Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007914

Physical Location & Seq

Genomic Coordinates Reverse (-)

10819128 .. 10822738

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTAACCGTATGCGCTACCTTCCCGGAAGTAGTCATCGGGTTACCAAGGATGTCCCTCTCTATGCACGGGGAACGAGAGGAAGAGTTTCGATCTCCTGCCGATCTCCTCCTCGTTGTTCCATGGAAGGTTGTCCTCTTGTTGTGCGGAAGGAGGCGTCCGATGTTATTGATGAAAGGTGAAATTGTCCCCACTGTGGATGTTGCGGACCCCACTTCTAGGCTTCTCTCCCGGATTTTCGGAAGAGTCACCGGCTCCGTGCTTGGCCTTGCTTCATCAACCCCGACTCCTCGGCTTTTCGTGTCTCATGAGCGTCTTGTTCTTACCCCACTTCTCAAGGATAAAGCTGTTCAAATTGTGGAAGGTCTGTCGGAATGCCATTGGGATTCTTGGTGCATTGTCACCATGAAGAGGTTCGGGACTTGTGTGGAGGCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000815 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0006810 GO:0006996 GO:0006997 GO:0006998 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010008 GO:0010256 GO:0010458 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0031090 GO:0031410 GO:0031468 GO:0031967 GO:0031975 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0045184 GO:0045324 GO:0046907 GO:0048285 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

146

Amino Acids

16.24

Weight (kDa)

8.36

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62080 AT3G62080
fragaria_vesca	FvH4_1g26150 FvH4_1g26150
malus_domestica	MD09G1291400.v1.1
prunus_persica	Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1 Prupe.3G001500_v2.0.a1
pyrus_communis	pycom09g19930
rosa_chinensis	RchiOBHm_Chr3g0485641
rosa_laevigata	RLG00000023138
rosa_multiflora	Rmu_co8480455.1_g000001 Rmu_sc0001272.1_g000001 Rmu_sc0004711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290290 Rroxscaffold_4G00311870 Rroxscaffold_6G00396560 Rroxscaffold_6G00396870
rosa_rugosa	Rorug03G0220400
rosa_samantha	Rh3AG269300 Rh3BG305100 Rh3CG303400 Rh3DG299600
rosa_wichuraiana	Rw3G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 206
AcyI	GRCGYC	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	196, 219, 411
AgsI	TTSAA	1 cut(s)	353
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	309
AoxI	GGCC	2 cut(s)	265, 432
Asp700I	GAANNNNTTC	2 cut(s)	87, 413
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	208, 433
AsuC2I	CCSGG	2 cut(s)	26, 232
AsuHPI	GGTGA	3 cut(s)	191, 241, 394
AvaII	GGWCC	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	26, 232
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	26, 232
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 433
BmiI	GGNNCC	2 cut(s)	210, 256
BmrFI	CCNGG	2 cut(s)	26, 232
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	26, 232
BsaHI	GRCGYC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	47, 122, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 219, 411
Bse118I	RCCGGY	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	47, 122, 290
BseGI	GGATG	2 cut(s)	57, 205
BseLI	CCNNNNNNNGG	3 cut(s)	196, 219, 411
BseRI	GAGGAG	3 cut(s)	98, 101, 279
BshFI	GGCC	2 cut(s)	267, 434
BsiSI	CCGG	3 cut(s)	26, 232, 252
BslFI	GGGAC	3 cut(s)	40, 173, 433
BslI	CCNNNNNNNGG	3 cut(s)	196, 219, 411
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	3 cut(s)	40, 173, 433
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	267, 434
Bsp143I	GATC	2 cut(s)	92, 103
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	2 cut(s)	147, 206
BspANI	GGCC	2 cut(s)	267, 434
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	210, 256
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	47, 122, 290
BssMI	GATC	2 cut(s)	92, 103
BssNI	GRCGYC	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	47, 122
Bst4CI	ACNGT	2 cut(s)	10, 196
Bst6I	CTCTTC	3 cut(s)	78, 238, 404
BstACI	GRCGYC	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	122
BstEII	GGTNACC	2 cut(s)	4, 42
BstF5I	GGATG	2 cut(s)	57, 205
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	95, 106
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	92, 103
BstPI	GGTNACC	2 cut(s)	4, 42
BstSCI	CCNGG	2 cut(s)	24, 230
BsuRI	GGCC	2 cut(s)	267, 434
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	57, 205
BtsIMutI	CAGTG	1 cut(s)	192
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	208, 433
CseI	GACGC	2 cut(s)	146, 302
CviAII	CATG	3 cut(s)	123, 308, 406
CviJI	RGCY	6 cut(s)	223, 255, 267, 295, 347, 434
CviKI_1	RGCY	6 cut(s)	223, 255, 267, 295, 347, 434
DpnI	GATC	2 cut(s)	94, 105
DpnII	GATC	2 cut(s)	92, 103
Eam1104I	CTCTTC	3 cut(s)	78, 238, 404
EarI	CTCTTC	3 cut(s)	78, 238, 404
Eco130I	CCWWGG	2 cut(s)	47, 122
Eco47I	GGWCC	1 cut(s)	208
Eco91I	GGTNACC	2 cut(s)	4, 42
EcoO109I	RGGNCCY	1 cut(s)	433
EcoO65I	GGTNACC	2 cut(s)	4, 42
EcoT14I	CCWWGG	2 cut(s)	47, 122
ErhI	CCWWGG	2 cut(s)	47, 122
FaeI	CATG	3 cut(s)	126, 311, 409
FaiI	YATR	5 cut(s)	13, 65, 124, 309, 407
FaqI	GGGAC	3 cut(s)	40, 173, 433
FatI	CATG	3 cut(s)	122, 307, 405
FokI	GGATG	2 cut(s)	64, 212
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	267, 434
HapII	CCGG	3 cut(s)	26, 232, 252
HgaI	GACGC	2 cut(s)	146, 302
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	126, 311, 409
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	246, 286, 386
HpaII	CCGG	3 cut(s)	26, 232, 252
HphI	GGTGA	3 cut(s)	191, 241, 394
Hpy188I	TCNGA	3 cut(s)	162, 242, 373
Hpy188III	TCNNGA	2 cut(s)	308, 418
HpyAV	CCTTC	4 cut(s)	31, 121, 144, 356
HpyCH4III	ACNGT	2 cut(s)	10, 196
HpyCH4V	TGCA	2 cut(s)	67, 396
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	126, 311, 409
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	92, 103
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	4 cut(s)	39, 111, 245, 265
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	4, 42, 247, 400
MalI	GATC	2 cut(s)	94, 105
MboI	GATC	2 cut(s)	92, 103
MboII	GAAGA	3 cut(s)	95, 255, 421
MluCI	AATT	2 cut(s)	183, 354
MlyI	GAGTC	2 cut(s)	255, 280
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	9 cut(s)	68, 73, 119, 122, 146, 147, 300, 405, 424
MroXI	GAANNNNTTC	2 cut(s)	87, 413
MspI	CCGG	3 cut(s)	26, 232, 252
MspR9I	CCNGG	2 cut(s)	26, 232
Mva1269I	GAATGC	1 cut(s)	380
NciI	CCSGG	2 cut(s)	26, 232
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	92, 103
NlaIII	CATG	3 cut(s)	126, 311, 409
NlaIV	GGNNCC	2 cut(s)	210, 256
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	247, 400
PagI	TCATGA	1 cut(s)	307
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	87, 413
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	2 cut(s)	24, 230
PleI	GAGTC	2 cut(s)	254, 280
PpsI	GAGTC	2 cut(s)	254, 280
PspEI	GGTNACC	2 cut(s)	4, 42
PspN4I	GGNNCC	2 cut(s)	210, 256
PspPI	GGNCC	2 cut(s)	208, 433
Sau3AI	GATC	2 cut(s)	92, 103
Sau96I	GGNCC	2 cut(s)	208, 433
SchI	GAGTC	2 cut(s)	255, 280
ScrFI	CCNGG	2 cut(s)	26, 232
SetI	ASST	6 cut(s)	23, 132, 181, 349, 367, 416
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	183, 354
SsiI	CCGC	2 cut(s)	147, 206
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	24, 230
StyI	CCWWGG	2 cut(s)	47, 122
TaaI	ACNGT	2 cut(s)	10, 196
TaqI	TCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	183, 354
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	247, 400
Tsp45I	GTSAC	2 cut(s)	247, 400
TspDTI	ATGAA	3 cut(s)	188, 264, 422
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	208
XmnI	GAANNNNTTC	2 cut(s)	87, 413
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.