	4 cut(s)	132, 410, 812, 902
BfmI	CTRYAG	1 cut(s)	924
BfuAI	ACCTGC	1 cut(s)	489
BisI	GCNGC	5 cut(s)	239, 483, 693, 774, 836
BlsI	GCNGC	5 cut(s)	240, 484, 694, 775, 837
Bme1390I	CCNGG	3 cut(s)	62, 284, 819
BmeT110I	CYCGRG	2 cut(s)	49, 80
BmiI	GGNNCC	3 cut(s)	45, 97, 139
BmrFI	CCNGG	3 cut(s)	62, 284, 819
BmsI	GCATC	2 cut(s)	382, 537
BpiI	GAAGAC	2 cut(s)	385, 554
BpmI	CTGGAG	3 cut(s)	30, 83, 600
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	13, 569, 916
BseBI	CCWGG	3 cut(s)	62, 284, 819
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	3 cut(s)	121, 175, 282
BseMII	CTCAG	3 cut(s)	17, 508, 861
BseNI	ACTGG	3 cut(s)	13, 569, 916
BseRI	GAGGAG	2 cut(s)	98, 546
BseXI	GCAGC	5 cut(s)	225, 494, 679, 785, 822
BseYI	CCCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	843
BshFI	GGCC	2 cut(s)	209, 317
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	194, 751
BsiHKCI	CYCGRG	2 cut(s)	49, 80
BsiSI	CCGG	3 cut(s)	214, 318, 642
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	209, 317
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	2 cut(s)	49, 80
Bsp1286I	GDGCHC	3 cut(s)	142, 194, 751
Bsp1407I	TGTACA	2 cut(s)	291, 370
Bsp143I	GATC	3 cut(s)	406, 634, 939
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	2 cut(s)	4, 14
BspANI	GGCC	2 cut(s)	209, 317
BspCNI	CTCAG	3 cut(s)	18, 507, 862
BspLI	GGNNCC	3 cut(s)	45, 97, 139
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	934
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	317
BsrGI	TGTACA	2 cut(s)	291, 370
BsrI	ACTGG	3 cut(s)	13, 569, 916
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	406, 634, 939
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	3 cut(s)	62, 284, 819
Bst4CI	ACNGT	5 cut(s)	74, 586, 746, 790, 937
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	3 cut(s)	247, 504, 534
BstAUI	TGTACA	2 cut(s)	291, 370
BstC8I	GCNNGC	3 cut(s)	155, 211, 612
BstDEI	CTNAG	3 cut(s)	26, 494, 870
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	121, 175, 282
BstKTI	GATC	3 cut(s)	409, 637, 942
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	406, 634, 939
BstMWI	GCNNNNNNNGC	7 cut(s)	247, 473, 482, 504, 534, 620, 689
BstNI	CCWGG	3 cut(s)	62, 284, 819
BstNSI	RCATGY	3 cut(s)	238, 482, 614
BstSCI	CCNGG	3 cut(s)	60, 282, 817
BstSFI	CTRYAG	1 cut(s)	924
BstV1I	GCAGC	5 cut(s)	225, 494, 679, 785, 822
BstV2I	GAAGAC	2 cut(s)	385, 554
BsuRI	GGCC	2 cut(s)	209, 317
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	121, 175, 282
BtsIMutI	CAGTG	3 cut(s)	630, 751, 942
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	155, 211, 612
Cfr10I	RCCGGY	1 cut(s)	317
Csp6I	GTAC	6 cut(s)	96, 181, 232, 292, 371, 587
CviAII	CATG	8 cut(s)	187, 235, 302, 313, 362, 374, 479, 611
CviQI	GTAC	6 cut(s)	96, 181, 232, 292, 371, 587
DdeI	CTNAG	3 cut(s)	26, 494, 870
DpnI	GATC	3 cut(s)	408, 636, 941
DpnII	GATC	3 cut(s)	406, 634, 939
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	142, 194
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	2 cut(s)	49, 80
EcoICRI	GAGCTC	1 cut(s)	192
EcoRII	CCWGG	3 cut(s)	60, 282, 817
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	142, 194
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	8 cut(s)	190, 238, 305, 316, 365, 377, 482, 614
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	8 cut(s)	186, 234, 301, 312, 361, 373, 478, 610
FauI	CCCGC	1 cut(s)	7
FauNDI	CATATG	2 cut(s)	367, 533
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	5 cut(s)	239, 483, 693, 774, 836
FokI	GGATG	3 cut(s)	128, 182, 289
FriOI	GRGCYC	2 cut(s)	142, 194
Fsp4HI	GCNGC	5 cut(s)	239, 483, 693, 774, 836
FspBI	CTAG	4 cut(s)	132, 410, 812, 902
GluI	GCNGC	5 cut(s)	239, 483, 693, 774, 836
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	3 cut(s)	30, 83, 600
HaeIII	GGCC	2 cut(s)	209, 317
HapII	CCGG	3 cut(s)	214, 318, 642
Hin1II	CATG	8 cut(s)	190, 238, 305, 316, 365, 377, 482, 614
HincII	GTYRAC	2 cut(s)	58, 715
HindII	GTYRAC	2 cut(s)	58, 715
HpaII	CCGG	3 cut(s)	214, 318, 642
HphI	GGTGA	1 cut(s)	645
Hpy166II	GTNNAC	3 cut(s)	58, 715, 921
Hpy188I	TCNGA	2 cut(s)	808, 857
Hpy188III	TCNNGA	5 cut(s)	37, 106, 338, 617, 799
Hpy8I	GTNNAC	3 cut(s)	58, 715, 921
HpyAV	CCTTC	7 cut(s)	34, 82, 434, 518, 763, 875, 884
HpyCH4III	ACNGT	5 cut(s)	74, 586, 746, 790, 937
HpyCH4V	TGCA	8 cut(s)	241, 250, 365, 482, 666, 824, 926, 947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	247, 473, 482, 504, 534, 620, 689
HpyF3I	CTNAG	3 cut(s)	26, 494, 870
Hsp92II	CATG	8 cut(s)	190, 238, 305, 316, 365, 377, 482, 614
KpnI	GGTACC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	406, 634, 939
LmnI	GCTCC	4 cut(s)	11, 17, 137, 619
Lsp1109I	GCAGC	5 cut(s)	225, 494, 679, 785, 822
LweI	GCATC	2 cut(s)	382, 537
MaeI	CTAG	4 cut(s)	132, 410, 812, 902
MaeIII	GTNAC	2 cut(s)	335, 651
MalI	GATC	3 cut(s)	408, 636, 941
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	406, 634, 939
MboII	GAAGA	9 cut(s)	121, 229, 239, 269, 390, 448, 524, 554, 899
MfeI	CAATTG	1 cut(s)	684
MhlI	GDGCHC	3 cut(s)	142, 194, 751
MluCI	AATT	6 cut(s)	252, 287, 341, 657, 684, 908
MnlI	CCTC	7 cut(s)	58, 76, 259, 564, 567, 613, 682
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	2 cut(s)	416, 549
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	214, 318, 642
MspR9I	CCNGG	3 cut(s)	62, 284, 819
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	3 cut(s)	62, 284, 819
MwoI	GCNNNNNNNGC	7 cut(s)	247, 473, 482, 504, 534, 620, 689
NcoI	CCATGG	1 cut(s)	312
NdeI	CATATG	2 cut(s)	367, 533
NdeII	GATC	3 cut(s)	406, 634, 939
NlaIII	CATG	8 cut(s)	190, 238, 305, 316, 365, 377, 482, 614
NlaIV	GGNNCC	3 cut(s)	45, 97, 139
NmuCI	GTSAC	2 cut(s)	335, 651
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	3 cut(s)	238, 482, 614
PaeI	GCATGC	1 cut(s)	614
PaeR7I	CTCGAG	2 cut(s)	49, 80
PkrI	GCNGC	5 cut(s)	240, 484, 694, 775, 837
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	60, 282, 817
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	3 cut(s)	60, 282, 817
PspN4I	GGNNCC	3 cut(s)	45, 97, 139
PspXI	VCTCGAGB	2 cut(s)	49, 80
PstI	CTGCAG	1 cut(s)	928
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	6 cut(s)	97, 182, 233, 293, 372, 588
RsaNI	GTAC	6 cut(s)	96, 181, 232, 292, 371, 587
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	416, 549
SatI	GCNGC	5 cut(s)	239, 483, 693, 774, 836
Sau3AI	GATC	3 cut(s)	406, 634, 939
ScrFI	CCNGG	3 cut(s)	62, 284, 819
SduI	GDGCHC	3 cut(s)	142, 194, 751
SfaNI	GCATC	2 cut(s)	382, 537
SfcI	CTRYAG	1 cut(s)	924
Sfr274I	CTCGAG	2 cut(s)	49, 80
SlaI	CTCGAG	2 cut(s)	49, 80
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	49, 80
SmoI	CTYRAG	2 cut(s)	49, 80
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	6 cut(s)	252, 287, 341, 657, 684, 908
SsiI	CCGC	2 cut(s)	4, 14
SspMI	CTAG	4 cut(s)	132, 410, 812, 902
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	60, 282, 817
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	5 cut(s)	74, 586, 746, 790, 937
TaqI	TCGA	5 cut(s)	36, 50, 81, 565, 751
TasI	AATT	6 cut(s)	252, 287, 341, 657, 684, 908
TatI	WGTACW	3 cut(s)	231, 291, 370
Tru1I	TTAA	2 cut(s)	416, 549
Tru9I	TTAA	2 cut(s)	416, 549
TscAI	CASTG	3 cut(s)	637, 751, 942
TseFI	GTSAC	2 cut(s)	335, 651
TseI	GCWGC	5 cut(s)	238, 482, 692, 773, 835
Tsp45I	GTSAC	2 cut(s)	335, 651
TspDTI	ATGAA	3 cut(s)	350, 568, 773
TspRI	CASTG	3 cut(s)	637, 751, 942
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	3 cut(s)	238, 482, 614
XhoI	CTCGAG	2 cut(s)	49, 80
XmiI	GTMKAC	1 cut(s)	920
XspI	CTAG	4 cut(s)	132, 410, 812, 902
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.