Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Forward (+)

22986174 .. 22988777

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATCCTGAAGCTGTGAAGGAGTTTATACGAAGGGAAGTTCCAGATTGGGACGATGAGGTGGTGGCGATGGCTAGATTCAAGGCGTTTAGTGGTCAGAGGTCCGATTGGGAACTTAAATTTCAGTTTTGGCGTGATTTGATCATCAAGGTTTCGCGTCAGTTTGGGTTGTTCATCATTGATCCTGTCCAGGTGAAGAAGGCGTGGTTTGATCGAGGAGGAATGACGCCTTTATGCATTGATGATGTTGTGTTATTGATGCATAGTGAAGGTGATGTTGTGCGGATTAGTGATCTCGATGATCCCGGTAGTGGTCGTATTGCTCGTTTATTGAGGACAGTGAAGAACTTAATGGTTCAACAGCCAGTGAAGCAGGAAGAGATTCTGGAAAATACACTTGTTCTTGTTCCACTCTTGAAGGAGAAGGCGGCTGACGTGGTGAAGATATTATCTGAGGGACACTGGACTTCTACTTGTGTTGTCACGCTGAAGAAGTTTCGGAATTTGTGCAACGGTTCGAATGAGGCTTCAGCTGTTTTGAGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCTCTATCAATCGGGGAGAACTGATTGAGGGTGTTAAGGTGTCCTTTTCACAAACAGCACTTCCCGGTATCTCAACTTTAGACTGTGATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCCAAGATCAACTTGAAGTGATGGACCAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCATCTCTAAAGTCTGGACACAGGAAAGTTGCTCTAAGGCATGCAAGGGAATTGAAGGTGGTGACTGAGAGCAGAGAAAAATGCACGTCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTATAGCGGATTCCGAATCTACGAAAATGGTCTCAGAAGCAATTAAAACTGGAGCTAGGGTTATGAAGGACATCAAGATCAGTGCAGATGATGTTCATGACTATCTAGAAGAACTTGAGGAAACTATTGAATCACAGAAGCAAGTCGAAAAAGCTCTCGAATCAGCTCCATATCCAGATATTGATGATGAAGATATCGAAGAAGAATTACTGGAACTAGAGATGGACCTTGAAAGTGAAAGTTCTCAGGTCCTACCAGCGACTTCAGATACTGCAGATTCACTGACTGAGATGTTCTCAGAGCTTAAACTTGGCAAGACGAAACAAACATTGGAAGAGCAAGCTACTGAGCCAGCTCAGATGAAAGATAGCGGAAAAAAGATTCTTGAAGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

423

Amino Acids

47.49

Weight (kDa)

5.01

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_CHMP7_1st	PF25880	53 - 133	2.7e-22	CHMP7 N-terminal winged helix domain
Snf7	PF03357	262 - 417	4.7e-15	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AciI	CCGC	4 cut(s)	283, 428, 881, 1245
AclI	AACGTT	1 cut(s)	724
AclWI	GGATC	3 cut(s)	12, 176, 296
AcsI	RAATTY	2 cut(s)	119, 502
AcuI	CTGAAG	4 cut(s)	30, 509, 513, 1122
AcyI	GRCGYC	1 cut(s)	227
AfeI	AGCGCT	1 cut(s)	750
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	9 cut(s)	82, 359, 418, 710, 808, 871, 1004, 1106, 1262
AjiI	CACGTC	2 cut(s)	436, 840
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	1187, 1219
AluBI	AGCT	9 cut(s)	14, 533, 694, 929, 1028, 1040, 1177, 1217, 1229
AluI	AGCT	9 cut(s)	14, 533, 694, 929, 1028, 1040, 1177, 1217, 1229
Alw26I	GTCTC	1 cut(s)	910
AlwI	GGATC	3 cut(s)	12, 176, 296
AlwNI	CAGNNNCTG	1 cut(s)	1145
Aor51HI	AGCGCT	1 cut(s)	750
ApeKI	GCWGC	1 cut(s)	1265
ApoI	RAATTY	2 cut(s)	119, 502
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	568, 751
AspS9I	GGNCC	4 cut(s)	102, 718, 1099, 1123
AsuC2I	CCSGG	2 cut(s)	306, 639
AsuHPI	GGTGA	4 cut(s)	205, 284, 451, 826
AsuII	TTCGAA	1 cut(s)	518
AvaII	GGWCC	4 cut(s)	102, 718, 1099, 1123
BamHI	GGATCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	1065, 1097
BccI	CCATC	3 cut(s)	64, 709, 1090
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	2 cut(s)	306, 639
BcoDI	GTCTC	1 cut(s)	910
BfaI	CTAG	4 cut(s)	75, 930, 980, 1091
BfmI	CTRYAG	3 cut(s)	684, 876, 1146
BfoI	RGCGCY	1 cut(s)	752
BisI	GCNGC	2 cut(s)	429, 1266
BlsI	GCNGC	2 cut(s)	430, 1267
Bme1390I	CCNGG	3 cut(s)	191, 306, 639
Bme18I	GGWCC	4 cut(s)	102, 718, 1099, 1123
BmgBI	CACGTC	2 cut(s)	436, 840
BmgT120I	GGNCC	4 cut(s)	102, 718, 1099, 1123
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	191, 306, 639
BmsI	GCATC	2 cut(s)	249, 764
BplI	GAGNNNNNCTC	2 cut(s)	1154, 1186
BpmI	CTGGAG	1 cut(s)	945
Bpu10I	CCTNAGC	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	2 cut(s)	306, 639
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	910
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	4 cut(s)	365, 467, 928, 1089
BseBI	CCWGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	8 cut(s)	444, 810, 921, 1133, 1152, 1185, 1212, 1244
BseNI	ACTGG	4 cut(s)	365, 467, 928, 1089
BseRI	GAGGAG	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	653, 978
Bsh1236I	CGCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	306, 639
BslFI	GGGAC	2 cut(s)	65, 471
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	910
BsmFI	GGGAC	2 cut(s)	65, 471
Bso31I	GGTCTC	1 cut(s)	910
Bsp119I	TTCGAA	1 cut(s)	518
Bsp143I	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
BspACI	CCGC	4 cut(s)	283, 428, 881, 1245
BspCNI	CTCAG	8 cut(s)	445, 811, 920, 1132, 1153, 1184, 1213, 1243
BspFNI	CGCG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	12, 176, 296
BspQI	GCTCTTC	1 cut(s)	1203
BspT104I	TTCGAA	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	910
BsrI	ACTGG	4 cut(s)	365, 467, 928, 1089
BssMI	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	340, 515, 659
Bst6I	CTCTTC	2 cut(s)	372, 1203
BstACI	GRCGYC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	753, 795, 1215, 1227
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	2 cut(s)	568, 751
BstKTI	GATC	8 cut(s)	7, 144, 184, 214, 295, 304, 703, 954
BstMAI	GTCTC	1 cut(s)	910
BstMBI	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	3 cut(s)	189, 304, 637
BstSFI	CTRYAG	3 cut(s)	684, 876, 1146
BstUI	CGCG	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	83
BtrI	CACGTC	2 cut(s)	436, 840
BtsIMutI	CAGTG	5 cut(s)	345, 372, 460, 961, 1154
Cac8I	GCNNGC	4 cut(s)	753, 795, 1215, 1227
CaiI	CAGNNNCTG	1 cut(s)	1145
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	2 cut(s)	568, 751
Cfr13I	GGNCC	4 cut(s)	102, 718, 1099, 1123
CseI	GACGC	2 cut(s)	146, 235
CviAII	CATG	2 cut(s)	794, 971
DpnI	GATC	8 cut(s)	6, 143, 183, 213, 294, 303, 702, 953
DpnII	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
Eam1104I	CTCTTC	2 cut(s)	372, 1203
EarI	CTCTTC	2 cut(s)	372, 1203
Eco31I	GGTCTC	1 cut(s)	910
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	4 cut(s)	102, 718, 1099, 1123
Eco47III	AGCGCT	1 cut(s)	750
Eco57I	CTGAAG	4 cut(s)	30, 509, 513, 1122
EcoO109I	RGGNCCY	1 cut(s)	1123
EcoRII	CCWGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	1069
EcoT22I	ATGCAT	2 cut(s)	239, 264
FaeI	CATG	2 cut(s)	797, 974
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 690, 722
FaqI	GGGAC	2 cut(s)	65, 471
FatI	CATG	2 cut(s)	793, 970
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	429, 1266
Fsp4HI	GCNGC	2 cut(s)	429, 1266
FspBI	CTAG	4 cut(s)	75, 930, 980, 1091
GlaI	GCGC	2 cut(s)	567, 750
GluI	GCNGC	2 cut(s)	429, 1266
GsuI	CTGGAG	1 cut(s)	945
HaeII	RGCGCY	1 cut(s)	752
HapII	CCGG	2 cut(s)	306, 639
HgaI	GACGC	2 cut(s)	146, 235
HhaI	GCGC	2 cut(s)	568, 751
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	797, 974
Hin6I	GCGC	2 cut(s)	566, 749
HinP1I	GCGC	2 cut(s)	566, 749
HinfI	GANTC	9 cut(s)	78, 382, 541, 884, 890, 1004, 1034, 1151, 1255
HpaII	CCGG	2 cut(s)	306, 639
HphI	GGTGA	4 cut(s)	205, 284, 451, 826
HpyAV	CCTTC	8 cut(s)	13, 27, 193, 263, 412, 418, 802, 934
HpyCH4III	ACNGT	3 cut(s)	340, 515, 659
HpyCH4IV	ACGT	3 cut(s)	435, 724, 839
HpyCH4V	TGCA	8 cut(s)	237, 262, 510, 670, 797, 837, 959, 1148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpySE526I	ACGT	3 cut(s)	435, 724, 839
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	797, 974
HspAI	GCGC	2 cut(s)	566, 749
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
LguI	GCTCTTC	1 cut(s)	1203
LmnI	GCTCC	3 cut(s)	699, 926, 1045
LweI	GCATC	2 cut(s)	249, 764
MaeI	CTAG	4 cut(s)	75, 930, 980, 1091
MaeII	ACGT	3 cut(s)	435, 724, 839
MaeIII	GTNAC	4 cut(s)	481, 542, 814, 840
MalI	GATC	8 cut(s)	6, 143, 183, 213, 294, 303, 702, 953
MboI	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	119, 502, 803, 915, 1079
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	9 cut(s)	52, 93, 209, 212, 327, 448, 517, 595, 985
Mph1103I	ATGCAT	2 cut(s)	239, 264
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	5 cut(s)	117, 350, 609, 918, 1179
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	2 cut(s)	306, 639
MspR9I	CCNGG	3 cut(s)	191, 306, 639
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	306, 639
NdeII	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
NlaIII	CATG	2 cut(s)	797, 974
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	4 cut(s)	481, 542, 814, 840
NsiI	ATGCAT	2 cut(s)	239, 264
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	797
PagI	TCATGA	1 cut(s)	970
PciSI	GCTCTTC	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	8 cut(s)	78, 382, 884, 890, 1004, 1034, 1151, 1255
PkrI	GCNGC	2 cut(s)	430, 1267
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PpuMI	RGGWCCY	1 cut(s)	1123
Psp1406I	AACGTT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	1123
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	102, 718, 1099, 1123
PspPPI	RGGWCCY	1 cut(s)	1123
PstI	CTGCAG	1 cut(s)	1150
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	1203
SaqAI	TTAA	5 cut(s)	117, 350, 609, 918, 1179
SatI	GCNGC	2 cut(s)	429, 1266
Sau3AI	GATC	8 cut(s)	4, 141, 181, 211, 292, 301, 700, 951
Sau96I	GGNCC	4 cut(s)	102, 718, 1099, 1123
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	3 cut(s)	191, 306, 639
SfaNI	GCATC	2 cut(s)	249, 764
SfcI	CTRYAG	3 cut(s)	684, 876, 1146
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	4 cut(s)	102, 718, 1099, 1123
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SphI	GCATGC	1 cut(s)	797
Sse9I	AATT	5 cut(s)	119, 502, 803, 915, 1079
SsiI	CCGC	4 cut(s)	283, 428, 881, 1245
SspMI	CTAG	4 cut(s)	75, 930, 980, 1091
StyD4I	CCNGG	3 cut(s)	189, 304, 637
TaaI	ACNGT	3 cut(s)	340, 515, 659
TaiI	ACGT	3 cut(s)	438, 727, 842
TaqI	TCGA	6 cut(s)	214, 297, 518, 1020, 1032, 1071
TasI	AATT	5 cut(s)	119, 502, 803, 915, 1079
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	8 cut(s)	78, 382, 884, 890, 1004, 1034, 1151, 1255
Tru1I	TTAA	5 cut(s)	117, 350, 609, 918, 1179
Tru9I	TTAA	5 cut(s)	117, 350, 609, 918, 1179
TscAI	CASTG	5 cut(s)	345, 372, 467, 961, 1161
TseFI	GTSAC	4 cut(s)	481, 542, 814, 840
TseI	GCWGC	1 cut(s)	1265
Tsp45I	GTSAC	4 cut(s)	481, 542, 814, 840
TspDTI	ATGAA	5 cut(s)	163, 953, 959, 1077, 1250
TspRI	CASTG	5 cut(s)	345, 372, 467, 961, 1161
VpaK11BI	GGWCC	4 cut(s)	102, 718, 1099, 1123
XapI	RAATTY	2 cut(s)	119, 502
XbaI	TCTAGA	1 cut(s)	979
XceI	RCATGY	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	4 cut(s)	75, 930, 980, 1091
Zsp2I	ATGCAT	2 cut(s)	239, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.