pycom09g19930

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
20754760 .. 20757130
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19930.7

Sequence Viewer

Length: 1332 bp
ATGGAAGAGAGTGAGAGTGAGAGAGTGAGGGAGTTGATAGGGAAAGCAGTGGGCGATTGGGACGACCAAGTGATGACGAGAGCCCGATTCAAGGCGTTTAGCGGGCAGAGATCCGATTGGGAACCCGTTTACCTCTTCTGGAGAGATTTAATCCTCTGCGTCGCTCGCCAGTTGGACGTTTTCTTCATTTCCCCCTCTCGCCTCAATACCCACTGGTTCAATCGAGGAGGCCTCGCCCCTCTCTGCCTCCCCACAGTTCTGTTTGAAATGTATAATGAAGGTGAGGTTGTTCTCAGTGTGGATCTTGTGGACCCCACTGCTGGGCGTCTCTCCCAGATTTTCAGCAGACTTTCCAATTCCATGGCAATGCTCAGGACCACTCCGGAGCTTCTTATGTCCCAAGATCGTCTCATCCTTACCTCACTTTTGAAGGATAAAGCTGCTCAAGTTGTGAAGCTTTTATCTGAATGCCATTGGACTTCTTCATGCGTCATCACCATGAAGAGGTTCCAGGAATTATGTGGAGGACCCGATGAAGCTTCCGCGGTCTTGTCTCATTTGGTAGCGCAAGCCAAGGCACGCTATCTCTCTCTTTCCAAGGGAGACCTCATAGAGGGTGTGAAACTTTCCCTTTCAGCATCTTCCCTTCCGAGTATTTCAAGTCTAGATTGTGATGTTCTGCACTTGATTTGGACAACAGAAAAGCTTCAACAGCAACTTCATGTGATTGACCAACGTTATGAAACGTCACGAAAATCAGCATTAGCTTGTTTGAAATCTGGAAACAAGAAAGCAGCGCTGAGGCATGCAAGGGAGTTAAAGTTAGCCAATGACAGTAGGGAAAAATGTGCAGCTCTCTTGAATAGAGTGGAGGAAGTCCTTGATGTTATTGCAAGTGCCGAATCAACGAAGAAGGTTTCCGAAGCCATTCAAATTGGAGCTCAAGCTATAAAGGAAAATAAGATTAGTGTGGAAGAAGTCCAGCATAGCTTACAAGAAATAGAGGAATGCATTGATACACAAAAGGAAATAGAAAATGTTCTAGAAGCAACTTCCCTTTACACAGTTAATGATGAAGAAAGCATCGATGAGGAGTTGAAGAAATTAGAGCTGGATATGGGATGTGAAAACCTTCACGAACCAAACCTGAGCAGCAGGGTTAACAGCGCGGGGAAAACAGAGGCTTCAGACTCAGCTGATTCATTGATAGACTCTTTATATAATCTCAAGCTTGTAGATGATGGTCAAGCAAGGATTCCAGCAGTTGAGGAGGGCACTGCTGAAACAAAGAGAAACAAGAAAACAGAGAGGTCTGAGCTTCAAATTGCCTAA

Protein Analysis

444

Amino Acids

49.48

Weight (kDa)

5.11

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 545, 1169
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 4 cut(s) 102, 543, 545, 1169
AclI AACGTT 1 cut(s) 736
AclWI GGATC 2 cut(s) 105, 309
AcuI CTGAAG 1 cut(s) 1170
AcyI GRCGYC 1 cut(s) 325
AfeI AGCGCT 1 cut(s) 798
AfiI CCNNNNNNNGG 5 cut(s) 91, 320, 321, 504, 613
AjnI CCWGG 1 cut(s) 510
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 4 cut(s) 332, 413, 558, 597
AlwI GGATC 2 cut(s) 105, 309
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 798
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 4 cut(s) 440, 794, 851, 1152
Asp700I GAANNNNTTC 5 cut(s) 506, 705, 927, 1038, 1131
AspLEI GCGC 3 cut(s) 568, 799, 1169
AspS9I GGNCC 3 cut(s) 310, 375, 527
AsuHPI GGTGA 2 cut(s) 293, 487
AvaII GGWCC 3 cut(s) 310, 375, 527
BaeGI GKGCMC 1 cut(s) 1277
BanII GRGCYC 2 cut(s) 85, 943
Bbv12I GWGCWC 1 cut(s) 943
BbvCI CCTCAGC 1 cut(s) 800
BbvI GCAGC 4 cut(s) 427, 806, 863, 1164
BccI CCATC 1 cut(s) 1235
BciT130I CCWGG 1 cut(s) 512
BcoDI GTCTC 4 cut(s) 332, 413, 558, 597
BfaI CTAG 2 cut(s) 665, 1043
BfoI RGCGCY 1 cut(s) 800
BisI GCNGC 4 cut(s) 441, 795, 852, 1153
BlsI GCNGC 4 cut(s) 442, 796, 853, 1154
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 3 cut(s) 310, 375, 527
BmgT120I GGNCC 3 cut(s) 310, 375, 527
BmiI GGNNCC 4 cut(s) 123, 312, 509, 529
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 647, 1092
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 3 cut(s) 371, 800, 1148
BpuEI CTTGAG 3 cut(s) 429, 927, 1211
Bsa29I ATCGAT 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 360, 543, 573, 597
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 320, 321, 504, 613
Bse1I ACTGG 2 cut(s) 169, 218
Bse3DI GCAATG 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 1 cut(s) 512
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 4 cut(s) 360, 543, 573, 597
BseGI GGATG 2 cut(s) 411, 1127
BseLI CCNNNNNNNGG 5 cut(s) 91, 320, 321, 504, 613
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 6 cut(s) 307, 385, 791, 1139, 1206, 1305
BseNI ACTGG 2 cut(s) 169, 218
BseRI GAGGAG 3 cut(s) 240, 1106, 1283
BseSI GKGCMC 1 cut(s) 1277
BseXI GCAGC 4 cut(s) 427, 806, 863, 1164
BseYI CCCAGC 1 cut(s) 320
BsgI GTGCAG 2 cut(s) 665, 870
Bsh1236I CGCG 2 cut(s) 545, 1169
BshFI GGCC 1 cut(s) 231
BshVI ATCGAT 1 cut(s) 1086
BsiHKAI GWGCWC 1 cut(s) 943
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 74, 382
BslI CCNNNNNNNGG 5 cut(s) 91, 320, 321, 504, 613
BsmAI GTCTC 4 cut(s) 332, 413, 558, 597
BsmBI CGTCTC 2 cut(s) 332, 413
BsmFI GGGAC 2 cut(s) 74, 382
BsmI GAATGC 2 cut(s) 473, 1013
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 597
Bsp1286I GDGCHC 3 cut(s) 85, 943, 1277
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 110, 301, 403
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 4 cut(s) 102, 543, 545, 1169
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 6 cut(s) 306, 384, 792, 1140, 1205, 1306
BspDI ATCGAT 1 cut(s) 1086
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 2 cut(s) 545, 1169
BspLI GGNNCC 4 cut(s) 123, 312, 509, 529
BspPI GGATC 2 cut(s) 105, 309
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 2 cut(s) 169, 218
BssECI CCNNGG 4 cut(s) 360, 543, 573, 597
BssMI GATC 3 cut(s) 110, 301, 403
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 3 cut(s) 360, 573, 597
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 256, 836, 1066
Bst6I CTCTTC 2 cut(s) 140, 497
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 5 cut(s) 104, 166, 570, 580, 807
BstDEI CTNAG 6 cut(s) 293, 371, 800, 1148, 1192, 1314
BstDSI CCRYGG 2 cut(s) 360, 543
BstENI CCTNNNNNAGG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 411, 1127
BstFNI CGCG 2 cut(s) 545, 1169
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 3 cut(s) 568, 799, 1169
BstKTI GATC 3 cut(s) 113, 304, 406
BstMAI GTCTC 4 cut(s) 332, 413, 558, 597
BstMBI GATC 3 cut(s) 110, 301, 403
BstMWI GCNNNNNNNGC 2 cut(s) 165, 712
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 1277
BstUI CGCG 2 cut(s) 545, 1169
BstV1I GCAGC 4 cut(s) 427, 806, 863, 1164
BstX2I RGATCY 2 cut(s) 110, 301
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 2 cut(s) 110, 301
Bsu15I ATCGAT 1 cut(s) 1086
BsuRI GGCC 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 1086
BtgI CCRYGG 2 cut(s) 360, 543
BtsCI GGATG 2 cut(s) 411, 1127
BtsI GCAGTG 3 cut(s) 54, 315, 1275
BtsIMutI CAGTG 5 cut(s) 54, 211, 301, 315, 1275
Cac8I GCNNGC 5 cut(s) 104, 166, 570, 580, 807
CfoI GCGC 3 cut(s) 568, 799, 1169
Cfr13I GGNCC 3 cut(s) 310, 375, 527
Cfr42I CCGCGG 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 1086
CseI GACGC 3 cut(s) 148, 314, 478
CviAII CATG 5 cut(s) 361, 486, 499, 722, 806
DdeI CTNAG 6 cut(s) 293, 371, 800, 1148, 1192, 1314
DpnI GATC 3 cut(s) 112, 303, 405
DpnII GATC 3 cut(s) 110, 301, 403
Eam1104I CTCTTC 2 cut(s) 140, 497
EarI CTCTTC 2 cut(s) 140, 497
Ecl136II GAGCTC 1 cut(s) 941
Eco130I CCWWGG 3 cut(s) 360, 573, 597
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 85, 943
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 3 cut(s) 310, 375, 527
Eco47III AGCGCT 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 941
Eco57I CTGAAG 1 cut(s) 1170
EcoICRI GAGCTC 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 3 cut(s) 360, 573, 597
EcoT22I ATGCAT 1 cut(s) 1013
EcoT38I GRGCYC 2 cut(s) 85, 943
ErhI CCWWGG 3 cut(s) 360, 573, 597
Esp3I CGTCTC 2 cut(s) 332, 413
FaeI CATG 5 cut(s) 364, 489, 502, 725, 809
FaqI GGGAC 2 cut(s) 74, 382
FatI CATG 5 cut(s) 360, 485, 498, 721, 805
FauI CCCGC 2 cut(s) 95, 1162
Fnu4HI GCNGC 4 cut(s) 441, 795, 852, 1153
FokI GGATG 2 cut(s) 398, 1134
FriOI GRGCYC 2 cut(s) 85, 943
Fsp4HI GCNGC 4 cut(s) 441, 795, 852, 1153
FspBI CTAG 2 cut(s) 665, 1043
GlaI GCGC 3 cut(s) 567, 798, 1168
GluI GCNGC 4 cut(s) 441, 795, 852, 1153
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 800
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 383
HgaI GACGC 3 cut(s) 148, 314, 478
HhaI GCGC 3 cut(s) 568, 799, 1169
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 5 cut(s) 364, 489, 502, 725, 809
Hin6I GCGC 3 cut(s) 566, 797, 1167
HinP1I GCGC 3 cut(s) 566, 797, 1167
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HindIII AAGCTT 4 cut(s) 455, 537, 704, 1229
HinfI GANTC 6 cut(s) 87, 902, 1190, 1199, 1211, 1255
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 293, 487
Hpy166II GTNNAC 3 cut(s) 130, 310, 1162
Hpy188I TCNGA 6 cut(s) 115, 466, 651, 922, 1189, 1315
Hpy188III TCNNGA 9 cut(s) 139, 373, 383, 665, 750, 780, 859, 1043, 1136
Hpy8I GTNNAC 3 cut(s) 130, 310, 1162
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 5 cut(s) 272, 424, 656, 907, 1142
HpyCH4III ACNGT 3 cut(s) 256, 836, 1066
HpyCH4IV ACGT 3 cut(s) 177, 736, 746
HpyCH4V TGCA 5 cut(s) 682, 809, 851, 893, 1011
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 712
HpyF3I CTNAG 6 cut(s) 293, 371, 800, 1148, 1192, 1314
HpySE526I ACGT 3 cut(s) 177, 736, 746
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 5 cut(s) 364, 489, 502, 725, 809
HspAI GCGC 3 cut(s) 566, 797, 1167
Kpn2I TCCGGA 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 1162
KspI CCGCGG 1 cut(s) 546
Kzo9I GATC 3 cut(s) 110, 301, 403
LmnI GCTCC 2 cut(s) 385, 938
Lsp1109I GCAGC 4 cut(s) 427, 806, 863, 1164
LweI GCATC 2 cut(s) 647, 1092
MaeI CTAG 2 cut(s) 665, 1043
MaeII ACGT 3 cut(s) 177, 736, 746
MaeIII GTNAC 1 cut(s) 747
MalI GATC 3 cut(s) 112, 303, 405
MboI GATC 3 cut(s) 110, 301, 403
MflI RGATCY 2 cut(s) 110, 301
MhlI GDGCHC 3 cut(s) 85, 943, 1277
MluCI AATT 5 cut(s) 355, 515, 933, 1103, 1323
MlyI GAGTC 2 cut(s) 1184, 1205
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 1013
MroI TCCGGA 1 cut(s) 382
MroXI GAANNNNTTC 5 cut(s) 506, 705, 927, 1038, 1131
MseI TTAA 4 cut(s) 149, 818, 1068, 1161
MslI CAYNNNNRTG 2 cut(s) 365, 497
MspA1I CMGCKG 2 cut(s) 545, 1196
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 473, 1013
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 2 cut(s) 545, 1169
MwoI GCNNNNNNNGC 2 cut(s) 165, 712
NcoI CCATGG 1 cut(s) 360
NdeII GATC 3 cut(s) 110, 301, 403
NlaIII CATG 5 cut(s) 364, 489, 502, 725, 809
NlaIV GGNNCC 4 cut(s) 123, 312, 509, 529
NmuCI GTSAC 1 cut(s) 747
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 1 cut(s) 809
PaeI GCATGC 1 cut(s) 809
PceI AGGCCT 1 cut(s) 231
PctI GAATGC 2 cut(s) 473, 1013
PdmI GAANNNNTTC 5 cut(s) 506, 705, 927, 1038, 1131
PfeI GAWTC 4 cut(s) 87, 902, 1199, 1255
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 4 cut(s) 442, 796, 853, 1154
PleI GAGTC 2 cut(s) 1184, 1205
PpsI GAGTC 2 cut(s) 1184, 1205
PpuMI RGGWCCY 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 943
Psp1406I AACGTT 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 510
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 4 cut(s) 123, 312, 509, 529
PspPI GGNCC 3 cut(s) 310, 375, 527
PspPPI RGGWCCY 1 cut(s) 527
PsuI RGATCY 2 cut(s) 110, 301
PvuII CAGCTG 1 cut(s) 1196
RseI CAYNNNNRTG 2 cut(s) 365, 497
SacI GAGCTC 1 cut(s) 943
SacII CCGCGG 1 cut(s) 546
SaqAI TTAA 4 cut(s) 149, 818, 1068, 1161
SatI GCNGC 4 cut(s) 441, 795, 852, 1153
Sau3AI GATC 3 cut(s) 110, 301, 403
Sau96I GGNCC 3 cut(s) 310, 375, 527
SchI GAGTC 2 cut(s) 1184, 1205
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 85, 943, 1277
SfaNI GCATC 2 cut(s) 647, 1092
Sfr303I CCGCGG 1 cut(s) 546
SgrBI CCGCGG 1 cut(s) 546
SinI GGWCC 3 cut(s) 310, 375, 527
SmiMI CAYNNNNRTG 2 cut(s) 365, 497
SmlI CTYRAG 3 cut(s) 444, 942, 1226
SmoI CTYRAG 3 cut(s) 444, 942, 1226
SphI GCATGC 1 cut(s) 809
Sse9I AATT 5 cut(s) 355, 515, 933, 1103, 1323
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 4 cut(s) 102, 543, 545, 1169
SspMI CTAG 2 cut(s) 665, 1043
SstI GAGCTC 1 cut(s) 943
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 3 cut(s) 360, 573, 597
TaaI ACNGT 3 cut(s) 256, 836, 1066
TaiI ACGT 3 cut(s) 180, 739, 749
TaqI TCGA 2 cut(s) 223, 1086
TasI AATT 5 cut(s) 355, 515, 933, 1103, 1323
TfiI GAWTC 4 cut(s) 87, 902, 1199, 1255
Tru1I TTAA 4 cut(s) 149, 818, 1068, 1161
Tru9I TTAA 4 cut(s) 149, 818, 1068, 1161
TscAI CASTG 5 cut(s) 54, 218, 301, 322, 1282
TseFI GTSAC 1 cut(s) 747
TseI GCWGC 4 cut(s) 440, 794, 851, 1152
Tsp45I GTSAC 1 cut(s) 747
TspDTI ATGAA 9 cut(s) 175, 291, 474, 515, 549, 710, 756, 1089, 1191
TspRI CASTG 5 cut(s) 54, 218, 301, 322, 1282
VpaK11BI GGWCC 3 cut(s) 310, 375, 527
XagI CCTNNNNNAGG 1 cut(s) 611
XbaI TCTAGA 2 cut(s) 664, 1042
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XmnI GAANNNNTTC 5 cut(s) 506, 705, 927, 1038, 1131
XspI CTAG 2 cut(s) 665, 1043
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.