Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Forward (+)

18720259 .. 18722885

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTCGTTTTGTTTGAATTCTGAGGAGGGTGAAGAGGAGCAAAGCAGAAGCGGAAAAATGGAAGAGAGCGAGAAATTGAGAGAGTTGATCAGGAAGGAAGTTCAAGATTGGGATGACGAATTGGTTTGCAGAGCCCGATTCAAAGCCTTCAGTGGCCAACGATCCGATTGGGAACCCATTTACCTCTTCTGGAGAAACTTGATCCTCACCATCGCTCGGCAATTAGGCCTCTTCATCATTCAACCCTCTCACCTAAAGACCCATTGGTTCAATCGAGGAGGACTCACTCCCTTATGCCTCGACGACGTTTTGTTTGTGATGTACAATGAAGGTGACATTGTGCCCACTGTGGATGTTGCGGACCCCACTTCGGGTCGTCTCTCCCAGATTTTCAGAAGAGTCACCAGCTCCGTGCTTAGCCTTGCTTCATCAACCCCAACTCCTCAGCTTCTCGTGTCCCATGAGCGTCTCGTTCTTACCCCACTTCTCAAGGATAAAGCTGTTCAAATTGTGGAAGGTTTGTTGGAATGCCATTGGAATTCTTGGTGCATTGTCACCATGAAGAGGTTTCGGGACTTGTGTGGAGGACCCTTTGAAGGTTCTGCAATCTTGTCTCACTTGTCTGCGCAAGGGAAGGCGCGGTATCTCTCGTTTCCCAACAGGGGAGACTTATTCGAGGGTGTGAAAGTTTCCATTTCAGCATCTTCTGTTCCTAGTGTTTCAAGTTTAGATCGTGATGTTTTGCACTTGAATTGGACAAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGCCGCTGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCCGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGGGAGTTGAAGTTGGCGAATGAGAGTAGAGAAAAATGTGCAAACTTCTTGAACAGAGTTGTGGAAGTTCTTGATTTTATCGCAAATGCTGAATTGACAAAGAAGGTTTCTGAAGCCATCCAAATTGGAGCTAAAGCTATAAAGGAAAATAGGATTAGTATGGAAGAAGTCGAAGATAGCCTACAAGAAATTGAGGAGAGCATCGATACATTAAAGCAATTAGAAAATGTTATAGAATCAACCCCCCTGTACTCAGTTACGGATGATGAAGAAAATATCGAAGAGGAGTTCAAGAAACTAGAACTGGATATTGGACTTGAAAACCATCACGAACCAATCCAGGAAACCGAGATTAATAATGCAGTAGAAACAGACATTTCAGAATCTGCTGAAGTGTTGATAGATTCTTTATCAAATCTCAAGCTCGTGGATGGTGGTCAAGCAAGGATACCAGCAGTTCACAGCACTGCCTCGACAGCAAGAAACAACAAAACAAAAGGTCCTGAGCTTGCAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

465

Amino Acids

52.3

Weight (kDa)

5.18

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_CHMP7_1st	PF25880	34 - 115	8.4e-24	CHMP7 N-terminal winged helix domain
Snf7	PF03357	248 - 406	9.3e-15	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	627
AccII	CGCG	1 cut(s)	640
AccIII	TCCGGA	1 cut(s)	842
AciI	CCGC	5 cut(s)	51, 359, 640, 796, 799
AclI	AACGTT	1 cut(s)	809
AclWI	GGATC	2 cut(s)	156, 196
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	16, 538
AcuI	CTGAAG	3 cut(s)	133, 1005, 1284
AfaI	GTAC	2 cut(s)	323, 1124
AfiI	CCNNNNNNNGG	6 cut(s)	216, 370, 371, 564, 596, 662
AjnI	CCWGG	1 cut(s)	1212
AjuI	GAANNNNNNNTTGG	2 cut(s)	1167, 1199
AluBI	AGCT	8 cut(s)	408, 448, 500, 830, 1004, 1010, 1297, 1381
AluI	AGCT	8 cut(s)	408, 448, 500, 830, 1004, 1010, 1297, 1381
Alw26I	GTCTC	5 cut(s)	383, 473, 618, 660, 760
AlwI	GGATC	2 cut(s)	156, 196
AlwNI	CAGNNNCTG	1 cut(s)	1259
Aor13HI	TCCGGA	1 cut(s)	842
AoxI	GGCC	2 cut(s)	154, 226
ApoI	RAATTY	2 cut(s)	16, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AseI	ATTAAT	1 cut(s)	1227
AspLEI	GCGC	2 cut(s)	628, 640
AspS9I	GGNCC	3 cut(s)	361, 587, 1373
AsuHPI	GGTGA	6 cut(s)	41, 199, 242, 344, 394, 547
AvaII	GGWCC	3 cut(s)	361, 587, 1373
BaeGI	GKGCMC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	1038, 1070
BauI	CACGAG	2 cut(s)	452, 1298
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	4 cut(s)	218, 998, 1206, 1298
BciT130I	CCWGG	1 cut(s)	1214
BciVI	GTATCC	1 cut(s)	1314
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	5 cut(s)	383, 473, 618, 660, 760
BfaI	CTAG	2 cut(s)	714, 1172
BfuI	GTATCC	1 cut(s)	1314
BisI	GCNGC	1 cut(s)	799
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	800
Bme1390I	CCNGG	1 cut(s)	1214
Bme18I	GGWCC	3 cut(s)	361, 587, 1373
BmgT120I	GGNCC	3 cut(s)	361, 587, 1373
BmiI	GGNNCC	3 cut(s)	174, 363, 589
BmrFI	CCNGG	1 cut(s)	1214
BmsI	GCATC	2 cut(s)	710, 1083
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	2 cut(s)	444, 1377
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	473, 1277
Bsa29I	ATCGAT	1 cut(s)	1077
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	4 cut(s)	424, 454, 869, 899
Bsc4I	CCNNNNNNNGG	6 cut(s)	216, 370, 371, 564, 596, 662
Bse1I	ACTGG	1 cut(s)	1182
BseAI	TCCGGA	1 cut(s)	842
BseBI	CCWGG	1 cut(s)	1214
BseCI	ATCGAT	1 cut(s)	1077
BseGI	GGATG	5 cut(s)	118, 358, 990, 1141, 1309
BseLI	CCNNNNNNNGG	6 cut(s)	216, 370, 371, 564, 596, 662
BseMII	CTCAG	5 cut(s)	12, 458, 854, 1140, 1368
BseNI	ACTGG	1 cut(s)	1182
BseRI	GAGGAG	6 cut(s)	38, 50, 291, 432, 1082, 1172
BseSI	GKGCMC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	640
BshFI	GGCC	2 cut(s)	156, 228
BshVI	ATCGAT	1 cut(s)	1077
BsiSI	CCGG	1 cut(s)	843
BslFI	GGGAC	2 cut(s)	442, 587
BslI	CCNNNNNNNGG	6 cut(s)	216, 370, 371, 564, 596, 662
BsmAI	GTCTC	5 cut(s)	383, 473, 618, 660, 760
BsmBI	CGTCTC	2 cut(s)	383, 473
BsmFI	GGGAC	2 cut(s)	442, 587
BsmI	GAATGC	2 cut(s)	533, 838
BsnI	GGCC	2 cut(s)	156, 228
Bsp1286I	GDGCHC	2 cut(s)	136, 345
Bsp13I	TCCGGA	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	87, 161, 201, 730
Bsp1720I	GCTNAGC	1 cut(s)	416
BspACI	CCGC	5 cut(s)	51, 359, 640, 796, 799
BspANI	GGCC	2 cut(s)	156, 228
BspCNI	CTCAG	5 cut(s)	13, 457, 855, 1139, 1369
BspDI	ATCGAT	1 cut(s)	1077
BspEI	TCCGGA	1 cut(s)	842
BspFNI	CGCG	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	174, 363, 589
BspPI	GGATC	2 cut(s)	156, 196
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	1182
BssMI	GATC	4 cut(s)	87, 161, 201, 730
BssSI	CACGAG	2 cut(s)	452, 1298
Bst2BI	CACGAG	2 cut(s)	452, 1298
Bst2UI	CCWGG	1 cut(s)	1214
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	7 cut(s)	27, 57, 191, 236, 391, 557, 1149
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	870, 1383
BstDEI	CTNAG	6 cut(s)	21, 416, 444, 863, 1126, 1377
BstF5I	GGATG	5 cut(s)	118, 358, 990, 1141, 1309
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	2 cut(s)	628, 640
BstKTI	GATC	4 cut(s)	90, 164, 204, 733
BstMAI	GTCTC	5 cut(s)	383, 473, 618, 660, 760
BstMBI	GATC	4 cut(s)	87, 161, 201, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	1349
BstNI	CCWGG	1 cut(s)	1214
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	1212
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	1314
BsuRI	GGCC	2 cut(s)	156, 228
BsuTUI	ATCGAT	1 cut(s)	1077
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	5 cut(s)	118, 358, 990, 1141, 1309
BtsI	GCAGTG	1 cut(s)	1338
BtsIMutI	CAGTG	3 cut(s)	157, 345, 1338
Cac8I	GCNNGC	2 cut(s)	870, 1383
CaiI	CAGNNNCTG	1 cut(s)	1259
CfoI	GCGC	2 cut(s)	628, 640
Cfr13I	GGNCC	3 cut(s)	361, 587, 1373
ClaI	ATCGAT	1 cut(s)	1077
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	322, 1123
CviAII	CATG	3 cut(s)	461, 559, 869
CviQI	GTAC	2 cut(s)	322, 1123
DdeI	CTNAG	6 cut(s)	21, 416, 444, 863, 1126, 1377
DpnI	GATC	4 cut(s)	89, 163, 203, 732
DpnII	GATC	4 cut(s)	87, 161, 201, 730
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	7 cut(s)	27, 57, 191, 236, 391, 557, 1149
EarI	CTCTTC	7 cut(s)	27, 57, 191, 236, 391, 557, 1149
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	361, 587, 1373
Eco57I	CTGAAG	3 cut(s)	133, 1005, 1284
EcoO109I	RGGNCCY	2 cut(s)	587, 1373
EcoRI	GAATTC	2 cut(s)	16, 538
EcoRII	CCWGG	1 cut(s)	1212
EcoT38I	GRGCYC	1 cut(s)	136
Esp3I	CGTCTC	2 cut(s)	383, 473
FaeI	CATG	3 cut(s)	464, 562, 872
FaiI	YATR	7 cut(s)	295, 462, 560, 870, 1013, 1034, 1106
FaqI	GGGAC	2 cut(s)	442, 587
FatI	CATG	3 cut(s)	460, 558, 868
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	799
FokI	GGATG	5 cut(s)	125, 365, 977, 1148, 1316
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	799
FspBI	CTAG	2 cut(s)	714, 1172
FspI	TGCGCA	1 cut(s)	627
GlaI	GCGC	2 cut(s)	627, 639
GluI	GCNGC	1 cut(s)	799
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	156, 228
HapII	CCGG	1 cut(s)	843
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	628, 640
Hin1II	CATG	3 cut(s)	464, 562, 872
Hin6I	GCGC	2 cut(s)	626, 638
HinP1I	GCGC	2 cut(s)	626, 638
HinfI	GANTC	6 cut(s)	138, 282, 399, 1109, 1256, 1277
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	6 cut(s)	41, 199, 242, 344, 394, 547
Hpy166II	GTNNAC	1 cut(s)	1333
Hpy188I	TCNGA	6 cut(s)	22, 166, 395, 864, 985, 1255
Hpy8I	GTNNAC	1 cut(s)	1333
Hpy99I	CGWCG	2 cut(s)	305, 308
HpyAV	CCTTC	7 cut(s)	88, 157, 323, 509, 590, 628, 970
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	306, 809
HpyCH4V	TGCA	9 cut(s)	129, 549, 605, 745, 838, 872, 914, 1235, 1385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1349
HpyF3I	CTNAG	6 cut(s)	21, 416, 444, 863, 1126, 1377
HpySE526I	ACGT	2 cut(s)	306, 809
Hsp92II	CATG	3 cut(s)	464, 562, 872
HspAI	GCGC	2 cut(s)	626, 638
Kpn2I	TCCGGA	1 cut(s)	842
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	87, 161, 201, 730
LmnI	GCTCC	3 cut(s)	37, 413, 1001
LweI	GCATC	2 cut(s)	710, 1083
MaeI	CTAG	2 cut(s)	714, 1172
MaeII	ACGT	2 cut(s)	306, 809
MaeIII	GTNAC	4 cut(s)	332, 400, 553, 1129
MalI	GATC	4 cut(s)	89, 163, 203, 732
MboI	GATC	4 cut(s)	87, 161, 201, 730
MhlI	GDGCHC	2 cut(s)	136, 345
MlsI	TGGCCA	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	276, 408
MmeI	TCCRAC	1 cut(s)	504
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	842
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	3 cut(s)	812, 1085, 1227
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	801
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	1 cut(s)	1214
Mva1269I	GAATGC	2 cut(s)	533, 838
MvaI	CCWGG	1 cut(s)	1214
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	1 cut(s)	1349
NdeII	GATC	4 cut(s)	87, 161, 201, 730
NlaIII	CATG	3 cut(s)	464, 562, 872
NlaIV	GGNNCC	3 cut(s)	174, 363, 589
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	3 cut(s)	332, 400, 553
NsbI	TGCGCA	1 cut(s)	627
NspI	RCATGY	1 cut(s)	872
PaeI	GCATGC	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	2 cut(s)	533, 838
PfeI	GAWTC	4 cut(s)	138, 1109, 1256, 1277
PfoI	TCCNGGA	1 cut(s)	1212
PkrI	GCNGC	1 cut(s)	800
PleI	GAGTC	2 cut(s)	276, 407
PpsI	GAGTC	2 cut(s)	276, 407
PpuMI	RGGWCCY	2 cut(s)	587, 1373
PshBI	ATTAAT	1 cut(s)	1227
Psp1406I	AACGTT	1 cut(s)	809
Psp5II	RGGWCCY	2 cut(s)	587, 1373
Psp6I	CCWGG	1 cut(s)	1212
PspGI	CCWGG	1 cut(s)	1212
PspN4I	GGNNCC	3 cut(s)	174, 363, 589
PspPI	GGNCC	3 cut(s)	361, 587, 1373
PspPPI	RGGWCCY	2 cut(s)	587, 1373
PstNI	CAGNNNCTG	1 cut(s)	1259
RsaI	GTAC	2 cut(s)	323, 1124
RsaNI	GTAC	2 cut(s)	322, 1123
SaqAI	TTAA	3 cut(s)	812, 1085, 1227
SatI	GCNGC	1 cut(s)	799
Sau3AI	GATC	4 cut(s)	87, 161, 201, 730
Sau96I	GGNCC	3 cut(s)	361, 587, 1373
SchI	GAGTC	2 cut(s)	276, 408
ScrFI	CCNGG	1 cut(s)	1214
SduI	GDGCHC	2 cut(s)	136, 345
SfaNI	GCATC	2 cut(s)	710, 1083
SinI	GGWCC	3 cut(s)	361, 587, 1373
SmlI	CTYRAG	2 cut(s)	488, 1292
SmoI	CTYRAG	2 cut(s)	488, 1292
SphI	GCATGC	1 cut(s)	872
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	5 cut(s)	51, 359, 640, 796, 799
SspMI	CTAG	2 cut(s)	714, 1172
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	1212
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	309, 812
TaqI	TCGA	7 cut(s)	274, 300, 675, 1044, 1077, 1152, 1346
TatI	WGTACW	2 cut(s)	321, 1122
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	138, 1109, 1256, 1277
Tru1I	TTAA	3 cut(s)	812, 1085, 1227
Tru9I	TTAA	3 cut(s)	812, 1085, 1227
TscAI	CASTG	3 cut(s)	157, 352, 1345
TseFI	GTSAC	3 cut(s)	332, 400, 553
Tsp45I	GTSAC	3 cut(s)	332, 400, 553
TspDTI	ATGAA	5 cut(s)	223, 342, 417, 575, 1155
TspGWI	ACGGA	2 cut(s)	400, 1148
TspRI	CASTG	3 cut(s)	157, 352, 1345
VpaK11BI	GGWCC	3 cut(s)	361, 587, 1373
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	2 cut(s)	16, 538
XceI	RCATGY	1 cut(s)	872
XspI	CTAG	2 cut(s)	714, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.