Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Reverse (-)

31552076 .. 31555052

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCCTCGACGACGTTTTGGTGAAATTGTGCCCACTGTGGATGTTGCGGACCCCACTTCGGGCCGTCTCTCCCAGATTTTCAGAAGAGTCACCAGCTCCGTGCTTGGCCTTGCTTCATCAAACCCAACTCCTCAGCTTCTCGTGTCCCATGAGCGTCTCGTTCTTACCCCACTTCTCAAGGATAAAGCTGTTCAAATTGTGGAAGGTTTGTCGGAATGCCATTGGAATTCTTGGCGCATTGTCACCATGAAGAGGTTCCGGGACTTGTGTGGAGGGCCCTTTGAAGGTTCGGCAATCTTGTCTCACTTGTCTGCGCAAGGCAAGGCGCGGTATCTCTCACTTCCCAACAGGGGAGATTTATTCGAGGGTGTGAAAGTTTCCATTTCAGCATCTTCTGTTCCTAGTGTTTCAAGTTTAGATCGTGATGTTTTGCACTTGAATTGGACAAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGCCGCTGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCCGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGGGAGTTGAAGTTGGCGAATGAGAGTAGAGAAAAATGTGCAAACTTCTTGAACAGAGTGATGGAAGTGCTTGATTTTATCACAAATGCTGAATTGACAAAGAAGGTTTCTGAAGCCATCCAAATTGGAGCTAAAGCTATAAAGGAAAATAGGATTAGTATGGAAGAAGTCGAAGATAGCCTCCAAGAAATTGAGGAGAGCATTGATACATTAAAGCAATTAGAAAATGTTATAGAATCAACCCCCCTGTACTCAGTTACGGATGATGAAGAAAATATCGAAGAGGAGTTCAAGAAACTAGAACTGGATATTGGACTTGAAAACGATCACAAACCAATCCAGGAAACCGAGATTAATAATGCAGTAGAAACGGACATTTCAGAATCTGCTGAAGCGTTGATAGATTCTTTATCAAATCTCAAGCTCGTGGATGGTGGTCAAGCAAGGATACCAGCAGTTCACAGCACTGCCTCGACAGCAAGAAACAACAAAACAAAAGGTCCTGAGCTTGCAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

360

Amino Acids

40.05

Weight (kDa)

5.55

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	144 - 305	1.3e-14	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AccII	CGCG	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	4 cut(s)	47, 328, 484, 487
AclI	AACGTT	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	693, 972
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	5 cut(s)	58, 59, 252, 284, 350
AgsI	TTSAA	9 cut(s)	194, 284, 411, 439, 461, 571, 613, 853, 881
AjnI	CCWGG	1 cut(s)	900
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	8 cut(s)	96, 136, 188, 518, 692, 698, 985, 1069
AluI	AGCT	8 cut(s)	96, 136, 188, 518, 692, 698, 985, 1069
Alw26I	GTCTC	4 cut(s)	71, 161, 306, 448
AlwNI	CAGNNNCTG	1 cut(s)	947
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	3 cut(s)	61, 106, 275
ApaI	GGGCCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	226
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	237, 316, 328
AspS9I	GGNCC	5 cut(s)	49, 61, 275, 276, 1061
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	32, 82, 235
AvaII	GGWCC	2 cut(s)	49, 1061
BaeGI	GKGCMC	2 cut(s)	33, 279
BanII	GRGCYC	1 cut(s)	279
BauI	CACGAG	2 cut(s)	140, 986
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	3 cut(s)	616, 686, 986
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	902
BciVI	GTATCC	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	71, 161, 306, 448
BfaI	CTAG	2 cut(s)	402, 860
BfuI	GTATCC	1 cut(s)	1002
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	260, 902
Bme18I	GGWCC	2 cut(s)	49, 1061
BmgT120I	GGNCC	5 cut(s)	49, 61, 275, 276, 1061
BmiI	GGNNCC	3 cut(s)	51, 257, 277
BmrFI	CCNGG	2 cut(s)	260, 902
BmsI	GCATC	1 cut(s)	398
Bpu10I	CCTNAGC	2 cut(s)	132, 1065
BpuEI	CTTGAG	2 cut(s)	161, 965
BpuMI	CCSGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 59, 252, 284, 350
Bse1I	ACTGG	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	902
BseGI	GGATG	4 cut(s)	46, 678, 829, 997
BseLI	CCNNNNNNNGG	5 cut(s)	58, 59, 252, 284, 350
BseMII	CTCAG	4 cut(s)	146, 542, 828, 1056
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	3 cut(s)	120, 770, 860
BseSI	GKGCMC	2 cut(s)	33, 279
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	63, 108, 277
BsiSI	CCGG	2 cut(s)	259, 531
BslFI	GGGAC	2 cut(s)	130, 275
BslI	CCNNNNNNNGG	5 cut(s)	58, 59, 252, 284, 350
BsmAI	GTCTC	4 cut(s)	71, 161, 306, 448
BsmBI	CGTCTC	2 cut(s)	71, 161
BsmFI	GGGAC	2 cut(s)	130, 275
BsmI	GAATGC	2 cut(s)	221, 526
BsnI	GGCC	3 cut(s)	63, 108, 277
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	33, 279
Bsp13I	TCCGGA	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	418, 886
BspACI	CCGC	4 cut(s)	47, 328, 484, 487
BspANI	GGCC	3 cut(s)	63, 108, 277
BspCNI	CTCAG	4 cut(s)	145, 543, 827, 1057
BspEI	TCCGGA	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	51, 257, 277
BsrI	ACTGG	1 cut(s)	870
BssMI	GATC	2 cut(s)	418, 886
BssSI	CACGAG	2 cut(s)	140, 986
Bst2BI	CACGAG	2 cut(s)	140, 986
Bst2UI	CCWGG	1 cut(s)	902
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	3 cut(s)	79, 245, 837
BstC8I	GCNNGC	2 cut(s)	558, 1071
BstDEI	CTNAG	4 cut(s)	132, 551, 814, 1065
BstF5I	GGATG	4 cut(s)	46, 678, 829, 997
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	3 cut(s)	237, 316, 328
BstKTI	GATC	2 cut(s)	421, 889
BstMAI	GTCTC	4 cut(s)	71, 161, 306, 448
BstMBI	GATC	2 cut(s)	418, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	1037
BstNI	CCWGG	1 cut(s)	902
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	258, 900
BstSLI	GKGCMC	2 cut(s)	33, 279
BstUI	CGCG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	3 cut(s)	63, 108, 277
BtsCI	GGATG	4 cut(s)	46, 678, 829, 997
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	2 cut(s)	33, 1026
Cac8I	GCNNGC	2 cut(s)	558, 1071
CaiI	CAGNNNCTG	1 cut(s)	947
CfoI	GCGC	3 cut(s)	237, 316, 328
Cfr13I	GGNCC	5 cut(s)	49, 61, 275, 276, 1061
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	811
CviAII	CATG	3 cut(s)	149, 247, 557
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	4 cut(s)	132, 551, 814, 1065
DpnI	GATC	2 cut(s)	420, 888
DpnII	GATC	2 cut(s)	418, 886
Eam1104I	CTCTTC	3 cut(s)	79, 245, 837
EarI	CTCTTC	3 cut(s)	79, 245, 837
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	49, 1061
Eco57I	CTGAAG	2 cut(s)	693, 972
EcoO109I	RGGNCCY	3 cut(s)	275, 276, 1061
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	900
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	2 cut(s)	71, 161
FaeI	CATG	3 cut(s)	152, 250, 560
FaiI	YATR	6 cut(s)	150, 248, 558, 701, 722, 794
FaqI	GGGAC	2 cut(s)	130, 275
FatI	CATG	3 cut(s)	148, 246, 556
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	4 cut(s)	53, 665, 836, 1004
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	2 cut(s)	402, 860
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	3 cut(s)	236, 315, 327
GluI	GCNGC	1 cut(s)	487
HaeIII	GGCC	3 cut(s)	63, 108, 277
HapII	CCGG	2 cut(s)	259, 531
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	3 cut(s)	237, 316, 328
Hin1II	CATG	3 cut(s)	152, 250, 560
Hin6I	GCGC	3 cut(s)	235, 314, 326
HinP1I	GCGC	3 cut(s)	235, 314, 326
HinfI	GANTC	4 cut(s)	87, 797, 944, 965
HpaII	CCGG	2 cut(s)	259, 531
HphI	GGTGA	3 cut(s)	32, 82, 235
Hpy166II	GTNNAC	1 cut(s)	1021
Hpy188I	TCNGA	5 cut(s)	83, 214, 552, 673, 943
Hpy188III	TCNNGA	5 cut(s)	422, 531, 610, 853, 1064
Hpy8I	GTNNAC	1 cut(s)	1021
Hpy99I	CGWCG	2 cut(s)	12, 15
HpyAV	CCTTC	3 cut(s)	197, 278, 658
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	13, 497
HpyCH4V	TGCA	6 cut(s)	433, 526, 560, 602, 923, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1037
HpyF3I	CTNAG	4 cut(s)	132, 551, 814, 1065
HpySE526I	ACGT	2 cut(s)	13, 497
Hsp92II	CATG	3 cut(s)	152, 250, 560
HspAI	GCGC	3 cut(s)	235, 314, 326
Kpn2I	TCCGGA	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	418, 886
LmnI	GCTCC	2 cut(s)	101, 689
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	402, 860
MaeII	ACGT	2 cut(s)	13, 497
MaeIII	GTNAC	3 cut(s)	88, 241, 817
MalI	GATC	2 cut(s)	420, 888
MboI	GATC	2 cut(s)	418, 886
MboII	GAAGA	7 cut(s)	96, 262, 384, 737, 746, 842, 854
MhlI	GDGCHC	2 cut(s)	33, 279
MluCI	AATT	9 cut(s)	24, 195, 226, 439, 477, 653, 684, 750, 779
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	3 cut(s)	500, 773, 915
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	2 cut(s)	259, 531
MspR9I	CCNGG	2 cut(s)	260, 902
Mva1269I	GAATGC	2 cut(s)	221, 526
MvaI	CCWGG	1 cut(s)	902
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	1037
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	418, 886
NlaIII	CATG	3 cut(s)	152, 250, 560
NlaIV	GGNNCC	3 cut(s)	51, 257, 277
NmuCI	GTSAC	2 cut(s)	88, 241
NsbI	TGCGCA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	560
PctI	GAATGC	2 cut(s)	221, 526
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	797, 944, 965
PfoI	TCCNGGA	2 cut(s)	258, 900
PkrI	GCNGC	1 cut(s)	488
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	1061
PshBI	ATTAAT	1 cut(s)	915
Psp1406I	AACGTT	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	1061
Psp6I	CCWGG	1 cut(s)	900
PspGI	CCWGG	1 cut(s)	900
PspN4I	GGNNCC	3 cut(s)	51, 257, 277
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	5 cut(s)	49, 61, 275, 276, 1061
PspPPI	RGGWCCY	1 cut(s)	1061
PstNI	CAGNNNCTG	1 cut(s)	947
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
SaqAI	TTAA	3 cut(s)	500, 773, 915
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	2 cut(s)	418, 886
Sau96I	GGNCC	5 cut(s)	49, 61, 275, 276, 1061
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	260, 902
SduI	GDGCHC	2 cut(s)	33, 279
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	2 cut(s)	49, 1061
SmlI	CTYRAG	2 cut(s)	176, 980
SmoI	CTYRAG	2 cut(s)	176, 980
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	9 cut(s)	24, 195, 226, 439, 477, 653, 684, 750, 779
SsiI	CCGC	4 cut(s)	47, 328, 484, 487
SspMI	CTAG	2 cut(s)	402, 860
StyD4I	CCNGG	2 cut(s)	258, 900
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	16, 500
TaqI	TCGA	5 cut(s)	7, 363, 732, 840, 1034
TasI	AATT	9 cut(s)	24, 195, 226, 439, 477, 653, 684, 750, 779
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	3 cut(s)	797, 944, 965
Tru1I	TTAA	3 cut(s)	500, 773, 915
Tru9I	TTAA	3 cut(s)	500, 773, 915
TscAI	CASTG	2 cut(s)	40, 1033
TseFI	GTSAC	2 cut(s)	88, 241
Tsp45I	GTSAC	2 cut(s)	88, 241
TspDTI	ATGAA	3 cut(s)	105, 263, 843
TspGWI	ACGGA	3 cut(s)	88, 836, 947
TspRI	CASTG	2 cut(s)	40, 1033
VpaK11BI	GGWCC	2 cut(s)	49, 1061
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	402, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.