Belongs to the SNF7 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62080 AT3G62080 |
| fragaria_vesca | FvH4_1g26150 FvH4_1g26150 |
| malus_domestica | MD09G1291400.v1.1 |
| prunus_persica | Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 |
| pyrus_communis | pycom09g19930 |
| rosa_chinensis | RchiOBHm_Chr3g0485641 |
| rosa_laevigata | RLG00000023138 |
| rosa_multiflora | Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870 |
| rosa_rugosa | Rorug03G0220400 |
| rosa_samantha | Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600 |
| rosa_wichuraiana | Rw3G024000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1167 |
| AclI | AACGTT | 1 cut(s) | 742 |
| AclWI | GGATC | 4 cut(s) | 72, 102, 309, 417 |
| AcoI | YGGCCR | 2 cut(s) | 100, 831 |
| AcsI | RAATTY | 1 cut(s) | 781 |
| AcuI | CTGAAG | 1 cut(s) | 948 |
| AcyI | GRCGYC | 1 cut(s) | 325 |
| AfaI | GTAC | 2 cut(s) | 269, 1067 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 88, 320, 321, 366, 510 |
| AjnI | CCWGG | 3 cut(s) | 333, 405, 516 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 596, 628 |
| AluBI | AGCT | 8 cut(s) | 446, 545, 712, 773, 947, 996, 1120, 1204 |
| AluI | AGCT | 8 cut(s) | 446, 545, 712, 773, 947, 996, 1120, 1204 |
| Alw21I | GWGCWC | 1 cut(s) | 949 |
| Alw26I | GTCTC | 4 cut(s) | 332, 419, 564, 603 |
| AlwI | GGATC | 4 cut(s) | 72, 102, 309, 417 |
| AoxI | GGCC | 4 cut(s) | 100, 172, 226, 831 |
| ApeKI | GCWGC | 1 cut(s) | 289 |
| ApoI | RAATTY | 1 cut(s) | 781 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 512, 711 |
| AspLEI | GCGC | 1 cut(s) | 805 |
| AspS9I | GGNCC | 2 cut(s) | 310, 378 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 188, 223, 290, 493 |
| AsuII | TTCGAA | 1 cut(s) | 1160 |
| AvaII | GGWCC | 2 cut(s) | 310, 378 |
| BaeGI | GKGCMC | 1 cut(s) | 1247 |
| BalI | TGGCCA | 2 cut(s) | 102, 833 |
| BanII | GRGCYC | 1 cut(s) | 949 |
| Bbv12I | GWGCWC | 1 cut(s) | 949 |
| BbvCI | CCTCAGC | 2 cut(s) | 152, 806 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 1 cut(s) | 941 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 878, 912 |
| BciT130I | CCWGG | 3 cut(s) | 335, 407, 518 |
| BcoDI | GTCTC | 4 cut(s) | 332, 419, 564, 603 |
| BfaI | CTAG | 3 cut(s) | 657, 671, 1220 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 1 cut(s) | 806 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 290 |
| BlsI | GCNGC | 1 cut(s) | 291 |
| Bme1390I | CCNGG | 3 cut(s) | 335, 407, 518 |
| Bme18I | GGWCC | 2 cut(s) | 310, 378 |
| BmgT120I | GGNCC | 2 cut(s) | 310, 378 |
| BmiI | GGNNCC | 4 cut(s) | 120, 312, 515, 535 |
| BmrFI | CCNGG | 3 cut(s) | 335, 407, 518 |
| BmrI | ACTGGG | 1 cut(s) | 124 |
| BmsI | GCATC | 1 cut(s) | 653 |
| BmuI | ACTGGG | 1 cut(s) | 124 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 213, 245 |
| BpmI | CTGGAG | 1 cut(s) | 157 |
| Bpu10I | CCTNAGC | 2 cut(s) | 152, 806 |
| Bpu14I | TTCGAA | 1 cut(s) | 1160 |
| BpuEI | CTTGAG | 2 cut(s) | 933, 1184 |
| BsaHI | GRCGYC | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 3 cut(s) | 333, 405, 603 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 370, 400, 1264, 1294 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 88, 320, 321, 366, 510 |
| Bse1I | ACTGG | 1 cut(s) | 119 |
| BseBI | CCWGG | 3 cut(s) | 335, 407, 518 |
| BseDI | CCNNGG | 3 cut(s) | 333, 405, 603 |
| BseGI | GGATG | 5 cut(s) | 55, 64, 933, 1087, 1216 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 88, 320, 321, 366, 510 |
| BseMII | CTCAG | 3 cut(s) | 166, 654, 797 |
| BseNI | ACTGG | 1 cut(s) | 119 |
| BseRI | GAGGAG | 6 cut(s) | 237, 378, 385, 546, 1025, 1115 |
| BseSI | GKGCMC | 1 cut(s) | 1247 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BseYI | CCCAGC | 1 cut(s) | 293 |
| BsgI | GTGCAG | 3 cut(s) | 534, 671, 1161 |
| Bsh1285I | CGRYCG | 1 cut(s) | 250 |
| BshFI | GGCC | 4 cut(s) | 102, 174, 228, 833 |
| BsiEI | CGRYCG | 1 cut(s) | 250 |
| BsiHKAI | GWGCWC | 1 cut(s) | 949 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 88, 320, 321, 366, 510 |
| BsmAI | GTCTC | 4 cut(s) | 332, 419, 564, 603 |
| BsmBI | CGTCTC | 2 cut(s) | 332, 419 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| BsnI | GGCC | 4 cut(s) | 102, 174, 228, 833 |
| Bsp119I | TTCGAA | 1 cut(s) | 1160 |
| Bsp1286I | GDGCHC | 2 cut(s) | 949, 1247 |
| Bsp1407I | TGTACA | 2 cut(s) | 267, 1065 |
| Bsp143I | GATC | 4 cut(s) | 77, 107, 301, 409 |
| BspACI | CCGC | 1 cut(s) | 1167 |
| BspANI | GGCC | 4 cut(s) | 102, 174, 228, 833 |
| BspCNI | CTCAG | 3 cut(s) | 165, 653, 798 |
| BspLI | GGNNCC | 4 cut(s) | 120, 312, 515, 535 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 4 cut(s) | 72, 102, 309, 417 |
| BspT104I | TTCGAA | 1 cut(s) | 1160 |
| BsrGI | TGTACA | 2 cut(s) | 267, 1065 |
| BsrI | ACTGG | 1 cut(s) | 119 |
| BssECI | CCNNGG | 3 cut(s) | 333, 405, 603 |
| BssMI | GATC | 4 cut(s) | 77, 107, 301, 409 |
| BssNI | GRCGYC | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 3 cut(s) | 335, 407, 518 |
| Bst4CI | ACNGT | 4 cut(s) | 251, 1072, 1139, 1249 |
| Bst6I | CTCTTC | 3 cut(s) | 137, 503, 1092 |
| BstACI | GRCGYC | 1 cut(s) | 325 |
| BstAUI | TGTACA | 2 cut(s) | 267, 1065 |
| BstBI | TTCGAA | 1 cut(s) | 1160 |
| BstC8I | GCNNGC | 2 cut(s) | 163, 586 |
| BstDEI | CTNAG | 3 cut(s) | 152, 640, 806 |
| BstF5I | GGATG | 5 cut(s) | 55, 64, 933, 1087, 1216 |
| BstH2I | RGCGCY | 1 cut(s) | 806 |
| BstHHI | GCGC | 1 cut(s) | 805 |
| BstKTI | GATC | 4 cut(s) | 80, 110, 304, 412 |
| BstMAI | GTCTC | 4 cut(s) | 332, 419, 564, 603 |
| BstMBI | GATC | 4 cut(s) | 77, 107, 301, 409 |
| BstMCI | CGRYCG | 1 cut(s) | 250 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 162, 171, 542, 817 |
| BstNI | CCWGG | 3 cut(s) | 335, 407, 518 |
| BstNSI | RCATGY | 1 cut(s) | 815 |
| BstSCI | CCNGG | 3 cut(s) | 333, 405, 516 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 1 cut(s) | 1247 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BstX2I | RGATCY | 3 cut(s) | 77, 107, 301 |
| BstYI | RGATCY | 3 cut(s) | 77, 107, 301 |
| BsuRI | GGCC | 4 cut(s) | 102, 174, 228, 833 |
| BtgZI | GCGATG | 1 cut(s) | 693 |
| BtsCI | GGATG | 5 cut(s) | 55, 64, 933, 1087, 1216 |
| BtsI | GCAGTG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 3 cut(s) | 315, 1144, 1245 |
| Cac8I | GCNNGC | 2 cut(s) | 163, 586 |
| CfoI | GCGC | 1 cut(s) | 805 |
| Cfr13I | GGNCC | 2 cut(s) | 310, 378 |
| CseI | GACGC | 1 cut(s) | 314 |
| Csp6I | GTAC | 2 cut(s) | 268, 1066 |
| CviAII | CATG | 3 cut(s) | 361, 505, 812 |
| CviQI | GTAC | 2 cut(s) | 268, 1066 |
| DdeI | CTNAG | 3 cut(s) | 152, 640, 806 |
| DpnI | GATC | 4 cut(s) | 79, 109, 303, 411 |
| DpnII | GATC | 4 cut(s) | 77, 107, 301, 409 |
| EaeI | YGGCCR | 2 cut(s) | 100, 831 |
| Eam1104I | CTCTTC | 3 cut(s) | 137, 503, 1092 |
| EarI | CTCTTC | 3 cut(s) | 137, 503, 1092 |
| Ecl136II | GAGCTC | 1 cut(s) | 947 |
| Eco130I | CCWWGG | 1 cut(s) | 603 |
| Eco147I | AGGCCT | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 949 |
| Eco47I | GGWCC | 2 cut(s) | 310, 378 |
| Eco53kI | GAGCTC | 1 cut(s) | 947 |
| Eco57I | CTGAAG | 1 cut(s) | 948 |
| EcoICRI | GAGCTC | 1 cut(s) | 947 |
| EcoRI | GAATTC | 1 cut(s) | 781 |
| EcoRII | CCWGG | 3 cut(s) | 333, 405, 516 |
| EcoT14I | CCWWGG | 1 cut(s) | 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 949 |
| ErhI | CCWWGG | 1 cut(s) | 603 |
| Esp3I | CGTCTC | 2 cut(s) | 332, 419 |
| FaeI | CATG | 3 cut(s) | 364, 508, 815 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 596, 628 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 3 cut(s) | 360, 504, 811 |
| FauNDI | CATATG | 1 cut(s) | 524 |
| Fnu4HI | GCNGC | 1 cut(s) | 290 |
| FokI | GGATG | 5 cut(s) | 62, 71, 920, 1094, 1223 |
| FriOI | GRGCYC | 1 cut(s) | 949 |
| Fsp4HI | GCNGC | 1 cut(s) | 290 |
| FspBI | CTAG | 3 cut(s) | 657, 671, 1220 |
| GlaI | GCGC | 1 cut(s) | 804 |
| GluI | GCNGC | 1 cut(s) | 290 |
| GsaI | CCCAGC | 1 cut(s) | 297 |
| GsuI | CTGGAG | 1 cut(s) | 157 |
| HaeII | RGCGCY | 1 cut(s) | 806 |
| HaeIII | GGCC | 4 cut(s) | 102, 174, 228, 833 |
| HgaI | GACGC | 1 cut(s) | 314 |
| HhaI | GCGC | 1 cut(s) | 805 |
| Hin1I | GRCGYC | 1 cut(s) | 325 |
| Hin1II | CATG | 3 cut(s) | 364, 508, 815 |
| Hin6I | GCGC | 1 cut(s) | 803 |
| HinP1I | GCGC | 1 cut(s) | 803 |
| HincII | GTYRAC | 1 cut(s) | 1135 |
| HindII | GTYRAC | 1 cut(s) | 1135 |
| HindIII | AAGCTT | 3 cut(s) | 543, 710, 1202 |
| HinfI | GANTC | 5 cut(s) | 84, 908, 1052, 1172, 1184 |
| HpaI | GTTAAC | 1 cut(s) | 1135 |
| HphI | GGTGA | 5 cut(s) | 40, 188, 223, 290, 493 |
| Hpy166II | GTNNAC | 3 cut(s) | 310, 1068, 1135 |
| Hpy188I | TCNGA | 3 cut(s) | 112, 472, 928 |
| Hpy188III | TCNNGA | 7 cut(s) | 81, 136, 671, 756, 786, 865, 1108 |
| Hpy8I | GTNNAC | 3 cut(s) | 310, 1068, 1135 |
| HpyAV | CCTTC | 4 cut(s) | 269, 574, 913, 1082 |
| HpyCH4III | ACNGT | 4 cut(s) | 251, 1072, 1139, 1249 |
| HpyCH4IV | ACGT | 2 cut(s) | 742, 752 |
| HpyCH4V | TGCA | 7 cut(s) | 320, 495, 551, 688, 857, 899, 1142 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 162, 171, 542, 817 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 640, 806 |
| HpySE526I | ACGT | 2 cut(s) | 742, 752 |
| Hsp92I | GRCGYC | 1 cut(s) | 325 |
| Hsp92II | CATG | 3 cut(s) | 364, 508, 815 |
| HspAI | GCGC | 1 cut(s) | 803 |
| KspAI | GTTAAC | 1 cut(s) | 1135 |
| Kzo9I | GATC | 4 cut(s) | 77, 107, 301, 409 |
| LmnI | GCTCC | 3 cut(s) | 372, 533, 944 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| LweI | GCATC | 1 cut(s) | 653 |
| MaeI | CTAG | 3 cut(s) | 657, 671, 1220 |
| MaeII | ACGT | 2 cut(s) | 742, 752 |
| MaeIII | GTNAC | 1 cut(s) | 499 |
| MalI | GATC | 4 cut(s) | 79, 109, 303, 411 |
| MboI | GATC | 4 cut(s) | 77, 107, 301, 409 |
| MboII | GAAGA | 8 cut(s) | 17, 124, 480, 520, 639, 992, 1097, 1109 |
| MflI | RGATCY | 3 cut(s) | 77, 107, 301 |
| MhlI | GDGCHC | 2 cut(s) | 949, 1247 |
| MlsI | TGGCCA | 2 cut(s) | 102, 833 |
| MluCI | AATT | 5 cut(s) | 781, 850, 939, 1005, 1112 |
| MluNI | TGGCCA | 2 cut(s) | 102, 833 |
| MlyI | GAGTC | 1 cut(s) | 1178 |
| MmeI | TCCRAC | 2 cut(s) | 135, 1012 |
| Mox20I | TGGCCA | 2 cut(s) | 102, 833 |
| MroXI | GAANNNNTTC | 2 cut(s) | 512, 711 |
| MscI | TGGCCA | 2 cut(s) | 102, 833 |
| MseI | TTAA | 4 cut(s) | 146, 726, 824, 1134 |
| MslI | CAYNNNNRTG | 1 cut(s) | 490 |
| Msp20I | TGGCCA | 2 cut(s) | 102, 833 |
| MspA1I | CMGCKG | 1 cut(s) | 1169 |
| MspR9I | CCNGG | 3 cut(s) | 335, 407, 518 |
| MvaI | CCWGG | 3 cut(s) | 335, 407, 518 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 162, 171, 542, 817 |
| NdeI | CATATG | 1 cut(s) | 524 |
| NdeII | GATC | 4 cut(s) | 77, 107, 301, 409 |
| NlaIII | CATG | 3 cut(s) | 364, 508, 815 |
| NlaIV | GGNNCC | 4 cut(s) | 120, 312, 515, 535 |
| NmeAIII | GCCGAG | 1 cut(s) | 150 |
| NmuCI | GTSAC | 1 cut(s) | 499 |
| NspI | RCATGY | 1 cut(s) | 815 |
| NspV | TTCGAA | 1 cut(s) | 1160 |
| PceI | AGGCCT | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 2 cut(s) | 512, 711 |
| PfeI | GAWTC | 4 cut(s) | 84, 908, 1052, 1172 |
| PflFI | GACNNNGTC | 1 cut(s) | 251 |
| PfoI | TCCNGGA | 1 cut(s) | 516 |
| PkrI | GCNGC | 1 cut(s) | 291 |
| PleI | GAGTC | 1 cut(s) | 1178 |
| PpsI | GAGTC | 1 cut(s) | 1178 |
| Psp124BI | GAGCTC | 1 cut(s) | 949 |
| Psp1406I | AACGTT | 1 cut(s) | 742 |
| Psp6I | CCWGG | 3 cut(s) | 333, 405, 516 |
| PspFI | CCCAGC | 1 cut(s) | 293 |
| PspGI | CCWGG | 3 cut(s) | 333, 405, 516 |
| PspN4I | GGNNCC | 4 cut(s) | 120, 312, 515, 535 |
| PspPI | GGNCC | 2 cut(s) | 310, 378 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 3 cut(s) | 77, 107, 301 |
| PsyI | GACNNNGTC | 1 cut(s) | 251 |
| RsaI | GTAC | 2 cut(s) | 269, 1067 |
| RsaNI | GTAC | 2 cut(s) | 268, 1066 |
| RseI | CAYNNNNRTG | 1 cut(s) | 490 |
| SacI | GAGCTC | 1 cut(s) | 949 |
| SaqAI | TTAA | 4 cut(s) | 146, 726, 824, 1134 |
| SatI | GCNGC | 1 cut(s) | 290 |
| Sau3AI | GATC | 4 cut(s) | 77, 107, 301, 409 |
| Sau96I | GGNCC | 2 cut(s) | 310, 378 |
| SchI | GAGTC | 1 cut(s) | 1178 |
| ScrFI | CCNGG | 3 cut(s) | 335, 407, 518 |
| SduI | GDGCHC | 2 cut(s) | 949, 1247 |
| SfaNI | GCATC | 1 cut(s) | 653 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfuI | TTCGAA | 1 cut(s) | 1160 |
| SinI | GGWCC | 2 cut(s) | 310, 378 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 490 |
| SmlI | CTYRAG | 2 cut(s) | 948, 1199 |
| SmoI | CTYRAG | 2 cut(s) | 948, 1199 |
| Sse9I | AATT | 5 cut(s) | 781, 850, 939, 1005, 1112 |
| SseBI | AGGCCT | 1 cut(s) | 228 |
| SsiI | CCGC | 1 cut(s) | 1167 |
| SspMI | CTAG | 3 cut(s) | 657, 671, 1220 |
| SstI | GAGCTC | 1 cut(s) | 949 |
| StuI | AGGCCT | 1 cut(s) | 228 |
| StyD4I | CCNGG | 3 cut(s) | 333, 405, 516 |
| StyI | CCWWGG | 1 cut(s) | 603 |
| TaaI | ACNGT | 4 cut(s) | 251, 1072, 1139, 1249 |
| TaiI | ACGT | 2 cut(s) | 745, 755 |
| TaqI | TCGA | 4 cut(s) | 220, 246, 888, 1160 |
| TasI | AATT | 5 cut(s) | 781, 850, 939, 1005, 1112 |
| TatI | WGTACW | 2 cut(s) | 267, 1065 |
| TfiI | GAWTC | 4 cut(s) | 84, 908, 1052, 1172 |
| Tru1I | TTAA | 4 cut(s) | 146, 726, 824, 1134 |
| Tru9I | TTAA | 4 cut(s) | 146, 726, 824, 1134 |
| TscAI | CASTG | 3 cut(s) | 322, 1144, 1252 |
| TseFI | GTSAC | 1 cut(s) | 499 |
| TseI | GCWGC | 1 cut(s) | 289 |
| Tsp45I | GTSAC | 1 cut(s) | 499 |
| TspDTI | ATGAA | 7 cut(s) | 78, 169, 288, 521, 555, 604, 1098 |
| TspGWI | ACGGA | 1 cut(s) | 640 |
| TspRI | CASTG | 3 cut(s) | 322, 1144, 1252 |
| Tth111I | GACNNNGTC | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 2 cut(s) | 310, 378 |
| XapI | RAATTY | 1 cut(s) | 781 |
| XbaI | TCTAGA | 1 cut(s) | 670 |
| XceI | RCATGY | 1 cut(s) | 815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 524 |
| XmnI | GAANNNNTTC | 2 cut(s) | 512, 711 |
| XspI | CTAG | 3 cut(s) | 657, 671, 1220 |