Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Forward (+)

34458676 .. 34459146

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTGCAGACCCCACTTCGGGCTTCTCTCCCGATTTTCGGAAGAGTCACCAGCTCCGTGCTTGGCCTTGCTTCATCAACCCCAACTCCTCGGCTTTTCGTGTCTCATGAGCGTCTTGTTCTTACCCCACTTCTCAAGGATAAAGCTGTTCAAATTGTGGGAGGTCCGTCGGAATGCCATTGGGATTCTTGGTGCATTGTCACCATGAAGAGGTTCCGGGACTTGTGTGGAGGACCCTTTGAAGGTTCTGGGAGAATATTTTTGGGGACCAGGGACCAAATACTCAACAACGACAAGAAGTGTGTGATGGTGGACCGGAAGTTGAAGTTAGCATACGTTACTCTACGATCTGCTACGTTTATATCACATGCATTGGATATTATCTTTTATTTATGGAGATTCGGAATGCTAAGATACTTGAGGCCCGGGGATTTTTTAGTACTGTTTTCTTTGTATGGAAGGAGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

156

Amino Acids

17.8

Weight (kDa)

10.1

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	5 cut(s)	18, 19, 38, 210, 242
AgsI	TTSAA	3 cut(s)	152, 242, 325
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	2 cut(s)	54, 146
AluI	AGCT	2 cut(s)	54, 146
Alw26I	GTCTC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	64, 422
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	6 cut(s)	164, 233, 267, 274, 313, 423
AsuC2I	CCSGG	3 cut(s)	218, 426, 427
AsuHPI	GGTGA	2 cut(s)	40, 193
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	5 cut(s)	164, 233, 267, 274, 313
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	271
BcnI	CCSGG	3 cut(s)	218, 426, 427
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	469
BmcAI	AGTACT	1 cut(s)	441
Bme1390I	CCNGG	4 cut(s)	218, 271, 426, 427
Bme18I	GGWCC	5 cut(s)	164, 233, 267, 274, 313
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	6 cut(s)	164, 233, 267, 274, 313, 423
BmiI	GGNNCC	4 cut(s)	215, 235, 268, 275
BmrFI	CCNGG	4 cut(s)	218, 271, 426, 427
BpuEI	CTTGAG	2 cut(s)	119, 439
BpuMI	CCSGG	3 cut(s)	218, 426, 427
BsaJI	CCNNGG	4 cut(s)	89, 270, 425, 426
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 19, 38, 210, 242
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	89, 270, 425, 426
BseLI	CCNNNNNNNGG	5 cut(s)	18, 19, 38, 210, 242
BseRI	GAGGAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	66, 424
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	217, 316, 426
BslFI	GGGAC	3 cut(s)	233, 280, 287
BslI	CCNNNNNNNGG	5 cut(s)	18, 19, 38, 210, 242
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	3 cut(s)	233, 280, 287
BsmI	GAATGC	2 cut(s)	179, 411
BsnI	GGCC	2 cut(s)	66, 424
BsoBI	CYCGRG	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	66, 424
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	4 cut(s)	215, 235, 268, 275
BssECI	CCNNGG	4 cut(s)	89, 270, 425, 426
BssMI	GATC	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	2 cut(s)	37, 203
BstDEI	CTNAG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	216, 269, 424, 425
BsuRI	GGCC	2 cut(s)	66, 424
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	6 cut(s)	164, 233, 267, 274, 313, 423
Cfr9I	CCCGGG	1 cut(s)	425
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	107, 205, 368
CviJI	RGCY	6 cut(s)	23, 54, 66, 94, 146, 424
CviKI_1	RGCY	6 cut(s)	23, 54, 66, 94, 146, 424
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	37, 203
EarI	CTCTTC	2 cut(s)	37, 203
Eco47I	GGWCC	5 cut(s)	164, 233, 267, 274, 313
Eco88I	CYCGRG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	3 cut(s)	110, 208, 371
FaiI	YATR	7 cut(s)	108, 206, 334, 362, 369, 394, 456
FaqI	GGGAC	3 cut(s)	233, 280, 287
FatI	CATG	3 cut(s)	106, 204, 367
FspBI	CTAG	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	66, 424
HapII	CCGG	3 cut(s)	217, 316, 426
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	110, 208, 371
HinfI	GANTC	4 cut(s)	45, 185, 399, 465
HpaII	CCGG	3 cut(s)	217, 316, 426
HphI	GGTGA	2 cut(s)	40, 193
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	41, 172, 404
Hpy188III	TCNNGA	2 cut(s)	31, 107
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	236, 453
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	2 cut(s)	336, 356
HpyCH4V	TGCA	3 cut(s)	7, 195, 371
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	336, 356
Hsp92II	CATG	3 cut(s)	110, 208, 371
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	64, 230, 234, 256, 283, 329, 439
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	2 cut(s)	336, 356
MaeIII	GTNAC	3 cut(s)	46, 199, 337
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	2 cut(s)	54, 220
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	99, 155, 204, 224, 414
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	212
MspI	CCGG	3 cut(s)	217, 316, 426
MspR9I	CCNGG	4 cut(s)	218, 271, 426, 427
Mva1269I	GAATGC	2 cut(s)	179, 411
MvaI	CCWGG	1 cut(s)	271
NciI	CCSGG	3 cut(s)	218, 426, 427
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	3 cut(s)	110, 208, 371
NlaIV	GGNNCC	4 cut(s)	215, 235, 268, 275
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	46, 199
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	371
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	2 cut(s)	179, 411
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	185, 399, 465
PfoI	TCCNGGA	1 cut(s)	216
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	215, 235, 268, 275
PspPI	GGNCC	6 cut(s)	164, 233, 267, 274, 313, 423
PspPPI	RGGWCCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	6 cut(s)	164, 233, 267, 274, 313, 423
ScaI	AGTACT	1 cut(s)	441
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	4 cut(s)	218, 271, 426, 427
SetI	ASST	7 cut(s)	56, 148, 166, 215, 247, 339, 359
SinI	GGWCC	5 cut(s)	164, 233, 267, 274, 313
SmaI	CCCGGG	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	134, 418
SmoI	CTYRAG	2 cut(s)	134, 418
Sse9I	AATT	1 cut(s)	153
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	216, 269, 424, 425
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	2 cut(s)	339, 359
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	3 cut(s)	185, 399, 465
TseFI	GTSAC	2 cut(s)	46, 199
Tsp45I	GTSAC	2 cut(s)	46, 199
TspDTI	ATGAA	2 cut(s)	63, 221
TspGWI	ACGGA	2 cut(s)	46, 156
TspMI	CCCGGG	1 cut(s)	425
VpaK11BI	GGWCC	5 cut(s)	164, 233, 267, 274, 313
XceI	RCATGY	1 cut(s)	371
XmaI	CCCGGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	469
ZrmI	AGTACT	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.