Rw3G024000

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
30557254 .. 30560607
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024000.1

Sequence Viewer

Length: 1434 bp
ATGGAGTGCTCAAACCATTACAATATTACTCAATGCCCACCGGGTTATGGTTGTCCGGTTGAGATGAATGACTATAGCAACTGCCACGATGCCGTATTACCCATTAAACTAAACTGGATTAGCGAGAAAGTGAGAGAGTTGATCAGGAAGGAAGTACAAGATTGGGATGACGAATTGGTTTGCAGAGCCCGATTCAAAGCCTTCAGTGGCCAACGATCCGATTGGGAACCCATTTACCTCTTCTGGAGAAACTTGATTCTCACCATCACCCATTGGTTCAATCGAGGAGGACTCACTCCCTTATGCCTCGACGACGTTTTGTTTGTGATGTACAATGAAGGTGAAATTGTGCCCGCTGTGGATGTTGCGGACCCCACTCCTCGGGCCGTCTCTCCCAGATTTTCAGAAGAGTCACCAGCTCCGTGCTTGGCCTTGCTTCATCAACCCCAACTCCTCAGCTTCTCGTGTCCCATGAGCGTCTCGTTCTTACCCCACTTCTCAAGGCATGTGATTCTTGTTTTTTTTTTAACTGATAAAGCTGTTCAAATTGTGGAAGGTTTGTCGGAATGCCATTGGAATTCTTGGTGCATTGTCACCATGAAGAGGTTCCGGGACTTGTGTGGAGGGCCCTTTGAAGGTTCGGCAATCTTGTCTCACTTGTCTGCGCAAGGCAAGGCGCGGTATCTCTCGTTTCCCAACAGGGGAGACTTATTCGAGGGTGTGAAAGTTTCCATTTCAGCATCTTCTGTTCCTAGTGTTTCAAGTTTAGATCGTGATGTTTTGCACTTGAATTGGACAAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGCCGCTGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCCGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGGGAGTTGAAGTTGGCGAATGAGAGTAGAGAAAAATGTGCAAACTTCTTGAACAGAGTGATGGAAGTGCTTGATTTTATCACAAATGCTGAATTGACAAAGAAGGTTTCTGAAGCCATCCAAATTGGAGCTAAAGCTATAAAGGAAAATAGGATTAGTATGGAAGAAGTCGAAGGTAGCCTCCAAGAAATTGAGGAGAGCATTGATACATTAAAGCAATTAGAAAATGTTATAGAATCAACCCCCCTGTACTCAGTTACGGATGATGAAGAAAATATCGAAGAGGAGTTCAAGAAACTAGAACTGGATATTGGACTTGAAAACGATCACAAACCAATCCAGGAAACCGAGATTAATAATGCAGTAGAAACGGACATTTCAGAATCTGCTGAAGCGTTGATAGATTCTTTATCAAATCTCAAGCTCGTGGATGGTGGTCAAGCAAGGATACCAGCAGTTCACAGCACTGCCTCGACAGCAAGAAACAACAAAACAAAAGGTCCTGAGCTTGCAACTGCCTAA

Protein Analysis

477

Amino Acids

53.78

Weight (kDa)

5.18

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_CHMP7_1st PF25880 52 - 118 1.2e-12 CHMP7 N-terminal winged helix domain
Snf7 PF03357 261 - 422 3.8e-14 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 666
AccII CGCG 1 cut(s) 679
AccIII TCCGGA 1 cut(s) 881
AciI CCGC 5 cut(s) 354, 368, 679, 835, 838
AclI AACGTT 1 cut(s) 848
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 3 cut(s) 187, 1044, 1323
AfaI GTAC 3 cut(s) 156, 332, 1163
AfiI CCNNNNNNNGG 5 cut(s) 47, 381, 603, 635, 701
AjnI CCWGG 1 cut(s) 1251
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
AluBI AGCT 8 cut(s) 419, 459, 539, 869, 1043, 1049, 1336, 1420
AluI AGCT 8 cut(s) 419, 459, 539, 869, 1043, 1049, 1336, 1420
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 5 cut(s) 394, 484, 657, 699, 799
AlwI GGATC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 1298
Ama87I CYCGRG 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 881
AoxI GGCC 4 cut(s) 208, 384, 429, 626
ApaI GGGCCC 1 cut(s) 630
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 1266
Asp700I GAANNNNTTC 1 cut(s) 605
AspLEI GCGC 2 cut(s) 667, 679
AspS9I GGNCC 5 cut(s) 370, 384, 626, 627, 1412
AsuC2I CCSGG 2 cut(s) 42, 611
AsuHPI GGTGA 5 cut(s) 253, 259, 353, 405, 586
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 2 cut(s) 370, 1412
BaeGI GKGCMC 2 cut(s) 354, 630
BalI TGGCCA 1 cut(s) 210
BanII GRGCYC 2 cut(s) 190, 630
BauI CACGAG 2 cut(s) 463, 1337
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 455
BccI CCATC 4 cut(s) 272, 967, 1037, 1337
BceAI ACGGC 2 cut(s) 77, 371
BciT130I CCWGG 1 cut(s) 1253
BciVI GTATCC 1 cut(s) 1353
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 2 cut(s) 42, 611
BcoDI GTCTC 5 cut(s) 394, 484, 657, 699, 799
BfaI CTAG 2 cut(s) 753, 1211
BfmI CTRYAG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 1353
BisI GCNGC 1 cut(s) 838
BlsI GCNGC 1 cut(s) 839
Bme1390I CCNGG 3 cut(s) 42, 611, 1253
Bme18I GGWCC 2 cut(s) 370, 1412
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 5 cut(s) 370, 384, 626, 627, 1412
BmiI GGNNCC 4 cut(s) 228, 372, 608, 628
BmrFI CCNGG 3 cut(s) 42, 611, 1253
BmsI GCATC 2 cut(s) 79, 749
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 2 cut(s) 455, 1416
BpuEI CTTGAG 2 cut(s) 484, 1316
BpuMI CCSGG 2 cut(s) 42, 611
BsaJI CCNNGG 1 cut(s) 380
BsaWI WCCGGW 2 cut(s) 55, 881
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 908, 938
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 381, 603, 635, 701
Bse1I ACTGG 2 cut(s) 119, 1221
BseAI TCCGGA 1 cut(s) 881
BseBI CCWGG 1 cut(s) 1253
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 5 cut(s) 172, 367, 1029, 1180, 1348
BseLI CCNNNNNNNGG 5 cut(s) 47, 381, 603, 635, 701
BseMII CTCAG 4 cut(s) 469, 893, 1179, 1407
BseNI ACTGG 2 cut(s) 119, 1221
BseRI GAGGAG 5 cut(s) 300, 369, 443, 1121, 1211
BseSI GKGCMC 2 cut(s) 354, 630
Bsh1236I CGCG 1 cut(s) 679
BshFI GGCC 4 cut(s) 210, 386, 431, 628
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 4 cut(s) 41, 56, 610, 882
BslFI GGGAC 2 cut(s) 453, 626
BslI CCNNNNNNNGG 5 cut(s) 47, 381, 603, 635, 701
BsmAI GTCTC 5 cut(s) 394, 484, 657, 699, 799
BsmBI CGTCTC 2 cut(s) 394, 484
BsmFI GGGAC 2 cut(s) 453, 626
BsmI GAATGC 2 cut(s) 572, 877
BsnI GGCC 4 cut(s) 210, 386, 431, 628
BsoBI CYCGRG 1 cut(s) 381
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 4 cut(s) 11, 190, 354, 630
Bsp13I TCCGGA 1 cut(s) 881
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 141, 215, 769, 1237
BspACI CCGC 5 cut(s) 354, 368, 679, 835, 838
BspANI GGCC 4 cut(s) 210, 386, 431, 628
BspCNI CTCAG 4 cut(s) 468, 894, 1178, 1408
BspEI TCCGGA 1 cut(s) 881
BspFNI CGCG 1 cut(s) 679
BspLI GGNNCC 4 cut(s) 228, 372, 608, 628
BspPI GGATC 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 2 cut(s) 119, 1221
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 4 cut(s) 141, 215, 769, 1237
BssSI CACGAG 2 cut(s) 463, 1337
Bst2BI CACGAG 2 cut(s) 463, 1337
Bst2UI CCWGG 1 cut(s) 1253
Bst6I CTCTTC 4 cut(s) 245, 402, 596, 1188
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 354, 909, 1422
BstDEI CTNAG 4 cut(s) 455, 902, 1165, 1416
BstF5I GGATG 5 cut(s) 172, 367, 1029, 1180, 1348
BstFNI CGCG 1 cut(s) 679
BstHHI GCGC 2 cut(s) 667, 679
BstKTI GATC 4 cut(s) 144, 218, 772, 1240
BstMAI GTCTC 5 cut(s) 394, 484, 657, 699, 799
BstMBI GATC 4 cut(s) 141, 215, 769, 1237
BstMWI GCNNNNNNNGC 1 cut(s) 1388
BstNI CCWGG 1 cut(s) 1253
BstNSI RCATGY 2 cut(s) 509, 911
BstSCI CCNGG 3 cut(s) 40, 609, 1251
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 2 cut(s) 354, 630
BstUI CGCG 1 cut(s) 679
BsuI GTATCC 1 cut(s) 1353
BsuRI GGCC 4 cut(s) 210, 386, 431, 628
BtsCI GGATG 5 cut(s) 172, 367, 1029, 1180, 1348
BtsI GCAGTG 1 cut(s) 1377
BtsIMutI CAGTG 2 cut(s) 211, 1377
Cac8I GCNNGC 3 cut(s) 354, 909, 1422
CaiI CAGNNNCTG 1 cut(s) 1298
CfoI GCGC 2 cut(s) 667, 679
Cfr13I GGNCC 5 cut(s) 370, 384, 626, 627, 1412
CseI GACGC 1 cut(s) 466
Csp6I GTAC 3 cut(s) 155, 331, 1162
CviAII CATG 4 cut(s) 472, 506, 598, 908
CviQI GTAC 3 cut(s) 155, 331, 1162
DdeI CTNAG 4 cut(s) 455, 902, 1165, 1416
DpnI GATC 4 cut(s) 143, 217, 771, 1239
DpnII GATC 4 cut(s) 141, 215, 769, 1237
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 4 cut(s) 245, 402, 596, 1188
EarI CTCTTC 4 cut(s) 245, 402, 596, 1188
Eco24I GRGCYC 2 cut(s) 190, 630
Eco47I GGWCC 2 cut(s) 370, 1412
Eco57I CTGAAG 3 cut(s) 187, 1044, 1323
Eco88I CYCGRG 1 cut(s) 381
EcoO109I RGGNCCY 3 cut(s) 626, 627, 1412
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 1251
EcoT38I GRGCYC 2 cut(s) 190, 630
Esp3I CGTCTC 2 cut(s) 394, 484
FaeI CATG 4 cut(s) 475, 509, 601, 911
FaqI GGGAC 2 cut(s) 453, 626
FatI CATG 4 cut(s) 471, 505, 597, 907
FauI CCCGC 1 cut(s) 361
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 838
FokI GGATG 5 cut(s) 179, 374, 1016, 1187, 1355
FriOI GRGCYC 2 cut(s) 190, 630
Fsp4HI GCNGC 1 cut(s) 838
FspBI CTAG 2 cut(s) 753, 1211
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 2 cut(s) 666, 678
GluI GCNGC 1 cut(s) 838
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 4 cut(s) 210, 386, 431, 628
HapII CCGG 4 cut(s) 41, 56, 610, 882
HgaI GACGC 1 cut(s) 466
HhaI GCGC 2 cut(s) 667, 679
Hin1II CATG 4 cut(s) 475, 509, 601, 911
Hin6I GCGC 2 cut(s) 665, 677
HinP1I GCGC 2 cut(s) 665, 677
HinfI GANTC 8 cut(s) 192, 256, 291, 410, 511, 1148, 1295, 1316
HpaII CCGG 4 cut(s) 41, 56, 610, 882
HphI GGTGA 5 cut(s) 253, 259, 353, 405, 586
Hpy166II GTNNAC 1 cut(s) 1372
Hpy188I TCNGA 6 cut(s) 220, 406, 565, 903, 1024, 1294
Hpy188III TCNNGA 7 cut(s) 145, 244, 773, 882, 961, 1204, 1415
Hpy8I GTNNAC 1 cut(s) 1372
Hpy99I CGWCG 2 cut(s) 314, 317
HpyAV CCTTC 7 cut(s) 142, 211, 332, 548, 629, 1009, 1079
HpyCH4IV ACGT 2 cut(s) 315, 848
HpyCH4V TGCA 8 cut(s) 183, 588, 784, 877, 911, 953, 1274, 1424
HpyF10VI GCNNNNNNNGC 1 cut(s) 1388
HpyF3I CTNAG 4 cut(s) 455, 902, 1165, 1416
HpySE526I ACGT 2 cut(s) 315, 848
Hsp92II CATG 4 cut(s) 475, 509, 601, 911
HspAI GCGC 2 cut(s) 665, 677
Kpn2I TCCGGA 1 cut(s) 881
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 141, 215, 769, 1237
LmnI GCTCC 2 cut(s) 424, 1040
LweI GCATC 2 cut(s) 79, 749
MaeI CTAG 2 cut(s) 753, 1211
MaeII ACGT 2 cut(s) 315, 848
MaeIII GTNAC 3 cut(s) 411, 592, 1168
MalI GATC 4 cut(s) 143, 217, 771, 1239
MboI GATC 4 cut(s) 141, 215, 769, 1237
MboII GAAGA 7 cut(s) 232, 419, 613, 735, 1088, 1193, 1205
MhlI GDGCHC 4 cut(s) 11, 190, 354, 630
MlsI TGGCCA 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 2 cut(s) 285, 419
MmeI TCCRAC 1 cut(s) 543
Mox20I TGGCCA 1 cut(s) 210
MroI TCCGGA 1 cut(s) 881
MroXI GAANNNNTTC 1 cut(s) 605
MscI TGGCCA 1 cut(s) 210
MseI TTAA 5 cut(s) 105, 527, 851, 1124, 1266
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 2 cut(s) 356, 840
MspI CCGG 4 cut(s) 41, 56, 610, 882
MspR9I CCNGG 3 cut(s) 42, 611, 1253
Mva1269I GAATGC 2 cut(s) 572, 877
MvaI CCWGG 1 cut(s) 1253
MvnI CGCG 1 cut(s) 679
MwoI GCNNNNNNNGC 1 cut(s) 1388
NciI CCSGG 2 cut(s) 42, 611
NdeII GATC 4 cut(s) 141, 215, 769, 1237
NlaIII CATG 4 cut(s) 475, 509, 601, 911
NlaIV GGNNCC 4 cut(s) 228, 372, 608, 628
NmuCI GTSAC 2 cut(s) 411, 592
NsbI TGCGCA 1 cut(s) 666
NspI RCATGY 2 cut(s) 509, 911
PaeI GCATGC 1 cut(s) 911
PctI GAATGC 2 cut(s) 572, 877
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 6 cut(s) 192, 256, 511, 1148, 1295, 1316
PfoI TCCNGGA 2 cut(s) 609, 1251
PkrI GCNGC 1 cut(s) 839
PleI GAGTC 2 cut(s) 285, 418
PpsI GAGTC 2 cut(s) 285, 418
PpuMI RGGWCCY 1 cut(s) 1412
PshBI ATTAAT 1 cut(s) 1266
Psp1406I AACGTT 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 1412
Psp6I CCWGG 1 cut(s) 1251
PspGI CCWGG 1 cut(s) 1251
PspN4I GGNNCC 4 cut(s) 228, 372, 608, 628
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 5 cut(s) 370, 384, 626, 627, 1412
PspPPI RGGWCCY 1 cut(s) 1412
PstNI CAGNNNCTG 1 cut(s) 1298
RsaI GTAC 3 cut(s) 156, 332, 1163
RsaNI GTAC 3 cut(s) 155, 331, 1162
SaqAI TTAA 5 cut(s) 105, 527, 851, 1124, 1266
SatI GCNGC 1 cut(s) 838
Sau3AI GATC 4 cut(s) 141, 215, 769, 1237
Sau96I GGNCC 5 cut(s) 370, 384, 626, 627, 1412
SchI GAGTC 2 cut(s) 285, 419
ScrFI CCNGG 3 cut(s) 42, 611, 1253
SduI GDGCHC 4 cut(s) 11, 190, 354, 630
SfaNI GCATC 2 cut(s) 79, 749
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 2 cut(s) 370, 1412
SmlI CTYRAG 2 cut(s) 499, 1331
SmoI CTYRAG 2 cut(s) 499, 1331
SphI GCATGC 1 cut(s) 911
SsiI CCGC 5 cut(s) 354, 368, 679, 835, 838
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 753, 1211
StyD4I CCNGG 3 cut(s) 40, 609, 1251
TaiI ACGT 2 cut(s) 318, 851
TaqI TCGA 6 cut(s) 283, 309, 714, 1083, 1191, 1385
TatI WGTACW 3 cut(s) 154, 330, 1161
TauI GCSGC 1 cut(s) 840
TfiI GAWTC 6 cut(s) 192, 256, 511, 1148, 1295, 1316
Tru1I TTAA 5 cut(s) 105, 527, 851, 1124, 1266
Tru9I TTAA 5 cut(s) 105, 527, 851, 1124, 1266
TscAI CASTG 2 cut(s) 211, 1384
TseFI GTSAC 2 cut(s) 411, 592
Tsp45I GTSAC 2 cut(s) 411, 592
TspDTI ATGAA 5 cut(s) 80, 351, 428, 614, 1194
TspGWI ACGGA 3 cut(s) 411, 1187, 1298
TspRI CASTG 2 cut(s) 211, 1384
VpaK11BI GGWCC 2 cut(s) 370, 1412
VspI ATTAAT 1 cut(s) 1266
XapI RAATTY 1 cut(s) 577
XceI RCATGY 2 cut(s) 509, 911
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 2 cut(s) 753, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.