FvH4_1g26150

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18003590 .. 18007129
3540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26150.t2

Sequence Viewer

Length: 1347 bp
ATGAGAAACCTGAAAGTGGAAGAGAGCGAGAAAGTGAAAGAGGTGATCAGGAAGGAGGTTAAAGATTGGGACGACGAGTTGGTCTGCAGAGCCCGATTCAAAGCCTTCAGCGGCCAACGGTCCGATTGCGAACCCATCTACCTCTTCTGGAGAAACCTGATCCTCACCGTCGCTCGCCAACTAGGCCTCTTCATCATCAAACCCTCTCACCTCAAGACCCACTGGTTCAATCGAGGAGGCCTCTCTCCCTTATGCCTCGACGACGTCTTGTTTGTGATGTACAATGAAGGTGAAGCTGTGCCTGCTGCGGATGTTGCCGACCCCACCGCCGGGCGGATATCCCGGATTTTCAGGAGAGTGACCAGCTCCGTGGCTAGCTTTGCTTCTTCAGCACCGACTCCGCAGGTTCTGATGGCACATGATCGTCTCATTCTTACTCCGATTCTCAAGGATAAAGCTGTTGAAATTGTGGAGGTTTTGTCTGAGTGCCATTGGAATGGTTGGTGCATTGTCACCATGGAGAGGTTCCGGGAATTGTGTGGAGGGACGTTTGAAGGTTCGGTAGTCTTGTCTCACTTGTCAGCGCAGGGGAAGGCGCGGTATCTCTCGCTTCCCAACAGGGGGGACTTATTACAGGGTGTGAAAGTCTCCATTTCAGCGTCTTCTGTTCCTAGTGTTTCAAGTTTAGACCGTGATGTTCTGCACTTGACTTGGACAAGAGAGAGACTTCAACAACAACTTGATGTAATTGACCGAAGATGTGAAACGTTAAGAAAATCAGCATTAGCTTGTTTGCATTCTGGAAACAAGAAAGTGGCTCTGAGGCATGCAAGAGAGTTAAAGTTGGCGAATGAGAGTAGAGAAAAATGTTCAACCTTCATGAACAGAGTGGTGGAAGTTCTTGATTTTATCGCAAATGCTGAAATGACAAAGAAGGTTTCTGAAGCTATCCAAATTGGAGCTAAAGCTATAAAGGAAAATAAGATTAGTGTGGAAGAAGTTGAAGATAGCCTACAGGAAATTGAGGAGAGCATTGATACACTAAAGCAATTAGAAAATATTATAGAATCAACCCCCCTGTACTCAGTTACAGATGATGAAGAAAATATCGAAGAGGAGTTCAGGAAACTAGAGCTGGATATTGGACATGAAAACCATCATGAACCAATCGTGAAAACTGAGGTTAACAATGCAGTAGAAACAGAGAGTTCTGCTGAAGTGTTGTTAGATTCTTTATCAAATCTCAAGCTTTCAGATGATGGTCAAGCAAGGATACCAGCAATTCAGGGCACTGCCTCGACAGTAAGAAACAACAAAACAAAAACTCCTGACCTCGCTACCGCTTAA

Protein Analysis

449

Amino Acids

50.3

Weight (kDa)

5.62

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_CHMP7_1st PF25880 20 - 100 1.1e-20 CHMP7 N-terminal winged helix domain
Snf7 PF03357 235 - 396 7.3e-15 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 394
AccII CGCG 1 cut(s) 598
AciI CCGC 7 cut(s) 111, 308, 327, 334, 401, 598, 1341
AclI AACGTT 1 cut(s) 767
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 4 cut(s) 91, 372, 963, 1236
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 281, 1082
AfiI CCNNNNNNNGG 7 cut(s) 16, 329, 330, 333, 522, 620, 621
AgsI TTSAA 8 cut(s) 100, 229, 464, 554, 681, 731, 873, 1004
Alw26I GTCTC 4 cut(s) 431, 576, 652, 718
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 3 cut(s) 112, 184, 238
ApeKI GCWGC 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 2 cut(s) 586, 598
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 3 cut(s) 331, 343, 530
AsuHPI GGTGA 5 cut(s) 55, 157, 200, 302, 505
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 1292
BanII GRGCYC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 292
BccI CCATC 4 cut(s) 143, 406, 1164, 1253
BciVI GTATCC 1 cut(s) 1266
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 3 cut(s) 331, 343, 530
BcoDI GTCTC 4 cut(s) 431, 576, 652, 718
BfaI CTAG 4 cut(s) 182, 375, 672, 1130
BfmI CTRYAG 2 cut(s) 85, 1013
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 1266
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 2 cut(s) 112, 306
BlsI GCNGC 2 cut(s) 113, 307
Bme1390I CCNGG 3 cut(s) 331, 343, 530
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 3 cut(s) 331, 343, 530
BmtI GCTAGC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 3 cut(s) 197, 431, 1229
BpuMI CCSGG 3 cut(s) 331, 343, 530
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 369, 516
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 1309, 1339
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 329, 330, 333, 522, 620, 621
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 369, 516
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 7 cut(s) 16, 329, 330, 333, 522, 620, 621
BseMII CTCAG 4 cut(s) 474, 812, 1098, 1170
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 3 cut(s) 249, 1040, 1130
BseSI GKGCMC 1 cut(s) 1292
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 3 cut(s) 114, 186, 240
BsiSI CCGG 3 cut(s) 330, 343, 529
BslFI GGGAC 3 cut(s) 83, 559, 638
BslI CCNNNNNNNGG 7 cut(s) 16, 329, 330, 333, 522, 620, 621
BsmAI GTCTC 4 cut(s) 431, 576, 652, 718
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 3 cut(s) 83, 559, 638
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 3 cut(s) 114, 186, 240
Bsp1286I GDGCHC 2 cut(s) 94, 1292
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 45, 159, 421
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 7 cut(s) 111, 308, 327, 334, 401, 598, 1341
BspANI GGCC 3 cut(s) 114, 186, 240
BspCNI CTCAG 4 cut(s) 475, 813, 1097, 1171
BspFNI CGCG 1 cut(s) 598
BspHI TCATGA 2 cut(s) 879, 1159
BspLI GGNNCC 1 cut(s) 527
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 394
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 369, 516
BssMI GATC 3 cut(s) 45, 159, 421
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 516
Bst4CI ACNGT 4 cut(s) 120, 169, 692, 1303
Bst6I CTCTTC 4 cut(s) 15, 149, 194, 1107
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 279
BstC8I GCNNGC 4 cut(s) 175, 303, 376, 828
BstDEI CTNAG 4 cut(s) 483, 821, 1084, 1179
BstDSI CCRYGG 2 cut(s) 369, 516
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 598
BstHHI GCGC 2 cut(s) 586, 598
BstKTI GATC 3 cut(s) 48, 162, 424
BstMAI GTCTC 4 cut(s) 431, 576, 652, 718
BstMBI GATC 3 cut(s) 45, 159, 421
BstMWI GCNNNNNNNGC 5 cut(s) 183, 302, 314, 380, 389
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 3 cut(s) 329, 341, 528
BstSFI CTRYAG 2 cut(s) 85, 1013
BstSLI GKGCMC 1 cut(s) 1292
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 654
BstXI CCANNNNNNTGG 2 cut(s) 370, 497
BsuI GTATCC 1 cut(s) 1266
BsuRI GGCC 3 cut(s) 114, 186, 240
BtgI CCRYGG 2 cut(s) 369, 516
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 1290
BtsIMutI CAGTG 2 cut(s) 220, 1290
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 4 cut(s) 175, 303, 376, 828
CaiI CAGNNNCTG 1 cut(s) 409
CciI TCATGA 2 cut(s) 879, 1159
CfoI GCGC 2 cut(s) 586, 598
Cfr13I GGNCC 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 120
CseI GACGC 1 cut(s) 648
Csp6I GTAC 2 cut(s) 280, 1081
CspI CGGWCCG 1 cut(s) 120
CviAII CATG 6 cut(s) 419, 517, 827, 880, 1148, 1160
CviQI GTAC 2 cut(s) 280, 1081
DdeI CTNAG 4 cut(s) 483, 821, 1084, 1179
DpnI GATC 3 cut(s) 47, 161, 423
DpnII GATC 3 cut(s) 45, 159, 421
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 4 cut(s) 15, 149, 194, 1107
EarI CTCTTC 4 cut(s) 15, 149, 194, 1107
EciI GGCGGA 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 516
Eco147I AGGCCT 2 cut(s) 186, 240
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 4 cut(s) 91, 372, 963, 1236
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 6 cut(s) 422, 520, 830, 883, 1151, 1163
FaiI YATR 9 cut(s) 253, 420, 518, 828, 881, 971, 1064, 1149, 1161
FaqI GGGAC 3 cut(s) 83, 559, 638
FatI CATG 6 cut(s) 418, 516, 826, 879, 1147, 1159
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 112, 306
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 112, 306
FspBI CTAG 4 cut(s) 182, 375, 672, 1130
GlaI GCGC 2 cut(s) 585, 597
GluI GCNGC 2 cut(s) 112, 306
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 3 cut(s) 114, 186, 240
HapII CCGG 3 cut(s) 330, 343, 529
HgaI GACGC 1 cut(s) 648
HhaI GCGC 2 cut(s) 586, 598
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 6 cut(s) 422, 520, 830, 883, 1151, 1163
Hin6I GCGC 2 cut(s) 584, 596
HinP1I GCGC 2 cut(s) 584, 596
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 1 cut(s) 1247
HinfI GANTC 5 cut(s) 96, 397, 442, 1067, 1229
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 3 cut(s) 330, 343, 529
HphI GGTGA 5 cut(s) 55, 157, 200, 302, 505
Hpy166II GTNNAC 1 cut(s) 1186
Hpy188I TCNGA 7 cut(s) 124, 411, 441, 484, 822, 943, 1255
Hpy8I GTNNAC 1 cut(s) 1186
Hpy99I CGWCG 4 cut(s) 77, 173, 263, 266
HpyAV CCTTC 7 cut(s) 46, 115, 281, 548, 586, 886, 928
HpyCH4III ACNGT 4 cut(s) 120, 169, 692, 1303
HpyCH4IV ACGT 3 cut(s) 264, 548, 767
HpyCH4V TGCA 6 cut(s) 87, 507, 703, 796, 830, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 302, 314, 380, 389
HpyF3I CTNAG 4 cut(s) 483, 821, 1084, 1179
HpySE526I ACGT 3 cut(s) 264, 548, 767
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 6 cut(s) 422, 520, 830, 883, 1151, 1163
HspAI GCGC 2 cut(s) 584, 596
Ksp22I TGATCA 1 cut(s) 45
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 3 cut(s) 45, 159, 421
LmnI GCTCC 2 cut(s) 371, 959
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 4 cut(s) 182, 375, 672, 1130
MaeII ACGT 3 cut(s) 264, 548, 767
MaeIII GTNAC 3 cut(s) 358, 511, 1087
MalI GATC 3 cut(s) 47, 161, 423
MboI GATC 3 cut(s) 45, 159, 421
MhlI GDGCHC 2 cut(s) 94, 1292
MluCI AATT 7 cut(s) 465, 533, 747, 954, 1020, 1049, 1281
MlyI GAGTC 1 cut(s) 391
MseI TTAA 5 cut(s) 60, 770, 839, 1185, 1345
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 3 cut(s) 330, 343, 529
MspR9I CCNGG 3 cut(s) 331, 343, 530
Mva1269I GAATGC 1 cut(s) 796
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 5 cut(s) 183, 302, 314, 380, 389
NciI CCSGG 3 cut(s) 331, 343, 530
NcoI CCATGG 1 cut(s) 516
NdeII GATC 3 cut(s) 45, 159, 421
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 6 cut(s) 422, 520, 830, 883, 1151, 1163
NlaIV GGNNCC 1 cut(s) 527
NmuCI GTSAC 2 cut(s) 358, 511
NspI RCATGY 1 cut(s) 830
PaeI GCATGC 1 cut(s) 830
PagI TCATGA 2 cut(s) 879, 1159
PceI AGGCCT 2 cut(s) 186, 240
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 4 cut(s) 96, 442, 1067, 1229
PflFI GACNNNGTC 1 cut(s) 263
PfoI TCCNGGA 2 cut(s) 341, 528
PkrI GCNGC 2 cut(s) 113, 307
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp1406I AACGTT 1 cut(s) 767
PspN4I GGNNCC 1 cut(s) 527
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 2 cut(s) 281, 1082
RsaNI GTAC 2 cut(s) 280, 1081
RseI CAYNNNNRTG 1 cut(s) 495
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SaqAI TTAA 5 cut(s) 60, 770, 839, 1185, 1345
SatI GCNGC 2 cut(s) 112, 306
Sau3AI GATC 3 cut(s) 45, 159, 421
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 3 cut(s) 331, 343, 530
SduI GDGCHC 2 cut(s) 94, 1292
SfcI CTRYAG 2 cut(s) 85, 1013
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 212, 446, 1244
SmoI CTYRAG 3 cut(s) 212, 446, 1244
SphI GCATGC 1 cut(s) 830
Sse9I AATT 7 cut(s) 465, 533, 747, 954, 1020, 1049, 1281
SseBI AGGCCT 2 cut(s) 186, 240
SsiI CCGC 7 cut(s) 111, 308, 327, 334, 401, 598, 1341
SspI AATATT 1 cut(s) 1060
SspMI CTAG 4 cut(s) 182, 375, 672, 1130
StuI AGGCCT 2 cut(s) 186, 240
StyD4I CCNGG 3 cut(s) 329, 341, 528
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 4 cut(s) 120, 169, 692, 1303
TaiI ACGT 3 cut(s) 267, 551, 770
TaqI TCGA 4 cut(s) 232, 258, 1110, 1298
TaqII GACCGA 1 cut(s) 768
TasI AATT 7 cut(s) 465, 533, 747, 954, 1020, 1049, 1281
TatI WGTACW 2 cut(s) 279, 1080
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 4 cut(s) 96, 442, 1067, 1229
Tru1I TTAA 5 cut(s) 60, 770, 839, 1185, 1345
Tru9I TTAA 5 cut(s) 60, 770, 839, 1185, 1345
TscAI CASTG 2 cut(s) 227, 1297
TseFI GTSAC 2 cut(s) 358, 511
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 2 cut(s) 358, 511
TspDTI ATGAA 7 cut(s) 181, 300, 868, 896, 1113, 1164, 1176
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 2 cut(s) 227, 1297
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 1 cut(s) 830
XspI CTAG 4 cut(s) 182, 375, 672, 1130
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.